Methylomonas methanica: Metme_4336
Help
Entry
Metme_4336 CDS
T01511
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
mmt
Methylomonas methanica
Pathway
mmt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Metme_4336
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmt03019
]
Metme_4336
Enzymes [BR:
mmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Metme_4336
Messenger RNA biogenesis [BR:
mmt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Metme_4336
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Nup54_57_C
Motif
Other DBs
NCBI-ProteinID:
AEG02685
UniProt:
G0A326
LinkDB
All DBs
Position
4771869..4773203
Genome browser
AA seq
444 aa
AA seq
DB search
MKKAHLTETRFSNLELSDSIIKSLKEAGFINCTPIQDKSLPLALRDKDVAGQAQTGTGKT
ASFLLATFQRLINDESEQIKNPRALILAPTRELAIQIHKDALVLGKYLNLKFALIYGGTD
YQKQLDKLKTNVDIIIGTPGRIIDFYKQGAFTLENIQVTVMDEADRMFDLGFIKDIRFLL
RRMPPPEKRLNLLFSATLSYKVTELAYEHMNNPVLIRIESEEVTSKAINQIAYCPANDQK
IPLLLGLLKYHQPQRSIVFVNTKRCAERLDDYLEANGYKVAMLSGDVPQEKRQRLLNDFQ
ENRVTLLIATDVAARGLHIPDVSHVFNYDLPQDVEDYVHRIGRTARFGASGEAISFICEE
YAYSMPDIEDYIGEKVPVTSITPELLVEEVVKPQRKEPRERVVPHDKRAPQRPRQDRKPR
EFKPKSAEAAPSSAPENPPLPETP
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagcacatctgacggaaacacgttttagcaatctggagctttccgactccatt
atcaaaagccttaaggaagcaggatttatcaactgtaccccaatacaggataagtctttg
ccgctagcgttacgcgacaaagacgtcgcgggccaggcgcaaaccggcaccggcaagacc
gccagcttcctgctggccacttttcagcgcttaatcaacgacgaaagcgaacagatcaaa
aatccccgggccctgattttggcccccacccgggaactggcgattcagattcataaagac
gccttggtgctgggtaaatatttaaatttaaagttcgccttgatttacggcggcaccgat
tatcaaaaacagctcgataaacttaaaaccaatgtcgacatcatcatcggcacccccggg
cgtatcatcgacttttataaacagggcgccttcacgctggagaatattcaggtcacggtg
atggacgaggcggaccggatgttcgacttgggctttatcaaggatatccgcttcctgttg
cgccgtatgccgccgccggaaaaacgtctgaacctgctattttcggccacgctgtcgtat
aaagtgaccgaactggcttacgagcacatgaataacccggtgttgatccggatcgaatcg
gaggaagtcacctccaaggccattaatcaaatcgcctattgcccggccaacgaccagaaa
atcccgctgttactgggcttgctgaaatatcaccagccgcaacgcagtatcgttttcgtc
aataccaaacgctgcgctgaacggcttgacgactatctggaagccaatggttacaaggtt
gccatgctcagcggcgatgtgccgcaggaaaagcgccaacgcctgttgaatgattttcag
gaaaaccgggtcacgctgttgatagccaccgacgtggcggcccgcggcttgcatattccc
gacgtctcgcatgtgttcaattacgacctgccgcaggacgtggaagattacgtgcaccgc
atcggccgtaccgcccgcttcggcgccagcggcgaagccatcagctttatttgcgaggaa
tacgcgtattcgatgccggatatcgaagactatatcggcgaaaaagtgccggtcacgtca
attaccccggaattgctggtcgaagaggtcgtcaaaccgcagcgaaaagagccgcgcgaa
agagtcgtcccgcacgacaagcgcgcgcctcaacgcccgcgccaagaccgcaaacccagg
gaattcaagcctaagagcgcggaagcagccccttcgtcagcgcccgaaaatcctccactg
ccggaaactccgtaa
DBGET
integrated database retrieval system
