KEGG   Janthinobacterium sp. Marseille: mma_0622
Entry
mma_0622          CDS       T00561                                 
Symbol
rho
Name
(GenBank) Rho transcription termination factor
  KO
K03628  transcription termination factor Rho
Organism
mms  Janthinobacterium sp. Marseille
Pathway
mms03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mms00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    mma_0622 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mms03021]
    mma_0622 (rho)
   03019 Messenger RNA biogenesis [BR:mms03019]
    mma_0622 (rho)
Transcription machinery [BR:mms03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     mma_0622 (rho)
Messenger RNA biogenesis [BR:mms03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     mma_0622 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 OB_RNB NACHT S1CSD-TOTE-2 FtsK_SpoIIIE
Other DBs
NCBI-ProteinID: ABR88881
LinkDB
Position
complement(706989..708254)
AA seq 421 aa
MHLSELKALHVSALLEMAISLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD
GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GESPEASKHRILFENLTPLHPNKPLLLERDMRGEENITGRIIDLIAPIGKGQRGLLVASP
KSGKSVMLQHIAHAITTNHPEAVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV
QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL
NKSGTRREELLIKPDQLQKIWVLRKLLYGMDEIEAMEFILDKMKATKNNAEFFDMMRRGN
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcatttatctgaactaaaggcgttacacgtctccgccctgctagaaatggcaatcagc
ctggacatcgacaacgctgcgcgcttgcgcaaacaagaactgatgttcgcgattctcaag
aaacgcgcgaaatcaggagaacaaatttttggcgatggcgccctcgaagtattgcctgac
ggctttggcttcctgcgctcgcccgacgccagctacatggcgtccaccgacgacatctat
atctcgccttcgcaaatccgccgcttcaatctgcacaccggcgattcgatcgaaggtgaa
gtccgcacgccgaaagacggcgaacgctactttgcactggtcaaggtagacaaggtcaac
ggcgaatcgccggaagcctcgaaacaccgcatcctgtttgaaaatctgacgccgctgcac
cctaacaagccattgctgcttgagcgcgatatgcgcggcgaagaaaacatcaccggccgc
atcattgatttgatcgcacctatcggtaaaggccagcgcggcttgctggtggcatcgcct
aaatccggtaagtccgtgatgctgcaacacattgcacacgccatcacgaccaatcacccg
gaagcagtcatgatcgtgctactgatcgacgaacgtccggaagaagtgaccgagatgcag
cgttcggtacgcggcgaagtcgtggcatcgacctttgatgaacctgcgacccgtcacgtg
caggttgcagaaatggtgctggaaaaagccaagcgcctggttgaaatgaaaaaagacgtc
gtgatcctgctcgattcgatcacccgcctggcacgtgcatacaacaccgtgatccctgcc
tccggcaaggtattgaccggtggtgtcgatgcgaacgcactgcaacgtccaaaacgcttc
ttcggtgccgcgcgcaatatcgaagaaggcggttcgctgaccatcatcgcgaccgcgctg
atcgaaaccggcagccgcatggatgacgtgatctacgaagaattcaagggtaccggcaat
atggaagtccatctcgaacgccgcctggccgagaagcgcgtctaccctgcgatcaacttg
aacaaatccggcacccgccgcgaagaattgctgatcaaaccggatcagctgcaaaagatc
tgggtcttgcgcaaactcttgtacggtatggacgaaatcgaagcgatggaattcatcctc
gacaagatgaaggcaaccaagaacaacgccgaattctttgacatgatgcgtcgcggtaat
tcctga

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