Methylomonas methanica: Metme_1916
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Entry
Metme_1916 CDS
T01511
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mmt
Methylomonas methanica
Pathway
mmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Metme_1916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmt03019
]
Metme_1916
03009 Ribosome biogenesis [BR:
mmt03009
]
Metme_1916
Enzymes [BR:
mmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Metme_1916
Messenger RNA biogenesis [BR:
mmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Metme_1916
Ribosome biogenesis [BR:
mmt03009
]
Prokaryotic type
rRNA helicases
Metme_1916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AEG00332
UniProt:
G0A4B6
LinkDB
All DBs
Position
complement(2107610..2109352)
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AA seq
580 aa
AA seq
DB search
MSDTPTATPSFKDLALSEPVLKALQTIGYETPSPIQAQIIPFVMAGRDVLGQAQTGTGKT
AAFAMPILTRIDIKQKDPQALVLAPTRELAIQVAEAFQSYAAHIKGFHVLPIYGGQDYSV
QLRQLNRGAHVVVGTPGRVMDHMRRGTLKLDQLKTLVLDEADEMLRMGFIDDVEWILEQT
PSTRQTALFSATMPTEIRKIAQKYLSNPEQVTIKVKTTTAANIRQRYWFVSGLHKMDALT
RILEAENFDGMIIFVRTKTATIEVAEKLEARGFSASAINGDMSQALRERAIENLKNGKLD
ILIATDVAARGLDVDRITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFVSPREKRLL
ANIEQATKQKVEEMQLPSTEFINNARVNRFKQRITDTLAAEELSFYNQLINQYQVEHDVP
AIDIAAALAKLLQGDTPLLMKEVAKKPRKDADDKSRGKDRERDHGPKRERGRAGSVEMEL
FRIEVGHSDGVKPGNIVGAIANETGIDGDHIARIKIEENYSTVELPAGMPKDLFQALKRV
RVVGKPLNISKYDPSLIKKDKSKKRVGSTSKRGKNHDQNS
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacacccccaccgccacgccgtccttcaaagatttagcattatccgaaccggtt
ttgaaagcgctgcaaaccatcggctacgaaacaccctctcccattcaggcgcaaatcatt
cccttcgtcatggctggccgcgacgtactcggacaggcacaaacaggcaccggcaaaacc
gccgcctttgccatgccgatactgactcgcatcgacattaaacaaaaagatccgcaagct
ttggtattagcccctacccgggagctggccattcaagttgccgaggcctttcaaagctat
gccgcccacatcaagggctttcacgtactgccgatctacggcggacaggattattccgtg
cagttgcgccaactgaatcgcggcgctcatgtcgtggtaggcactccgggccgggtcatg
gaccatatgcgccggggcacgctaaagctggaccaattgaaaaccctagtgctggacgaa
gcggacgaaatgctgcgtatggggtttatcgatgacgtggaatggattttggaacaaacc
ccatcgacccggcaaacggctttattttcggccacgatgcctaccgaaatccgcaagatt
gcccaaaaatacttgagcaatccggaacaagttaccatcaaagtgaaaaccaccactgca
gccaacattcgccagcgttactggtttgttagcggcttgcacaaaatggatgccttgacc
cgcatactggaagcggaaaactttgatggcatgatcatttttgttagaaccaaaaccgcc
actatcgaagtagcggaaaaactggaagcccgcggcttctcggcctcggcaatcaatggc
gacatgtcgcaagcgttgcgcgagcgcgccatagaaaacctcaagaacggcaagctggat
attctgatcgctaccgacgttgccgctcggggcctggatgtcgaccgtatcacgcatgtg
gtcaattacgatatcccttacgataccgaatcctacgtacaccgcattggccgcaccggt
cgcgcgggacggaccggcgatgcgattttattcgtttcgccgcgtgaaaaacgtttgctg
gccaacattgagcaagctaccaaacaaaaagtcgaggaaatgcagttgccttcgaccgag
tttatcaacaatgctcgcgttaaccgcttcaaacagcgtattaccgacaccttggccgcc
gaagaactcagcttttacaatcaactgatcaatcagtatcaggttgaacacgatgtaccg
gccatagatattgccgcggcactggccaagctgctacaaggcgatacgccgttattgatg
aaagaggttgctaaaaaaccccgcaaggatgcggacgacaaatctcgaggtaaagaccgt
gagcgcgatcacggccccaaacgcgagcgcggcagagccggcagcgtggagatggaacta
ttccgcatcgaggttggccatagtgacggtgtcaaacccggcaatatcgtcggcgccatc
gcgaacgaaaccggcattgacggcgatcatatcgcccgcatcaaaatcgaggaaaattac
agcacggtggaattgccagccggcatgcccaaagacctgtttcaagccttgaaaagggta
cgcgttgtcggcaaacctttaaatatttccaaatacgaccctagcctgattaaaaaagac
aaaagcaaaaaacgggttggttctacctcaaaacgcggtaaaaaccacgaccaaaactca
taa
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