Methylomonas methanica: Metme_3253
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Entry
Metme_3253 CDS
T01511
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mmt
Methylomonas methanica
Brite
KEGG Orthology (KO) [BR:
mmt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmt03019
]
Metme_3253
Enzymes [BR:
mmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Metme_3253
Messenger RNA biogenesis [BR:
mmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Metme_3253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
T2SSE
AAA_25
NACHT
nSTAND3
RsgA_GTPase
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AEG01625
UniProt:
G0A5B9
LinkDB
All DBs
Position
complement(3579542..3583432)
Genome browser
AA seq
1296 aa
AA seq
DB search
MSAHDTVKQLAKNLNHCMNTDRHAFKRQLDRLRSELNKGKDVAAGLAQLAGKIEGSTSRC
SQRKASVPAINYPDLPVSGKKDEIAELIKHNQVSIVCGETGSGKTTQLPKICLELGRGVK
GLIGHTQPRRIAARTVADRIAEELGQPIGQAVGYKVRFHDQTHPNSLVKLMTDGILLAES
QNDPYLNQYDTIIIDEAHERSLNIDFLMGYLRWLLPKRSDLKVVITSATIDPERFAKHFN
NAPIVNVSGRTYPVDVRYRPIELIEEDDETSADLQQAILDAVDELYRDLRGDILIFLSGE
HEIRETTESLRKSHNNGRYEVLPLYSKLSVAEQERVFKPAGNKPRIVLATNVAETSLTVP
GIRCVIDSGHARISRYSVRSKIQRLPIERISQASANQRAGRCGRVAEGICIRLYSKEDYL
ARPEFTDPEILRTNLSSVILQMAALKLGDIEDFPFVEPPEDKMIRDGKNALFEVDALDKQ
GQLTDTGRQLAKIPTDPKLARMLLAAAELGSLHEVAIIVSALSIQDPRDKPADKLHLAEA
KHAQFKAEDSDFLTLLNLWNAFEEQKKHLTNNKLRKYCQDNFLSYIRMREWHDIHTQIMQ
VARGDLRLKTSGNPANYEQIHMALLPGLLSNIGFRHEQYEYLGARGLKFFIFPGSGQHKA
RPKWIMAAEQVETSKVYARTVAKIEPEWIERCAQHLVKRNYYDPHWEKSAGRCGVYERTL
LFGLTLQAKRKVPYENVDPKAARDMFMRHALVNQDYHSNAPFFKANEKLLEEVGYIQHKG
RRVDLVEDEEWLYQFYDKKLPAEIVSGIALDQWRKKVERDNPKILFLTKEDLTRHDDNQI
NDWDFPDSKKIGDLSIELHYRFDPGHDEDGVTAIVPVHQLNQIRQMPFDWLVPGMLEEKV
TALIKSLPKHLRKHFVPVPNTAKACLEIEPDFKGSLYEWLSNRLRKLTGEAIPLNEWQPD
SLPDHLKMNFRVVDDKGRALGYGRNLAKLQAEHATKAGDSFDKLAQDEINHTGCIAWVFD
DLPDTWQFMQKGQTFIGYPAVVDEGETVGVKIMETQQKAERAHFAGLTKLFQLQCRKDAQ
YILKNSGVSAALQLAYNQLPKHPLLKSRFGEFKNDLLFLIFSSVFVETAEIRSQAAFEAR
FVEKKSSLIGVSNQVGKQVTEIMAHYQSIRQQLKQPGIGPALKLDVENQLSLLLYCGFIR
YTPLAQLQAMPRYLKAIAFRLDKQKPDSADVQGLNRLWQRYWQHVEKQLKTVQPMPEREL
FRWSLEELRVSVFAQQLKTAFPVSVQRLEKQWNEMF
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctcacgacaccgttaaacaactcgccaaaaatctgaaccactgcatgaacacc
gaccgccatgccttcaagcggcagttggatcggttgcgcagcgagttgaacaaaggcaag
gatgtagcggcgggtttggcgcaattggccggtaaaatagaaggctcgaccagccgttgc
agccaacgtaaagcgtctgtgccggcgatcaactatccggatttgccggtcagcggcaag
aaggacgagattgccgaattgatcaaacacaatcaagtgagcatcgtttgcggcgaaacc
ggttccggcaagaccacccagttaccgaaaatctgtctggaattgggtcgtggcgtgaaa
ggtttgatcggccacacccagcctaggcggattgccgcccgcaccgtggcggaccggatt
gcggaagagctgggccagcccattggtcaggcggtgggatataaagtacggtttcacgac
cagacccatcccaattcgttggtcaaattaatgaccgacggtattctgctggcggagtcg
caaaacgatccatacttgaatcaatacgacaccatcatcattgatgaggcacatgaacgc
agcctgaatatcgattttttaatgggctatctgcgttggctgttaccgaaacggtcggat
ctgaaagtcgtcatcacctccgccaccatcgatccggaacgcttcgccaagcattttaat
aatgcccccatcgtcaatgtctccggtcgtacttatccggtggatgtgcgttaccggccg
attgagctgatcgaagaagacgacgaaacgtcggccgatttgcagcaggcaatattggac
gcagtggatgaactgtaccgggacttgcgcggcgacattttgatctttttaagcggcgaa
cacgagattcgcgagaccaccgaatccctgcgcaagtcgcacaacaacggccgctacgag
gtattgccgctgtattccaaactgagcgtggccgaacaggagcgggtatttaaaccagcc
ggtaacaaaccgcgcatcgtgttggccaccaacgtagcggaaacttcgttaaccgtgccc
ggcatccgctgcgtgatcgactcaggccacgcccgcatcagccgttacagcgtacgcagc
aagattcagcgcctgccgattgagcgcatctcgcaagccagcgccaatcaaagggcaggg
cgttgcggtcgggtggcggagggcatctgcattcgcttgtattccaaggaagattatctg
gcccggccggagtttaccgatccggaaattctgcgtaccaatctgtcgtcggttatattg
cagatggcggcgctgaaactgggcgacatcgaggattttccgttcgtcgagccgccggaa
gacaagatgatccgcgacggcaagaatgccttgttcgaagtggatgcgctggacaagcaa
ggccagcttaccgataccggccgccaactggccaagataccgaccgatccgaaattggcg
cgtatgttgttggccgccgcagaactggggtccttgcacgaggtggcgattatcgtttcg
gccttgagcatacaagacccgcgcgataaaccggcggacaagctgcatctggcggaagcc
aaacacgcccagtttaaggccgaagattcggattttctgaccctgttgaatctgtggaac
gcctttgaggaacagaaaaaacacctgaccaacaataaactgcgcaagtattgccaggac
aactttctatcctatattcgcatgcgcgaatggcacgatatccacacccagatcatgcag
gtggcgcgcggcgatttgcgcttaaaaaccagcggcaatccggccaattacgagcagata
cacatggcgctgctgccgggtttgctatccaatatcggttttaggcacgagcaatacgaa
tatctcggtgcgcgcggtttgaaattctttatttttcccggctcgggccagcataaggcg
cggccgaaatggatcatggccgccgaacaggtggaaaccagtaaagtctatgcccgtacc
gtggccaagatcgaaccggaatggatagagcgctgtgctcaacacttggtcaaacgcaat
tactacgatccgcattgggagaaaagtgccggccgttgcggcgtctacgaacgcacgctg
ttatttggtttgaccttgcaggctaagcgcaaagtaccttatgaaaacgtcgacccgaaa
gccgctcgcgatatgtttatgcgtcatgctttagtgaatcaggattatcattccaatgcg
ccgttttttaaggctaatgagaaattattggaggaagtgggctatatccagcacaaaggc
cgccgggtggatttggtggaagacgaggagtggctataccagttttacgataagaagctg
ccggccgaaatcgtcagcggcattgcgttggaccaatggcgcaaaaaagtagagcgcgac
aatccgaaaattttatttttaaccaaggaagatttaacccgacacgacgacaatcaaatc
aacgattgggattttccggacagcaaaaaaatcggcgatttaagcatcgaactgcattac
cgattcgatcccggtcacgacgaagacggtgtaacggcgattgtaccggtgcatcagctg
aatcaaatccggcaaatgccgttcgactggctggtgccgggcatgctggaagaaaaggtc
acagccttgatcaaatcgctacccaaacacttgcgtaaacacttcgtcccggtgcccaat
accgccaaggcctgtctggaaatcgagccggatttcaaaggttccttgtatgagtggctt
agtaaccgcttgcgtaaactgaccggcgaagccattccgctcaacgaatggcaacccgat
agtctgccggatcatttgaaaatgaatttccgagtggtggacgataagggcagggcgctc
ggctacggccgcaatctggctaaattgcaggcggaacacgcaaccaaagccggcgacagt
ttcgataaactggcgcaggatgagatcaatcacaccggctgcatcgcctgggtgttcgac
gatttgccggacacttggcagttcatgcaaaaaggccagacctttatcggctatccggcc
gtcgtcgacgaaggcgagacggttggggtcaaaattatggaaactcagcagaaagccgag
cgggcgcattttgccggcctgaccaagttgtttcagttgcagtgccgtaaagacgcgcaa
tacattttaaaaaatagcggcgtttccgcggcgttgcagttggcttataaccagttgccc
aaacacccgcttttaaagtcccgcttcggcgagtttaaaaacgatctgctgtttttgatt
tttagcagcgtgtttgtggaaactgccgagattcgcagtcaagcggcctttgaagcgcgc
tttgtggagaaaaaatccagcttgatcggcgtcagcaatcaagtcggcaagcaggtcacg
gaaatcatggcacactatcaaagcatcaggcagcagctgaaacagccgggtattggtccc
gctttaaagttggatgtggaaaatcagctaagtttattgttgtactgcggttttattcgc
tacaccccgctggcgcagttgcaggccatgccgcgatacctgaaagccattgcctttcgg
ttggataagcaaaagccggattcagccgatgtgcagggcttgaatcgtttatggcagcgc
tattggcagcatgtggaaaaacagttgaaaaccgttcagcccatgccggaacgcgaattg
ttccgctggagcctggaagagttgcgcgtctcggtgtttgcccagcaattgaaaaccgca
tttccggtttcggtgcaacgcctggaaaagcaatggaacgaaatgttttga
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integrated database retrieval system
