Janthinobacterium sp. Marseille: mma_1248
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Entry
mma_1248 CDS
T00561
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
mms
Janthinobacterium sp. Marseille
Pathway
mms03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mms00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
mma_1248 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mms03400
]
mma_1248 (uvrB)
DNA repair and recombination proteins [BR:
mms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
mma_1248 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
mma_1248 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
Kinesin
Motif
Other DBs
NCBI-ProteinID:
ABR88262
LinkDB
All DBs
Position
1416941..1419031
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AA seq
696 aa
AA seq
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MADLSQVSNSVDEAKVVTFPNSPFRLHQPFPPAGDQPTAIAKLVEGIEDGLFYQTLLGVT
GSGKTYTVANVIARMGRPAIVFAPNKTLAAQLYSEFREFFPENAVEYFVSYYDYYQPEAY
VPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVIIATVSAIYGIGNPSEYHQMILTL
RAKDKVSQRDVIARLIAMQYTRNEIDFGRGTFRVRGDTIDIFPAEHAELAIRLEMFDDEI
ESLQLFDPLTGRVKQKIPRFTVYPGSHYVTPRATVLRAIETIKDELRERLEFFRKESKLV
EEQRLEQRTRFDLEMMQEIGFTKGIENYSRHLSGAKAGDPPPTLVDYLPQDALMFMDESH
VLMGQLNGMYNGDRARKTNLVDYGFRLPSALDNRPLRFDEFEGKMRQMVFVSATPADYEN
THADQVVEQVVRPTGLVDPLISVRPASTQVDDLMSEITDRVKKNERVLVTTLTKRMAEQL
TEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDLPEVSLVAILD
ADKEGFLRSERSLIQTIGRAARNLTGMAILYGDKVTDSMRRAIDETERRRAKQIAFNTAN
NITPIGIKKHIRELIDGVYSPQEARLELQVAQEHAKYEAMSEKQVSKEIKRLEKLMLGHA
KNLEFEKAAQVRDQLRILKEQLFGAPGADNVTPLAG
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggctgatttatcccaggtttccaattccgttgacgaagcgaaagtcgttaccttcccg
aactccccgtttcgcctgcaccagccgttcccgccggcgggggatcagccgactgcaatc
gccaaactggtcgagggtatcgaggacggcttgttttaccagacgctcctgggcgtaacc
ggctccggcaaaacttatacagttgctaacgtaatcgcccgcatggggcgtccggccatc
gtgtttgcgccaaacaagacgctggcggcgcagttatatagtgaattccgcgagtttttc
ccggaaaacgcggtcgagtatttcgtcagttactacgattattaccagccggaagcctac
gtgccgcagcgcgacttgttcattgagaaagattcttcgatcaatgagcatatcgagcaa
atgcgcctgtcctgcaccaaatcgctgatggagcggcgcgatgtggtgattattgcgacg
gtttcggcgatttacggtatcggtaacccgagcgaataccatcagatgatcctgaccctg
cgcgccaaggacaaggtcagccagcgtgacgtgattgcccgcctgattgcgatgcaatac
acgcgcaatgagattgatttcggccgcggcaccttccgtgtacgtggcgacaccatcgat
atcttcccggctgagcatgccgagctggcgatccggcttgagatgttcgatgacgagatt
gaaagtttacaactgtttgatccgctgaccggccgtgtcaaacaaaagatcccgcgcttc
accgtttatccgggttcgcactatgtgacgccgcgcgccaccgtgctgcgcgcgattgaa
acgatcaaggacgagttgcgcgagcgcctggaattcttccgcaaggaaagcaagctggtt
gaggagcagcgcctcgagcagcgtacccgctttgacctggaaatgatgcaggaaatcggc
tttaccaagggcatcgaaaactattcgcgccacctgagtggtgccaaggccggtgatccg
ccgccgacattggttgattacctgccgcaggatgcgctgatgttcatggatgagtcccat
gtactgatggggcagctcaacggtatgtataacggcgatagggcgcgtaaaaccaatctg
gttgattacggtttccgcctgccatcggcgctggacaaccggccgctgcgttttgacgag
ttcgaaggcaagatgcggcagatggtgttcgtctcggcgaccccggccgactatgaaaac
acacatgccgaccaggtggtcgagcaagtggtgcgaccgaccggcctggttgatccattg
atcagcgtgcgtccggcgtcgacccaggtggatgacctgatgtcggaaatcaccgaccgc
gtgaaaaaaaatgagcgcgtgctggtgaccacgctgaccaagcgcatggccgaacaattg
accgaattccttagtgataacggcatcaaggtacggtacctgcacagcgatatcgataca
gtggagcgggtcgagatcattcgcgatttgcgtctcggtaccttcgatgtgctggtcggg
attaacttgttgcgcgaaggcctggatttgcccgaggtatcactggtggcgatcctggat
gcggacaaggaaggcttcctgcgttccgagcgcagcctgatccagaccatcggtcgtgcc
gcgcgtaacctgactggtatggctatcctgtacggtgacaaggttaccgattcgatgcgt
cgtgcgattgacgaaaccgagcgtcgccgcgccaaacagatcgccttcaatactgcgaac
aacatcacgcctatcggcatcaagaagcatatccgtgagttgattgatggcgtctacagt
ccgcaggaagcgcgcctggaactgcaggtagcgcaagagcatgcgaagtatgaagcgatg
agcgagaagcaggtcagcaaggaaatcaagcgtctggaaaaactgatgctgggtcatgcg
aagaatctggaattcgaaaaagccgcacaggtacgcgatcagttgcgcatcctgaaagag
cagcttttcggcgcgcccggagcggataacgtcacaccgctggcaggataa
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