Janthinobacterium sp. Marseille: mma_1180
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Entry
mma_1180 CDS
T00561
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mms
Janthinobacterium sp. Marseille
Brite
KEGG Orthology (KO) [BR:
mms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mms03019
]
mma_1180 (hrpA)
Enzymes [BR:
mms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
mma_1180 (hrpA)
Messenger RNA biogenesis [BR:
mms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
mma_1180 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
T2SSE
nSTAND3
nSTAND_NTPase5
NACHT
DUF1484
TsaE
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
ABR88983
LinkDB
All DBs
Position
1338648..1342607
Genome browser
AA seq
1319 aa
AA seq
DB search
MSAPESNQRPGNASRRPARNAQAPSAPPVRNPLPAISFPEELPVSGKRDDIARAIQANQV
IIVSGETGSGKTTQLPKICLELGRGLNGLIGHTQPRRIAASSTAKRIAQEIGSPLGEHVG
FKVRFNDTLTKGAWIKLMTDGILLAETQTDPLLRQYDTIIIDEAHERSLNIDFLLGYLKQ
LLPKRPDLKVIITSATIDADRFARHFGSNGKLAPVIEVSGRLYPVEVRYRPVEAFDKNAD
SNPNATSDAAAARRSALAAKERGQRDLMDAVVDAVDELARIGSGDVLVFLPGEREIRDAA
EALRKHHPPHVEILPLFARLSVQEQERVFKISNARRIVLATNVAETSLTVPGIRYVVDAG
LARVKRYSYRNKVEQLQIEPIAQSAANQRAGRCGRVAAGVCIRLYDEQDYLLRPKFTEPE
ILRSSLASVILRMKSLHLTDVETFPFIEPPLGRAIADGYQLLQELGAVDDENRLTKLGRE
LAKLPLDPRVGRMILAAKDNVCLTEVLIIAAALSVQDPRDRPMEAQGAADNAHKKFADEK
SEFTSYLKIWKWFEDAIAHKKSNRLLQEECRANFLSQLRLREWRDVHSQLLTIVREQGWR
LNEAPATYEQLHTALLTGLLGNIGFKAEDEPHYLGARGIKFHIWPGSSLIKKAGKWVMAA
ELVDTTRLYARCIAQIQPEWLERVAGHLLKKSYGEPRWEKRTAQVSAYERATLYGLVVYS
QRRIQYGLINPADAREIFIRDALVGGDFETRAPFFAHNHKLVREIENLEHKSRRLDVLVD
DELIAAFYDKLIPADIHNGISFEKWHKDATAKEPKLLYLNRDDLMRHEAAGVTTELFPKV
MNVAGVDMALSYHFEPGTPRDGVTLAVPLYALNQVSADRCEWLVPGMLKEKVHLLLKSLP
QKLRRHCVPLPDYAAGFCDRVQDAHAFGKGSLLDAVIADVREQTGIATKTTDYKLETLSA
HQFMNFKVIDEHGRQLEMGRNLASLRNEFGGQARESFQRIAEKTAAPMAQAAQVQVAGKA
ATPATGNKATSSTSAATGIHQNLTSWTFGELPELLEIQQGKQTLIGFPALVDKGAYCDLE
VFDDPNEAARVHRIGLRRLLALQLKEQLKYLEKNIPGLQQMGMQFMALGSQEELREQIIH
AGLERACLQEPLPKTAEQFNARKDEGKSRLGLLVNEIARLVGLVLTEYHALPKKLQTVKA
HTQAVNDMQAQLQGLVGKRFIADNDYTNLTHFPRYLKAINVRIDKLRADPARDTRAMAEW
QQAAAPWQRALKERHGDPKMTEFRWLLEELRVSLYAQELRTPMPVSVKRLQKVWESMQR
NT seq
3960 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctccagaatccaatcaaaggccgggtaatgcatcccggcgtccggcgcgtaac
gcgcaggccccatccgctccgccggtacgcaatcctttaccggcgatcagctttccagaa
gagctgccggtttccggcaagcgcgacgatatcgcgcgcgcgatccaggcgaaccaggtg
attatcgtcagtggtgaaaccggctccggtaaaaccacgcaattgccgaagatttgcctc
gaactcgggcgcggcctgaacggcctgatcggtcatacgcaaccgcgccgtatcgccgca
tcatcgaccgccaaacgcattgcgcaagagatcggttcgccgctgggtgagcacgtcggc
ttcaaggtacgcttcaacgacaccctgaccaagggggcgtggatcaagctgatgaccgac
ggtatcctgctggccgagacgcaaaccgatccgctgctgcgccagtacgacaccatcatc
atcgatgaggcgcatgaacgcagcctgaacatcgacttcctgctcggctacctgaagcag
ttgctgcccaagcgtccggacctgaaagtcatcattacgtcggccaccatcgatgctgat
cgctttgcgcgtcacttcggcagcaacggcaagctggcaccggtgatcgaagtatccggc
cgcctgtatccggtcgaagtccggtatcgcccggttgaagccttcgacaagaatgccgac
agcaatccgaacgccacctcggatgcggccgctgcacgtcgttccgcactggctgccaag
gaacgcggacagcgcgacctgatggatgcggtggtcgatgcagtcgatgaattggcgcgc
ataggttccggtgatgtactggtgttcttgccgggtgagcgcgaaattcgcgacgcagcg
gaagccttgcgcaagcatcatccgccgcatgtggaaatcctgccgctgtttgcgcgcctc
tcggtgcaggaacaggagcgggtattcaagatttcgaatgcgcgccgtatcgttttggcg
accaacgttgcagagacatcgctgacggtaccgggcatccgctatgtggtcgatgccggc
ctggcgcgcgtgaagcgctacagctaccgcaataaagtcgaacagctgcagatagaaccg
attgcgcaatcggcggcgaaccagcgcgccggtcgttgcggccgtgtcgcggccggtgtc
tgtatccgcttgtacgacgagcaggattatttgttgcggccgaaatttaccgagccggaa
atcctgcgttcttcgctggcgtctgtcatcttgcgcatgaagtccttgcacttgaccgat
gtcgaaacattccccttcatcgaaccgccgctgggtcgcgcgattgccgacggctatcag
ttgttgcaggagctgggtgcggttgatgatgagaacaggctgaccaaacttggccgtgaa
ctcgccaagctgccgctggatccgcgcgtagggcgcatgatcctggcggcgaaggacaat
gtctgcctgaccgaagtcctcatcatcgccgcagccttgtcggtgcaggatccacgggat
cgaccgatggaagcgcagggggcagccgacaatgcgcacaagaaattcgccgatgaaaaa
tcggaattcaccagctatctgaaaatctggaaatggtttgaagatgcgatcgcgcacaag
aagtcgaatcgcctgctgcaggaagaatgccgcgccaattttctgtcgcaactacgttta
cgcgaatggcgcgatgtacattcgcaattgctgaccattgtgcgtgagcagggctggcgc
ctgaacgaggcaccggcgacttacgaacaattgcatacggccttgctgaccggcttgctc
ggcaatatcggctttaaggctgaggatgagccgcattaccttggtgcccgtggcatcaaa
ttccacatctggccgggttccagcctgatcaagaaagccggcaaatgggtgatggcggcg
gagctggttgatacgacgcgcctgtatgcacgttgcatcgcacagatacagccggaatgg
ctggaacgtgtggccggccatttgctgaagaaatcctatggcgaaccgcgctgggaaaaa
cgcaccgcacaggtgtccgcttatgagcgcgcaaccctgtacgggctggtggtgtatagc
cagcgtcgcatccagtatggcttgatcaatccggccgatgcgcgtgagatatttatacgt
gatgcattggtcggtggcgacttcgaaacgcgcgcacctttctttgcgcataaccacaag
ctggtgcgcgaaatcgaaaacctcgaacacaaatcgcgtcgcctcgatgtattggtcgat
gatgaattgatcgctgctttctacgacaagctgataccggccgatatccacaacggcatc
agcttcgagaaatggcataaggatgcgacggcgaaagaaccgaagctgctttacctgaac
cgcgatgatttgatgcggcatgaagcggcgggtgtgacgaccgagttattccccaaggtg
atgaatgtggccggcgtcgatatggctttgtcctatcactttgaacccggtaccccgcgc
gacggcgtgactttggccgtgcccttgtatgccttgaaccaggtttcagcggacaggtgc
gaatggctggtgcccggcatgttgaaggaaaaggtgcatttgctgctgaagtccttgccg
caaaaattgcgccgccattgcgtacccttgccggattatgcagcaggcttctgtgatcgc
gtgcaggatgcgcacgcctttggcaaaggcagtttgctggatgcggtcatcgctgatgtg
cgcgagcaaaccggtatcgccaccaagactaccgactacaagctggaaaccctgtctgcg
catcaattcatgaatttcaaagtgatcgatgagcatggtcgccaactggaaatggggcgc
aacctcgcttccttgcgcaacgagtttggcgggcaggcgcgcgaaagcttccagcgcatc
gcggaaaagacggctgcaccgatggcgcaggcagcgcaagtgcaagtagctggtaaagcg
gctacaccggcaacgggcaacaaggccacatcatcaacgtcggcggcaaccggcatacat
caaaacctgacgagctggacctttggcgaattgccggagctgctggaaatccagcagggc
aagcagacgctgatcggcttcccggcactggtcgacaaaggcgcgtattgcgacctggaa
gtgtttgatgatccgaatgaagcggcgcgtgtgcaccggataggtttgcgtcgcctgctg
gccttgcagttgaaagagcagctgaagtacctggaaaaaaacatccccggtttgcagcaa
atgggcatgcagttcatggcgctgggttcgcaggaagaattgcgtgaacagatcatccac
gccggactggaacgcgcctgcctgcaagagcctttgccgaaaacggcggagcagttcaat
gcgcgcaaggatgaaggaaaatcaaggctgggcttgctggtaaatgagattgcccgcctg
gtgggcctggtgctgaccgagtaccatgccttgccgaagaagctgcaaacggtgaaagca
catacgcaggcggtgaacgatatgcaggcgcaattgcagggcctggtgggcaagcgtttt
atcgcggacaacgattacaccaatctcacgcatttcccgcgctacctgaaagcgatcaat
gtgcgtatcgataaattgcgggccgatccggcgcgcgatacgcgggcgatggccgaatgg
cagcaagcggctgcgccgtggcaacgggctctgaaggaacgccatggcgatccgaagatg
accgagttccgctggttgctggaagagttaagggtgtccctgtatgcacaggaattgcgc
acgccgatgccggtatcggtcaagcgtttgcaaaaagtgtgggaatcgatgcaacgctag
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