Methylomonas methanica: Metme_3304
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Entry
Metme_3304 CDS
T01511
Name
(GenBank) Sigma 54 interacting domain protein
KO
K14414
transcriptional regulatory protein RtcR
Organism
mmt
Methylomonas methanica
Brite
KEGG Orthology (KO) [BR:
mmt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mmt03000
]
Metme_3304
Transcription factors [BR:
mmt03000
]
Prokaryotic type
Other transcription factors
Others
Metme_3304
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
Mg_chelatase
AAA
AAA_5
MCM
AAA_22
AAA_16
NACHT
AAA_19
ATPase_2
AAA_30
ABC_tran
AAA_14
AAA_33
NTPase_1
AAA_29
AAA_18
AAA_7
bpMoxR
T2SSE
AAA_2
Sec10_N
TniB
RsgA_GTPase
APS_kinase
Motif
Other DBs
NCBI-ProteinID:
AEG01675
UniProt:
G0A5G9
LinkDB
All DBs
Position
complement(3642457..3644046)
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AA seq
529 aa
AA seq
DB search
MKTVVISLLGTTLDNRGFNQKRWGRWRPTLSLCQQPDLLVDRLELLCQSRYQDIADLLSR
DIHSVSPETAVRQHNLLMPDPWDFESVYAELLDFARAYPFDLENERYLLHITTGTHVAQI
CLYLLTEARYLPGLLVQTSPPPRNQAVAGLYQIIDLDLSKYDQIASRFSKEHQEGTHYLK
GGIETRNLAFNKMIEQVEKVAVRSREPILLTGPSGSGKSQLAKRIYKLKKRRGQLAGALV
EVNCATLRGDNAMSALFGHVKGAFTGAATARKGLLAEADNGLLFLDEIGELGLDEQAMLL
RAIEDKRFMPLGSDRETGSRFQLIAGTNRNLFQQVEQGRFREDLLARINIWTYQLPSLQQ
RLDDLDANIDYELDKYSQKTNAMVGFNKQARADYLNFAKSPEATWVSNFRDLNASIIRMA
TLAEGGRITPDGVEEEIQRLRRNWQGTESRDGPDLETLIGKPLDLFDQLQLRQVVRICQT
SQTAADAGRKLFNLSRQQKNSGNDSHRLIQYLAKFGLDFKTVKQWAGQG
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccgtcgtcatcagtttgttgggtaccacgctggataatcgcggctttaaccaa
aagcgctgggggcgctggcgaccgaccttgtcgttgtgtcaacagccggatttgctggtc
gaccggctggaattgttgtgccaaagccgctatcaagacattgccgatctgttgagccgg
gatattcacagcgtgtccccggaaacggcagtccggcagcataatctgctaatgccggat
ccctgggatttcgaaagcgtttatgccgaactgctggattttgcccgcgcttatccgttc
gatctggaaaacgagcgctatttgctgcatatcaccaccggtacgcacgtggcgcaaata
tgcttgtatctattgaccgaagcccgctatttgcccggcttgctggttcagacctcgccg
ccgccgcgcaatcaggccgtggcgggtttgtatcagattatcgatctggatttgtccaaa
tacgatcagattgcctcgcgattttccaaggagcatcaagaaggcacgcattacttaaaa
ggcggtatcgaaacccgtaacttagcctttaataagatgatagaacaggtggaaaaggtc
gcggtccgttcccgggaaccgattttactgaccggaccctccggttccggtaaatcgcaa
ctggccaagcgcatttataagttgaagaaacgacgcgggcagttggcgggcgcattggtg
gaagtcaactgcgccaccttgcgcggcgacaatgccatgtcggctttgttcggtcacgta
aaaggcgcctttaccggcgcggccacggcgcggaagggtttgttggccgaagccgacaac
ggtttattgttcctggatgaaatcggcgagctgggtttggacgagcaggccatgctgctg
cgggcgatagaagacaaacgtttcatgcctttgggctcggatcgggaaaccggcagccgg
tttcagttgatcgccggcaccaaccgtaacttgtttcaacaggtggagcagggccggttt
cgggaggatttgctggcccgcatcaatatctggacttatcagctgccgtccctgcagcaa
cggctggacgatctggatgccaacatcgattatgagttggacaaatatagccagaaaacc
aacgccatggtcggctttaacaaacaggctcgggccgattatttaaactttgccaaatcg
ccggaggccacttgggtcagcaattttcgcgatctgaacgccagtatcatccggatggcg
accctggcggaaggtggcagaatcacgcctgacggggttgaggaggagattcagcgcttg
cgccggaactggcaaggcacggaaagccgggatgggcctgatttggaaaccctaatcggc
aagccgctggatttgttcgatcaattgcagttgcggcaggtggtgcggatttgccaaact
tcgcaaacggcagcggacgcgggcaggaaactgtttaacctcagccgccagcaaaaaaac
tccggcaacgacagtcacaggctgattcagtacctggccaaattcggcctggattttaaa
accgtcaaacagtgggccggtcagggctga
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