Methylomonas methanica: Metme_3013
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Entry
Metme_3013 CDS
T01511
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mmt
Methylomonas methanica
Pathway
mmt03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Metme_3013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmt03400
]
Metme_3013
Enzymes [BR:
mmt01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Metme_3013
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Metme_3013
DNA repair and recombination proteins [BR:
mmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Metme_3013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
AEG01391
UniProt:
G0A2N8
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All DBs
Position
3345933..3346748
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AA seq
271 aa
AA seq
DB search
MPELPEVETSRRGITPHVLGKTFKDVIIRQPQLRWPVPEGLNSILPGLHLDKIERRGKYL
LLATKAGTLILHLGMSGNLRISDSGQPVLKHDHADFIFTDGTILRFNDQRRFGAILWTSE
SVEQHALLAALGPEPLSEAFNAEFLLKRCQNRRIPIKSLIMDSHIVVGVGNIYASESLFL
AGLHPTRPAEDIDLADCQRLCDAIKTVLLWAIEQGGTTLRDFVNAQGKPGYFQQSLSVYG
RAGQACSQCAEPIQQVKIGQRASYFCGNCQS
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactgcccgaagtcgaaaccagccggcgcggcattacgccgcacgtcctggga
aaaacctttaaagacgtcatcatccgccaaccgcaattgcgctggcctgtgccggaaggc
ttaaacagcatcctgccagggttacatctggataagatcgaacgacgcggcaaatatttg
ctgcttgccacaaaagccggcaccttaatactgcatctgggcatgtcgggtaatctgcgc
attagcgattcggggcaaccggttcttaaacacgatcacgcggatttcattttcaccgac
ggcaccatcctgcgctttaacgaccaacgccggttcggggctattttgtggacatcggaa
tccgtagagcagcatgccctattggccgccttgggacccgaaccgctttccgaagcattc
aatgccgagttcttgctgaagcgatgtcaaaatcgccggatacctattaaaagcctgatt
atggatagccacatcgtggtgggggtgggtaatatctatgccagcgaatccttgtttctg
gccggcctgcaccccacccggcccgcggaagatatcgacttagccgattgccaacgtcta
tgcgacgcgataaaaaccgtgttgctttgggcgatcgagcaaggcggcaccaccttgcgc
gactttgtcaacgcgcaaggcaaacccggttattttcaacaatcgctatcggtatacggc
cgtgccggccaagcgtgctcgcaatgcgccgaacccatccagcaagtcaaaatcggccag
cgcgccagctatttctgcggtaactgccaatcctga
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