Janthinobacterium sp. Marseille: mma_2115
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Entry
mma_2115 CDS
T00561
Symbol
rnr
Name
(GenBank) exoribonuclease RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mms
Janthinobacterium sp. Marseille
Pathway
mms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
mma_2115 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mms03019
]
mma_2115 (rnr)
03016 Transfer RNA biogenesis [BR:
mms03016
]
mma_2115 (rnr)
Enzymes [BR:
mms01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
mma_2115 (rnr)
Messenger RNA biogenesis [BR:
mms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
mma_2115 (rnr)
Transfer RNA biogenesis [BR:
mms03016
]
Prokaryotic type
tRNA degradation factors
mma_2115 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Rrp44_S1
OB_RNR_1st
OB_Dis3
Dimerisation
CSD
TAF4
Motif
Other DBs
NCBI-ProteinID:
ABR89682
LinkDB
All DBs
Position
complement(2383187..2385637)
Genome browser
AA seq
816 aa
AA seq
DB search
MSQYSYTIPSREEILGILRTATGSHDASTLATALGVKPDEMDGLMRRLNAMERDGQIKPD
RAGNYQLAHSSNFIEGRVSSHRDGFGFLIPDDASADIFLPEKEMQKVLHGDRVQARIIGT
DRRGRPEGTIVEVVARANSHVIGRLLNENGVWVVAPEDKRIGQDIMLAGSPGKAKTGQVV
SVELTEQPSRFSQPVGKIVEVLGDIDDPGMEIEIAVRKYGVPHEFSEAAKKAAAKLPNEV
RAVDLHDRVDLRDVPLVTIDGEDARDFDDAVYCEPCKIGRADGFRLIVAIADVSNYVKPN
EALDVDALERSTSVYFPRRVIPMLPEKLSNGLCSLNPGVDRLTLVCDAVITAKGEIKAYQ
FYPAVIHSAARLTYTEVAAILGNTKGIEATKRPALVPHLLNLYGVYQALLQARHARGAID
FETTETYIVCNEVGKIQQILPRTRNEAHKLIEECMLAANVCAADLLQRHKHHSLYRVHAL
PTKEKLNQVRTFLKQVGLNLGGGDKPTASDYAELMPKIKNRPDALLLQTMLLRSMQQAVY
SPENIGHFGLSYEAYAHFTSPIRRYPDLLTHRAIKAILQGKRYEPRGMDTSTLNTMLSPA
ARKKHAQDKAEGKQKSEGDLAIWEALGIHCSANERRADEASRDVEAWLKCYFIRDKLGEE
FTGVISGVATFGIFVQLDSLFIEGMVHVTELGADHFKFDEARHELRGERTGIRYQLTDRV
TVQVSRVDLDARKIDLRLVNEPGIRTVLKNEARRADNEHQQRSKKAEKSVAGKTATKATA
PAATAPGKKAKAKRTPATPNKQRAPAVHPKSSKKKR
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
ttgagccaatactcttataccattcccagccgcgaggaaattctcggcatcttacgtacg
gccaccgggtcgcacgacgcctccacactagctactgctctcggtgtaaaacctgatgag
atggacggcttgatgcgtcgcctgaatgcgatggagcgcgatggacaaatcaaaccagat
cgcgccggcaattatcaacttgcccattcttccaattttattgaaggccgtgtcagcagt
cacagagacggcttcggtttcctgattcccgacgacgccagtgccgatatctttttgcct
gaaaaagaaatgcaaaaagttttgcacggcgatcgtgtgcaagcacgcatcatcggcacc
gaccgacgcggtcgccctgaaggcaccatcgttgaagtggtggcacgtgcaaacagccat
gtgatcggccgcctgctgaacgaaaacggcgtgtgggtggttgcacctgaagacaaacgc
ataggccaggacatcatgctggccggctcgccgggcaaggcaaagaccgggcaggtcgtc
agtgtcgaattgactgagcagccttcgcgtttcagccaaccggtcggcaagattgtcgaa
gtcctcggtgatatcgatgaccctggcatggaaatcgaaatcgccgtacgcaaatacggc
gtaccgcatgaattttccgaagcagcaaaaaaagctgcagccaaattaccaaacgaagta
cgtgctgttgatttgcatgaccgtgtcgatttgcgcgatgtcccgctggtcaccatcgat
ggtgaagatgcgcgtgacttcgatgatgcggtgtattgcgaaccgtgcaaaatcggacgt
gccgacggcttccgcctgatcgtagcgattgcagacgtcagcaactacgttaaaccgaat
gaagcgctggacgtcgatgcgctcgaacgcagcacctctgtgtatttcccgcgtcgtgtg
attccaatgttgccggaaaaattgtcgaacggtttgtgttcgctcaatcccggcgtggat
cgcctgacattggtatgcgatgccgtgattaccgccaagggcgaaatcaaggcttaccag
ttctatccggcagtgattcattcggccgcacgcctgacctataccgaagtggctgcgatc
ctgggtaataccaagggcatagaagccaccaagcgtccggcactggtgccgcacctgctg
aacctgtacggcgtctaccaggctttgctgcaggctcgtcatgcacgcggtgcgattgat
ttcgagaccaccgaaacctatatcgtctgcaatgaagtcggcaagatccagcagatcctg
ccgcgcacccgtaatgaagcgcacaagctgattgaagagtgcatgctggcagccaacgtc
tgtgcagccgatctcttgcagcgtcacaagcatcacagcctgtaccgtgtgcatgctttg
ccgaccaaggaaaaactgaatcaggtccgtaccttcctcaagcaggttggtttgaacctg
ggtggcggtgacaagccgacggcctcggattatgccgagctgatgccgaagatcaaaaac
cgtccggatgcattgctgctgcaaaccatgttgttgcgttcgatgcagcaagcggtgtac
agcccggaaaatatcggtcactttggtttgtcgtatgaagcatatgcgcacttcaccagc
ccgattcgccgctatccggatttgctgacgcatcgtgcgatcaaggccatcctgcaaggc
aagcgttacgaaccacgcggcatggataccagcacgctcaacaccatgctgtcaccggct
gcgcgcaagaagcatgcgcaagacaaggctgagggcaagcaaaagtcggaaggcgatctg
gcaatctgggaagcgctgggcatacattgttcggcaaatgaacgacgcgccgatgaagca
tcgcgcgatgtggaagcatggctcaagtgttacttcatccgcgacaagctgggtgaagaa
ttcactggcgtgatttccggcgtggcgacctttggtatcttcgtgcaactggattcgctg
ttcatcgagggcatggtgcacgtcaccgaactcggtgccgatcatttcaaattcgatgaa
gcacgccatgagttgcgcggtgagcgtaccggcatccgttatcagttgacggaccgtgtc
acggtacaagtcagccgtgtcgatctggatgcacgcaaaatcgatttgcgcctggtcaat
gaacccggcatccgcaccgtattgaagaatgaagcacgccgtgctgacaatgaacaccag
cagcgcagcaagaaagcggaaaaatcggttgcaggcaagacggcaactaaagctaccgca
cctgctgcaactgcacccggtaaaaaggccaaggccaaacgcacaccggccacacccaat
aaacagcgggcgccggcagtgcatcctaaatcaagcaagaagaagcgataa
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