Janthinobacterium sp. Marseille: mma_2929
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Entry
mma_2929 CDS
T00561
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mms
Janthinobacterium sp. Marseille
Pathway
mms03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mms00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
mma_2929 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mms03019
]
mma_2929 (recQ)
03400 DNA repair and recombination proteins [BR:
mms03400
]
mma_2929 (recQ)
Enzymes [BR:
mms01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
mma_2929 (recQ)
Messenger RNA biogenesis [BR:
mms03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
mma_2929 (recQ)
DNA repair and recombination proteins [BR:
mms03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
mma_2929 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
HHH
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABR88543
UniProt:
A6T272
LinkDB
All DBs
Position
complement(3283567..3285390)
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AA seq
607 aa
AA seq
DB search
MSKPELGAQALHILETVFGYSSFRGEQAEIVDVVARGGDALVLMPTGGGKSLCYQIPALL
RDGVGVVISPLIALMQDQVDALAEVGVRAAFLNSTQSFEESVRIERRLRSGDLDLLYVAP
ERLMTPRCLDMLETTKIALFAIDEAHCVSQWGHDFRPEYIRLSVLHERFPQVPRIALTAT
ADHQTRAEIAHRLQLDDARMFVSSFDRPNIRYQIVEKANGRKQVLDFIESEHPGDAGIVY
CLSRKKVEETAEFLNENGITALPYHAGMEFATRSKNQARFLREESIVMVATIAFGMGIDK
PDVRFVAHLDLPKSIEGYYQETGRAGRDGGAANAWMAYGLQDVVQQRRMIDESEADETFK
RVQSVKLDAMLGLCETLYCRRARLLDYFGQASTPCGNCDTCLNPPRSFDATVEVQKLLST
IYRVGQRFGAMHVLDVLRGVDSDKIKQWQHEEVSTFGIGSDRSEAEWRAILRQSIALGLV
SVDHESYGALKLTEAARPVLKGGEKVQLREYQKPLKSKRSSSKPKGFVETDLSTAEQAVF
EKLRWWRMETARKHNVPAYVIFHDATMREIAKAQPASLDDLRGVSGVGEKKLETYGADIV
ALIAEMD
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagcctgagctcggcgcgcaagcgctgcatatcctggaaacagtcttcggctac
tcatcgtttcgcggtgagcaagccgagatcgtggatgtggtcgcgcgcggcggcgatgca
ttggtattgatgccgactggcggcggcaagtcgctgtgctatcagattcccgccttgctg
cgcgatggtgtcggcgtcgtgatttcgccgttgattgccctcatgcaggatcaggtcgat
gcgctggccgaagtcggtgtacgtgccgccttcctgaattccacacaaagttttgaagaa
tcggtacgcatagaaagacgcttgcgcagcggtgaccttgacctgttgtatgtggcaccg
gaacgcctgatgacaccgcgttgcctggacatgctggaaaccaccaaaatcgccttgttt
gcgattgacgaagcgcattgcgtatcgcaatgggggcatgacttccgccccgaatatata
cgcctgtcggtcttgcacgagcgcttcccgcaggtgccgcgcattgcattgacagcgact
gcggatcaccagacccgtgccgagattgcgcatcgtttgcaactcgatgatgcacgcatg
tttgtttcatcctttgaccgccccaatatccgttaccagattgtggaaaaggcgaacggt
cgcaaacaggtgctggattttatcgaaagcgaacatccgggcgacgccggcattgtgtat
tgcctgtcgcgcaaaaaagtcgaagagactgccgagttcctcaatgaaaatggcattacg
gccttgccttaccacgccggtatggagttcgcgacgcgcagtaaaaaccaggcgcgcttc
ctgcgtgaagaaagcattgtcatggtggcgaccattgctttcggcatgggtatagataaa
cctgacgtccgctttgtcgcacatctggatttgccgaaaagcatagaaggctattaccag
gaaaccggtcgtgccggacgtgatggtggcgcggccaatgcatggatggcttacggcttg
caggatgtggtgcagcagcgccgcatgatagatgaatcggaagcggacgaaactttcaaa
cgggtgcaaagcgtcaagctggatgcgatgctgggtttgtgtgaaacgctgtattgtcgg
cgcgcacgactgctggattatttcggccaggcgtctacgccatgcggcaattgcgatacc
tgcctgaatccgccgcgttcttttgatgccactgtcgaagtgcagaaattgctgtctacg
atttaccgtgtcggccaacgctttggcgcaatgcatgtactcgatgtattgcgtggagtg
gattcagacaagatcaagcaatggcagcatgaagaggtgtccaccttcggtatcggctcg
gatcgcagcgaagcggaatggcgcgccattttgcgtcagtcgatcgcattgggtttggtc
agtgtcgaccatgagtcttacggtgcgctcaagctgacggaagcagcgcgtccggtcctg
aagggcggcgaaaaagtacaattgcgtgagtaccaaaaaccgctcaagtccaagcgttcc
agtagcaagccgaaggggtttgttgaaaccgatttgtcgacggcggaacaggctgtgttc
gagaaattacgctggtggcggatggagacggcgcgcaagcacaatgtgcctgcttatgtc
atcttccatgatgcgaccatgcgcgaaatcgccaaggcgcaaccggcgtcactcgatgat
ttgcgtggtgtcagcggcgtaggtgaaaagaagctggagacttacggcgcggatatcgtg
gccttaatcgcagagatggattaa
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