Methylomonas methanica: Metme_0630
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Entry
Metme_0630 CDS
T01511
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mmt
Methylomonas methanica
Brite
KEGG Orthology (KO) [BR:
mmt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mmt03016
]
Metme_0630
Enzymes [BR:
mmt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Metme_0630
Transfer RNA biogenesis [BR:
mmt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Metme_0630
Prokaryotic type
tRNA splicing ligases
Metme_0630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AEF99074
UniProt:
G0A427
LinkDB
All DBs
Position
677999..679195
Genome browser
AA seq
398 aa
AA seq
DB search
MPIQTLITKGKVPVKIYTGQVDPAAYQQLLNLSQMPFVHSHIAVMPDVHCGKGATVGSVI
PTLGAIIPAAVGVDIGCGMCAVRLSLNANDLPDSLRSLRLALEAAVPVGFAMHRSDRAQR
STINALGVGLHQILDKHPKVNAKQNKPYQTWIRQLGTLGGGNHFIELCLDESDKVWIMLH
SGSRGIGNVIGEYFINLAKKDMGQHLLNLPDKDLAYFREGAKHYDDYLLAVGWAQDYAMT
NRREMLRLIGEVLHKKWPKLTFTKEVINCHHNYVAHEWHFDAKVLITRKGAIRAGEGELG
IIPGSMGARSYVVRGKGNEQSFCSCSHGAGRLMSRSEAKRRYNADDVAHQTQGIECRKDS
GVIDEIPAAYKDIEQVMAQQSDLVEVVHQLRQVMCIKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgcctattcaaaccctgattaccaaaggcaaagtgccggtcaagatttacacaggccaa
gttgatccggcagcctatcaacaattgctaaacttgtcgcagatgccgtttgtgcacagc
catattgccgtgatgcccgatgtgcattgcggcaaaggtgccacggtcggttcggtgatt
cctacgctgggagccattataccggcagcagtcggcgtggatattggttgcggcatgtgc
gcggtgcgtttgtcactcaatgccaacgatttgccggacagcttacgttcgttgcggctg
gccttggaagcggcggtgccggtcggttttgccatgcaccgtagcgatcgagcgcaacgc
tcgaccattaacgcacttggcgtgggtttacatcaaattttagataaacaccccaaggtc
aatgccaagcaaaacaaaccctatcaaacctggatacgccagttaggcacgctaggcggc
ggcaatcatttcatcgagttgtgcctggatgaaagcgataaagtgtggatcatgctgcat
tccggcagccgaggcataggcaatgtgattggtgagtatttcatcaatctggctaaaaaa
gacatggggcagcatttgctgaatttgccggataaagacttagcctattttcgcgaaggt
gcgaaacactacgacgattatttgctggccgtcggttgggcgcaagactatgccatgacc
aatcgccgcgaaatgctgcgtttaatcggcgaggtattgcataaaaaatggccgaaatta
accttcaccaaggaagtcattaactgccatcacaactatgttgctcacgaatggcatttc
gacgccaaagttctgatcacccgtaaaggcgcgattcgcgccggcgagggcgaactgggg
attatcccgggcagcatgggcgcacgttcttacgttgtgcgcggtaaaggtaacgaacaa
tccttttgttcgtgctcgcacggcgccggacgcctgatgagtcgtagtgaggccaagcgc
cgttacaatgccgacgacgtcgcccatcaaacacagggtattgaatgccgtaaagacagc
ggtgtgatcgatgaaatcccggcggcgtataaggatatcgaacaggttatggcgcagcaa
agcgacttagttgaagtcgtgcatcaattacggcaagtgatgtgcattaaaggctag
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