Mus musculus (house mouse): 107581
Help
Entry
107581 CDS
T01002
Symbol
Col16a1, 2700007F12Rik, A530052M23Rik, CA1F
Name
(RefSeq) collagen, type XVI, alpha 1
KO
K24339
collagen type XVI alpha
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
107581 (Col16a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
107581
NCBI-ProteinID:
NP_082542
MGI:
1095396
Ensembl:
ENSMUSG00000040690
UniProt:
Q8BLX7
LinkDB
All DBs
Position
4:129941638..129993070
Genome browser
AA seq
1580 aa
AA seq
DB search
MLTSWAPGLWVLGLWATFSHGTNIGERCPTSQQEGLKLEHSSDPSTNVTGFNLIRRLNLM
KTSAIKKIRNPKGPLILRLGAAPVTQPTRRVFPRGLPEEFALVLTVLLKKHTFRNTWYLF
QVTDANGYPQISLEVNSQERSLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVAGRVA
SVHVDCVSASSQPLGPRQSIRPGGHVFLGLDAEQGKPVSFDLQQAHIYCDPELVLEEGCC
EILPGGCPPETSKSRRDTQSNELIEINPQTEGKVYTRCFCLEEPQNSKVDAQLMGRNIQK
AERGTKVHQGTGVNECPPCAHSARESNVTLGPSGLKGGKGERGLTGPSGPKGEKGARGND
CVRVSPDAPLQCVEGPKGEKGESGDLGPPGLPGPTGQKGQKGEKGDGGLKGLPGKPGRDG
RPGEICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGEKG
SSGIPGKEGPGGKPGKPGVPGTKGEKGDPCEVCPTLPEGSQNFVGLPGKPGPKGEPGDPA
PAWEGLGTVGLKGDRGDPGIQGMKGEKGEPCSSCSSGVGAQHLGPSPGHGLPGLPGTSGI
PGPRGLKGEKGSFGDTGPAGVPGSPGPVGPAGIKGAKGEPCEPCTALSELQDGDMRVVHL
PGPAGEKGEPGSPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEPGIR
GPAGPKGEKGDGCTACPSLQGALTDVSGLPGKPGPKGEPGPEGVGHPGKPGQPGLPGVQG
PPGPKGTQGEPGPPGTGAEGPQGEPGTQGLPGTQGLPGPRGPPGSAGEKGAQGSPGPKGA
IGPMGPPGAGVSGPPGQKGSRGEKGEPGECSCPSRGEPIFSGMPGAPGLWMGSSSQPGPQ
GPPGVPGPPGPPGMPGLQGVPGHNGLPGQPGLTAELGSLPIEKHLLKSICGDCAQGQTAH
PAFLLEKGEKGDQGIPGVPGFDNCARCFIERERPRAEEARGDNSEGEPGCSGSPGLPGPP
GMPGQRGEEGPPGMRGSPGPPGPIGLQGERGLTGLTGDKGEPGPPGQPGYPGAMGPPGLP
GIKGERGYTGPSGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKGDQGFQGQPGFP
GPPGPPGFPGKAGAPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKD
GKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAM
GPQGRPGPPGHLGPPGQPGPPGLSTVGLKGDRGVPGERGLAGLPGQPGTPGHPGPPGEPG
SDGAAGKEGPPGKQGLYGPPGPKGDPGPAGQKGQAGEKGRSGMPGGPGKSGSMGPIGPPG
PAGERGHPGSPGPAGNPGLPGLPGSMGDMVNYDDIKRFIRQEIIKLFDERMAYYTSRMQF
PMEVAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGDIG
VGIAGENGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCF
GAMPMEQQYPPMKSMKGPFG
NT seq
4743 nt
NT seq
+upstream
nt +downstream
nt
atgttgacatcctgggctcccggcctgtgggtgctcgggctctgggccaccttcagccat
gggacaaatataggtgagcggtgcccaacttcacagcaagaaggactcaagctagaacac
agtagtgacccatcaaccaacgtgactggcttcaacctaatccgccgactgaacctcatg
aagacatctgccatcaagaagatccgcaaccccaaggggccactcatcttgaggctgggg
gctgccccagtgacccaaccaactcgacgagtgttccctcgaggcctcccagaggagttt
gccctggtcctgacagtgcttctgaagaaacacaccttccggaacacatggtacttgttc
caagtgactgatgcaaatgggtacccacagatctccttggaagtcaacagccaggagcgg
agtctagagctccgggcacagggccaagatggtgactttgtgtcctgcatcttcccagtg
ccccagctcttcgatctgcgttggcacaagctgatgctgagcgtggcaggccgtgtggcc
tctgtgcatgtggactgtgtctcagcttcctcccagcctctgggaccccggcaatccatc
cggcctgggggacatgtatttctgggcttggacgctgagcagggcaagccggtttcattt
gaccttcagcaggcgcacatctactgcgacccggagctggtgctggaggaaggctgctgt
gagatcttaccgggagggtgtcccccagagacctccaagtcacgccgggacacccagagc
aatgagctcattgagatcaatcctcagacagagggcaaggtctacacccggtgcttctgc
ttggaggaacctcagaacagcaaggtggacgcgcagctcatgggaagaaacatccagaaa
gcagaaagggggacaaaggtccaccaggggactggagttaatgagtgcccaccctgtgcc
cacagtgcccgggagagcaatgtcacacttggtccctctggcctcaagggagggaaaggc
gaacgaggcctgactggaccatcaggccccaagggagagaagggagcacggggcaatgac
tgtgttcgagtgtcccctgatgccccacttcagtgtgtagaaggcccgaaaggagagaag
ggagaatcaggggacttgggacccccaggactcccaggaccaacaggccagaagggccag
aaaggggagaagggtgatggaggcctcaaaggacttccaggaaagccaggacgagatggt
cggccaggagagatctgtgtcattggacccaaagggcagaaaggagacccaggctttgtt
gggcctgagggactggcaggagagcctgggccacctggcctccctggaccacctgggata
ggactgcctgggactcctggagatccaggtggcccaccaggccctaagggagaaaagggc
agctctggaataccaggaaaggaaggcccaggagggaagccggggaaaccaggagtgcca
gggactaagggagagaagggtgacccctgtgaagtgtgcccaacgctgcctgaagggtcc
cagaattttgtggggctccctggaaaaccagggcctaaaggggaaccaggtgatcctgct
ccagcctgggagggcctaggaactgtgggactgaaaggtgaccggggagatccaggcatc
caaggaatgaaaggagagaagggggagccctgctcatcctgtagttcaggggtcggagcc
cagcatcttgggccctctcctggccatggtttacctggccttccgggcacatctggaatt
cctgggccaagaggcctgaaaggggagaagggtagttttggcgatacaggaccggctgga
gttccgggatcaccaggaccagtgggaccagctggcatcaaaggggcaaagggggagccc
tgtgagccctgcacagccttgtctgagctacaagatggggacatgcgtgtggttcatctg
cccggcccagctggagagaagggagagcctgggtccccgggcttcgggctgcctgggaag
cagggtaaagcaggagagcgtggactcaaggggcagaagggggatgctgggaatccagga
gaccctggaacaccaggcatcacagggcagcctgggatatctggagagcctgggattcga
ggtcctgcaggaccaaaaggagaaaagggtgatggatgcactgcctgccctagcctgcag
ggggcgttgaccgatgtatcgggactgcctgggaaacctggccccaaaggagagccaggt
ccagaaggtgtgggccatcccggtaaaccaggccagcctggtctaccaggagttcaaggg
cccccaggaccgaagggcactcagggagagcctggacctccaggcacgggtgctgaggga
ccccagggggagcctggaacccagggtttgcctggcactcagggccttcccggacctcgg
ggaccacctggctcagctggggaaaagggtgcccagggatctccggggcccaaaggagcc
ataggacccatgggacctcctggtgctggtgtctcggggcctccgggccaaaagggatca
cgaggcgagaaaggtgaaccgggagagtgttcctgcccttctcggggagagcccatcttc
tcgggcatgccgggtgctccgggactatggatgggcagctcctcgcagccgggcccgcag
ggtcccccaggtgtccccggaccaccaggtccccccggaatgcctggattgcagggagtg
cctggacacaatggtttgccaggacagcccgggctcactgccgagctgggatccttaccc
atcgagaaacacctcctcaagagcatctgtggtgactgtgcccagggccagacggctcat
ccagccttccttctggagaaaggagaaaagggggaccagggcatccctggcgtgccaggt
tttgacaactgtgccaggtgcttcatagagagggaacgcccaagagctgaggaggccagg
ggagacaacagtgagggagaacctggctgttctgggagccctggcctgcctggtcctcca
gggatgccaggccaaagaggagaagagggtccacctggcatgaggggctctcccggtcct
ccaggccctattgggcttcaaggggagcgaggcctcacgggcctgactggagacaaagga
gaaccgggtcctccaggacaacctggctacccaggtgccatgggccccccaggactgcct
ggtatcaagggagagcgaggatacactggcccctcgggagagaagggcgaatcgggccca
ccaggatctgaaggccttccaggtccccaaggtccagcgggtccccgaggagagcgaggc
ccccaggggagctctggagagaagggtgaccagggatttcaaggccagccaggcttccca
ggcccaccgggtcctccaggattcccaggcaaagctggagctcctggcccacctggcccc
caagcagagaagggcagtgaagggattcgaggtccctcaggcttgcctgggtcccctggg
ccacccggccctcccgggattcagggccctgctgggctggacggactggacgggaaggac
ggcaagcctggcctgaggggggacccaggtcctgctggccctcccggactcatgggacct
ccaggcttcaaggggaaaacaggtcatcctggcctccctgggcctaagggtgactgtgga
aaacccggtcctcctggcagcagtggccggccaggggcagagggtgagcccggtgccatg
ggaccccagggacgaccaggacccccagggcatcttggtcctccaggccagccaggtcca
cctgggctctccactgtgggcctgaaaggagatcggggagtccctggagaaaggggcttg
gcgggcctcccaggccagcctggcacacccggacaccctggccctccaggtgagcctggt
tcggacggtgcagctggcaaagagggacctcctggaaagcagggactctatggaccccct
ggcccaaagggtgaccctggacctgcaggacagaagggccaagcaggagaaaagggaaga
tctggcatgccagggggtcctggcaagagcggctccatgggacctatcggaccaccgggg
cctgcaggagagagaggtcaccctgggtccccagggcctgcagggaaccctggattgcct
ggtttgccgggctctatgggagacatggtgaattatgatgatatcaagaggtttatcaga
caagagatcattaaactgtttgatgagaggatggcttactatacctccaggatgcagttc
cccatggaggtggcagcagctccaggccggccagggcctccggggaaggatggtgctcca
ggtcggccaggtgctccagggtcacccgggctccctggtcagataggccgagaaggacgc
cagggtttgccaggaatgagaggactgcctggtaccaaaggtgaaaagggagacattggt
gttggcattgcaggagaaaatggtctccctggccctccaggtcctcaagggcctccaggt
tatggcaagatgggtgcaactggaccaatgggccagcaaggtattcctgggatccctggg
cccccgggtcccatgggccagccagggaaggcaggccactgcaacccctcagactgcttt
ggggccatgccaatggagcagcagtacccacccatgaagagcatgaaggggcctttcggt
tga
DBGET
integrated database retrieval system
