Methylomonas methanica: Metme_3205
Help
Entry
Metme_3205 CDS
T01511
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mmt
Methylomonas methanica
Pathway
mmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Metme_3205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmt03019
]
Metme_3205
03009 Ribosome biogenesis [BR:
mmt03009
]
Metme_3205
Enzymes [BR:
mmt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Metme_3205
Messenger RNA biogenesis [BR:
mmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Metme_3205
Ribosome biogenesis [BR:
mmt03009
]
Prokaryotic type
rRNA processing factors
Metme_3205
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
CHP02642
DUF4901
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AEG01579
UniProt:
G0A4I8
LinkDB
All DBs
Position
3533852..3536044
Genome browser
AA seq
730 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQKLYDFDIEVPSKEQKKSNIYKGIITRVEPSLEAAFVNY
GAEKHGFLPFKEIAPEYRSGDGDDSKSTKANIREGQEIVVQIEKEERGNKGAALTTYVSL
AGTYLVLMPNNPKAGGISRRIEGDNRSELRETMSALEIPDSMGLIIRTAGSDKSAEELQW
DLNYLLQLWEAIERSSHEQTAPFLIFQESNVIIRALRDHLRGDIDEILIDQEGAFKLASN
FLKQVMPHNLSKAKLYQDSVPLFSRYQIETQIEMAYKREVSLPSGGSIVIDHTEALTSID
INSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMMSNKNQREVENRL
RDALKIDRARIQTGRISRFGLMEMSRQRLRPSLGDSTQLTCPRCKGQGTIRNVESVTLAV
LRLIEEEAMKKGTERVIAHLPIDCATFLLNEKRSAIQELETRLQVSVVVLPSKHIETPAY
DIERIKSLEGMEDKPSHLQIKEDDISVPEFAKQSAPKAEKAAVKEFLPDAPAPVQNKKTS
TSLIQRFWQRLIGQSKTAEKAEPAEKSSESRPKSSRNNRRDRDRDRPSGSRNNPRRGNKR
PSNPAQNTESPASNAENTQPPTETVENNETQPNKPNGDRPARRGRNRRRGPRNAGDRKPE
QSTGENGAGQERADAAPVAASPTPVAQTSESQPRPYNSEFAERKQRAEAEPQVARQSENA
PAPVSSVSED
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgcttatcaacgccacgcagcccgaagagctgcgagtggccttggtagat
ggtcaaaaactgtatgattttgacatcgaagtcccttcaaaagagcaaaaaaagtctaac
atttacaaaggcatcatcacccgggtagaacccagtctggaagccgccttcgtcaattac
ggcgccgaaaaacatggctttttgccatttaaggagattgcccccgaatacagatccggc
gacggagacgacagtaaatccaccaaagccaatatccgtgaaggccaggaaattgtcgtt
caaatcgagaaagaagaacgcggcaacaagggcgcggctttaaccacttacgtcagcctg
gccggcacctatctggtgctgatgcccaacaacccgaaagccggcggcatctcgcgccgg
atagaaggcgacaaccgcagcgaattgcgcgagaccatgtcggcactggaaatcccggac
agcatgggcttgatcatccgcacagccggctccgacaagagcgccgaggaattgcagtgg
gatttaaactatctgctgcaattgtgggaagccatcgaacgttccagccacgagcaaacc
gcgcccttcctgattttccaggaaagcaatgtgatcatccgcgccctgcgcgaccacttg
cgcggcgatatcgacgaaatcctgatcgaccaggaaggcgctttcaaactggcttccaat
ttcctgaaacaggtgatgccgcacaacttgagcaaagccaagctgtatcaggacagcgtg
ccgttgttcagccgttaccagatcgaaactcagatcgaaatggcttacaaacgggaagtg
tcgctgccgtccggcggttccatcgtcatcgaccacaccgaagcgctgacctcgatcgac
atcaactcggcccgcgccaccaaaggcagcgatatcgaggaaaccgcgctcaacaccaac
ctggaagcggccgacgaaattgcccgccaattgcgtttgcgcgacttgggcggcctgttc
gtgatcgactttatcgacatgatgtcgaacaaaaaccagcgcgaagtggaaaaccgcctg
cgcgacgccttaaaaatcgaccgcgcccgcatccagaccggccgtatctcgcgcttcggc
ctgatggaaatgtcccgtcagcgcttgcgcccgtccctgggcgactccacccagctgact
tgcccgcgctgcaagggccaaggcaccatccgtaatgtcgagtccgttacgttggcggta
ttgcgtttgatcgaagaagaggccatgaaaaaaggcaccgaacgggtaattgcccatttg
cctatcgactgtgccaccttcctgttgaacgaaaagcgctccgcgattcaggaactggaa
acccgactgcaagtcagcgttgtcgtattaccgagcaaacatatcgaaacgccggcctac
gacatcgagcgcatcaaatccttggaaggcatggaagataaacccagccatctgcaaatc
aaggaagacgacatcagcgtgcccgagttcgccaaacaatctgcgcctaaagccgagaaa
gcggcggttaaggagtttttgcccgacgcccccgccccggtacaaaacaaaaaaacctca
accagtttaattcaacgtttttggcagcgactgatcggtcagagcaaaaccgccgaaaaa
gccgaacccgctgaaaaaagcagcgaatcccgacctaaatccagccggaacaatcgccgt
gatcgcgaccgggatcgccccagcggtagccgcaacaatccgcgccgcggcaataaacgc
ccatccaacccggcgcaaaatactgaaagcccggcaagcaatgccgaaaacacgcaaccg
cccactgaaacggtggagaataacgagacgcaaccaaacaaacccaatggcgatcgcccg
gcacgtcgcggccgtaaccgtcgccgcggcccccgtaatgcaggcgacagaaaaccggaa
caatcgaccggagagaacggcgccggacaagagcgcgcggacgcggctcccgtcgcagcc
agcccgaccccggttgcgcaaaccagcgaatctcaaccccgtccctataacagcgaattt
gccgagcgcaaacaacgcgcggaagccgaaccgcaagtcgccagacaaagcgaaaacgcc
cctgctcccgtcagctcggtgtcggaagattaa
DBGET
integrated database retrieval system
