Janthinobacterium sp. Marseille: mma_3419
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Entry
mma_3419 CDS
T00561
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mms
Janthinobacterium sp. Marseille
Pathway
mms03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mms00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
mma_3419 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mms03021
]
mma_3419 (rpoC)
03400 DNA repair and recombination proteins [BR:
mms03400
]
mma_3419 (rpoC)
Enzymes [BR:
mms01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
mma_3419 (rpoC)
Transcription machinery [BR:
mms03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
mma_3419 (rpoC)
DNA repair and recombination proteins [BR:
mms03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
mma_3419 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Vps52_CC
Motif
Other DBs
NCBI-ProteinID:
ABR89599
UniProt:
A6T3L2
LinkDB
All DBs
Position
complement(3789673..3793917)
Genome browser
AA seq
1414 aa
AA seq
DB search
MKALLDLFKQVQQNEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEFGDDFTAFM
GAEGIRELLRAIDIDRDAEMLRQELKDSKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEIQEPVVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYASREAINAKGEGMMFPDVSEVIRAYDNK
MVELATRITVRITEYPKNVETGEFEKTVTRYETTVGRAILSEILPKGLPFSVLNRALKKK
EISRLINLSFRKCGLRATVVFADQLLQSGFRLATRAGISICVDDMLVPKQKVDIIATAES
EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDDVGKAMMDQLKVEDVTKRDGTKTTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGASMKALVEGGEVIEALRDRI
LGRVAANDIVNPETQATLYAAGTLLDEDMVEEIERLGIDEVKVRTPLTCDTRFGLCAQCY
GRDLGRGTLVNAGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTVR
FTATMRYVTNGKGGQIVISRSGEVLITDDHGRERERHKVPYGATLIVKDGMVIKAGTALA
TWDPLTRPIITEYTGTVKFENVEEGSTVARQIDEVTGLSTLVVIDAKRRGSVTKTVRPQV
KLLNEQGEEVKIAGTEHAVTIGFQVGALITVKDGQQVTVGEVLARIPTESQKTRDITGGL
PRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGNKHEFLITKDKQVLVH
DGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQVVDAGDANYIVGEQVERSELLDENDRVIALGKIPATYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDSWEAEE
RAALLQSEKAARAAEAEAQFADVSSTPDSDTDAS
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctattcaagcaagttcagcaaaatgaacaattcgacgcgatc
aaaattggtctggcgtcacctgaaaaaatccgttcgtggtcctacggcgaagttaaaaag
ccggaaaccatcaactatcgtacgttcaagccagaacgcgacggcctgttctgcgcaaaa
atctttggccctatcaaagattacgaatgcctttgcggcaaatacaagcgcctgaaacac
cgcggcgttatctgcgaaaaatgcggcgttgaagttacgctggccaaagtgcgtcgtgaa
cgcatgggccacatcgaactggcatcgccaaccgcgcacatctggttcctgaaatcgctg
ccatcccgtttgggtatggtgctggacatgaccctgcgggatatcgaacgcgtcctgtat
ttcgaagcctacgttgtgaccgatccaggcatgaccccgctgaaaaaatgccagatcatg
tcggaagacgactacgctgccaaatacgaagaattcggcgacgacttcaccgctttcatg
ggcgctgaaggtatccgcgaattgctgcgcgctatcgacatcgatcgcgatgctgaaatg
ctgcgtcaggaattgaaagattccaaatccgaagccaagatcaaaaaatacgcgaagcgc
ctgaaagtgctggaagcgttccaacgttcgggtatcaaacctgactggatgatcatggaa
gtgttgccggtcttgccgccagaactgcgcccattggtgccgctggatggtggtcgtttc
gcaacttccgatctgaacgatctgtatcgccgcgttatcaaccgtaacaaccgtttgaag
cgtctgatggaactccgcgcgccggaaatcatcacccgtaacgaaaaacgtatgttgcag
gaagcagttgactcactgctggacaacggccgtcgtggcaaagcgatgaccggcgccaac
aagcgtccactgaaatcgctggccgaaatgatcaaaggcaagggcggtcgtttccgtcaa
aacttgctgggcaaacgcgtcgattactcgggtcgttccgttatcgtcgtgggcccacaa
ctgaaattgcatcaatgcggtttgccgaaactgatggcgctggaactgttcaagccattc
attttcaacaagctcgaattgatgggcctggctaccaccatcaaggcagctaaaaagctg
gttgagatccaggaaccagtcgtttgggacatcctggaagacgtgatccgtgaacatccg
gtcatgttgaaccgtgcacctaccttgcaccgtctgggcatccaggcgtttgagccggtc
ctgatcgaaggtaaagcaattcaattgcacccactggtctgcgctgcatttaacgccgac
tttgacggcgatcaaatggcggtccacgttccactgtcgatcgaagcacagatggaagca
cgcacattgatgctggcttcgaacaacatcctgttcccatcgaacggtgaaccatcgatc
gttccttcgcaagatatcgtgttgggtctgtactacgcgagccgcgaagcgatcaacgcc
aagggcgaaggcatgatgttcccggacgtgtccgaagtcatccgtgcttacgacaacaaa
atggttgaactggcgacccgtatcactgttcgtatcaccgagtatccaaaaaatgtggaa
accggcgaattcgaaaaaacagttacccgttacgaaaccacagtcggtcgtgcgatcctg
tccgaaattctgcctaaaggcttgccgttctcagttctgaaccgcgcgctgaaaaagaaa
gaaatttcgcgtctgatcaacttgtccttccgtaagtgcggtctgcgcgcaacggttgtg
ttcgctgatcaactgctgcaatcgggcttccgcctggcaacccgtgccggtatctcgatc
tgcgtcgacgacatgctggtgcctaaacaaaaagttgacatcattgcgaccgctgaaagc
gaagttaaacaaatcgaacagcagtactcgtccggtctggttaccgctggcgaacgttac
aacaaagtggttgatatctggggcaaggcaggcgatgacgtcggcaaggccatgatggat
caactcaaggttgaagacgtcaccaaacgtgatggcaccaaaacaacacaagaatcgttc
aacgcgatttacatgatggccgactccggtgcgcgcggttccgcagcacagattcgtcag
ctggccggtatgcgtggcctgatggcgaaaccggatggttccattattgaaacgccgatc
accgcgaacttccgcgaaggtctgaacgttttgcagtacttcatctcgactcacggtgca
cgtaaaggcctggccgatactgctctgaaaacagcgaactcgggttacctgacacgtcgt
ctggttgacgtgacgcaagatctggttgtgatcgaagatgattgcggcacctcgaacggc
gcgtcgatgaaggcgctggttgaaggcggtgaagttattgaagcattgcgtgaccgtatc
ctgggtcgcgttgctgcgaacgacatcgtcaatcctgaaacacaggcaaccctgtacgcg
gccggcaccttgctggacgaagacatggttgaagaaatcgaacgcctcggcatcgatgaa
gtaaaagtacgtacaccgctgacttgcgacacccgcttcggcctgtgtgcacaatgttac
ggtcgtgacctcggccgcggcacactggttaatgccggtgaagcagttggtgtggttgca
gcgcaatcgattggtgagccaggtacacagctgaccatgcgtaccttccacattggtggt
gcggcttcgcgtgcagcagtggcatcgtcggtcgaagcgaaatcgaacggtaccgttcgt
ttcaccgcgaccatgcgttatgttaccaacggcaaaggcggccagatcgtcatttcccgt
tccggtgaagtgttgattaccgacgaccacggccgtgaacgtgaacgtcataaagtaccg
tacggcgcaaccctgatcgtcaaggacggcatggttatcaaggccggtaccgcattggca
acatgggatccattgacccgtcctatcattaccgaatacaccggtacggtgaaattcgag
aacgtagaagaaggttcgaccgttgctcgtcaaatcgacgaagtaaccggtttgtcgacc
ctggttgttatcgatgcgaaacgtcgcggttcggttaccaaaactgtacgtccacaggtc
aaactgttgaacgaacaaggcgaagaagtgaagatcgccggtaccgagcacgcagtgacc
atcggcttccaggttggcgcgctgattactgttaaagacggccagcaagttaccgtcggt
gaagtattagctcgtatcccgaccgaatcgcagaaaacacgtgacatcaccggtggtctg
ccgcgtgttgccgagttgttcgaagcgcgttcgccgaaagatgccggtatgctggctgaa
gtcacaggtactgtggcattcggtaaggaaaccaaaggtaagcaacgtctggaaatcaca
gacatggacggcaacaagcacgagttcctgattaccaaggacaaacaagtgctggtacat
gacggccaggttgtgaacaagggtgagatgattgttgacggcccagccgatccgcaagac
atcctgcgcctgttgggtatcgaagcgctggcacgttacatcgttgacgaagttcaggac
gtgtaccgtttgcaaggcgtgaagatcaacgacaagcacattgaagtgatcgtgcgtcag
atgttgcgtcgcgttcaagtggttgatgccggcgatgcgaactacatcgttggtgaacag
gttgaacgttccgaattgctggatgaaaacgatcgcgtcattgctctgggcaaaatccct
gcaacctacgaaaacgtattgctaggtattaccaaagcatcgctgtcgaccgactccttc
atctcggctgcttcgttccaggaaacaacacgtgtcctgaccgaagctgcgatcatgggc
aaaaaagacggcttgcgcggtctgaaagaaaacgtgatcgtcggtcgtttgatcccggct
ggtacaggcctggcattccaccgtgctcgcaaggaaaaagattcgtgggaagcagaagaa
cgtgcagcactgttgcaatcggaaaaagctgcccgtgcagcagaagccgaagcgcaattt
gcggacgtttccagcaccccggatagcgataccgacgcgtcctaa
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integrated database retrieval system
