Janthinobacterium sp. Marseille: mma_2964
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Entry
mma_2964 CDS
T00561
Name
(GenBank) exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
mms
Janthinobacterium sp. Marseille
Brite
KEGG Orthology (KO) [BR:
mms00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mms03016
]
mma_2964
Enzymes [BR:
mms01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
mma_2964
Transfer RNA biogenesis [BR:
mms03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
mma_2964
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
ABR91045
UniProt:
A6T2A7
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All DBs
Position
complement(3324291..3326345)
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AA seq
684 aa
AA seq
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MNLFFDESGDFKAGVAMSQQGEAYQVEMPSGKRSKVRSKDVLLQFASPSPTEFMTDAQAI
AADIDLDFLWEVAGEEEFGFAELGAEYFGHEPKPHEAAGLILRLHAAPIYFYKKGKGRYK
AAPEASLKAALAGVEKKRQQALVQAQYVAELKAMRLPEAMRPIVLQLLFKPDKNSIEYKA
LDAACTELQMAPQRLMLAVGGISSAKDLHFSKFLFESFPKGTGFPEIALPTLPELPVADV
QAFSIDDVTTTEIDDAMSVTRLPDGKVCVGIHIAAPGLGIKRDDALDVIARQRLSTVYMP
GDKITMLPDELVEEYTLAEGRVCPALSLYVTLDPSDWSVISSETRAERVPIAANLRHNDL
DAYVTEDNLAADVGDYPYKEDIALLWKWAQVLEQGRMAKRESFGLRPEQNNRVDFNFYVE
NDVVSIQRRKRGAPLDKIVAELAILTNSSWGKLLHEHGVPGIYRAQGGGSGNGWAAKMQV
RMQTHAAPHQGLGVDQYAWSTSPLRRYTDLVNQWQILACIEHGVTAPLVAPFKQRDADLF
AIVSAFDAAYSAYAAFQADMERYWCLRWLSQEKGEAETMKVEAAVLKEEILRLVDIPLVI
KLSGMPQVARGSQVKLDLLRWDEVDLTVEARLLDIIQDAGATAAAELDDEMTDDMMEGDA
EPVPMEPELLEAAPEPAPNPASAE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaatctattttttgatgaatccggcgatttcaaagccggcgtcgcgatgtcgcagcaa
ggcgaggcataccaggttgaaatgccttccggcaaacgcagcaaggtgcgctccaaagat
gtcctgctgcagtttgccagcccgtcgccgacggaattcatgaccgatgcgcaagccatt
gcagcagatatcgacctcgattttctgtgggaagtggcgggcgaggaagagttcggcttt
gctgaattgggtgccgagtatttcggtcacgaaccgaaaccgcatgaagcagccggtttg
attctgcgcctgcatgcggcaccgatttacttctataaaaaaggcaagggtcgctacaag
gcggcaccggaagcctcgttgaaagcggcactggccggcgtcgaaaagaaacgccagcaa
gccctggtgcaagcgcagtatgtcgcagaattaaaagccatgcgtttgccggaagcgatg
cgtcccatcgtgctgcaactgctcttcaagccggataaaaattccatcgaatataaggcg
ctggatgcagcctgcactgaattgcaaatggcaccgcaacgcttgatgctggcggtaggc
gggatttcgtcagccaaggatttgcacttttccaaattcctgtttgagtctttccccaag
ggcactggctttccggaaattgctttgccgactttgccggaattgccggtggctgatgtg
caggcattttcgattgatgatgtaacgaccaccgagatcgatgatgcaatgtcggtcacg
cgcctgccggatggcaaggtttgcgtcggcattcatattgccgcaccgggtttgggtatc
aagcgtgacgatgcattggatgtgattgcacgccagcgcctgtctaccgtgtatatgccg
ggcgacaagatcacgatgttgccggatgagctggtggaagaatacacgctggcagagggt
cgggtttgtcctgcattgtccttgtacgtcacgctggacccgtccgactggtcggtgatc
tccagcgaaacacgggcggagcgggtgccgattgcagccaatttgcgccacaacgatctc
gatgcttatgtcaccgaagacaatttggcggcagacgtcggcgattatccgtacaaggaa
gatatcgcgctgttgtggaaatgggcgcaggtcctggagcagggccgcatggccaagcgc
gaaagctttggcttgcggccggaacaaaataatcgcgtcgatttcaacttttatgttgaa
aacgatgtggtatccatccagcgccgcaagcgcggcgcaccgctggacaagatagttgcc
gaactggcgatcctgaccaatagcagctggggcaagttgttgcacgagcatggcgtgcct
ggcatctatcgcgcgcagggcggtggttccggtaatggctgggcggccaagatgcaggtc
cgcatgcaaacccacgcggcaccccatcagggcctgggcgttgatcaatacgcgtggagt
acttcgccgctgcgtcgttataccgatctcgtcaatcaatggcaaatcctcgcctgcata
gagcatggcgtgactgcgccgctggttgctccattcaagcagcgcgatgctgatctgttt
gcaatcgtgtcagctttcgatgcggcttacagtgcgtatgctgccttccaggctgatatg
gagcgctattggtgcctgcgctggttgagccaggaaaaaggtgaagccgagaccatgaag
gtcgaagcggcagtcttgaaagaagaaatcctgcgcctggtcgatattccattggtcatc
aagctctcgggcatgccgcaagtggcacgcggttcgcaagtcaaactggatttgttgcgc
tgggatgaagtggatctgacggttgaagcgcgtctgctcgatattatccaggatgccggc
gcaacagcggcggccgaactggacgatgaaatgactgacgatatgatggaaggcgacgcc
gaaccggtaccgatggaaccagaattgctggaagccgcgcctgagccggccccgaatcca
gcctcggcagaataa
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