Mus musculus (house mouse): 108077
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Entry
108077 CDS
T01002
Symbol
Skic2, 4930534J06Rik, Ddx13, SKI, Ski2, Ski2w, Skiv2l
Name
(RefSeq) SKI2 subunit of superkiller complex
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108077 (Skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmu03019
]
108077 (Skic2)
Enzymes [BR:
mmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108077 (Skic2)
Messenger RNA biogenesis [BR:
mmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108077 (Skic2)
mRNA degradation factors
3'-5' decay
Ski complex
108077 (Skic2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
ALTTAQ_rpt
Motif
Other DBs
NCBI-GeneID:
108077
NCBI-ProteinID:
NP_067312
MGI:
1099835
Ensembl:
ENSMUSG00000040356
UniProt:
Q6NZR5
Q8C2W7
LinkDB
All DBs
Position
17:complement(35058202..35069180)
Genome browser
AA seq
1244 aa
AA seq
DB search
MMETERLVLPPLDPLNLPLRALEVGCTGRWELLNVPGPPESTLPHGLPPCAPDLCQEAEQ
LFLSSPAWLPLHGVEHSARKWQRKTDPWSLLAAVETPVPSDLQAQRHPTTGHILGYKEVL
LENTNLSATTSLSLRRPPGPASQSLWGNPTQYPFWPGGMDEPSITDLHTREEAEEEIDFE
KDLLTVPPGFKKGVDFAPKDHPAPVPGLLSLSRLLEPLDLSGGDEDEGEAAGGPRGDNAS
PSPSGTPLVRASSLEDLVLKEAATVVSTPEPPKPPPQEQWAVPVDVTSPVGDFYRLIPQP
AFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIK
ALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFD
EVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVAR
PVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTQGYYAAVEAKKERMSKHAQTFGAKQPTH
QGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLF
LQRCLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATE
TFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRV
PEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSKAHE
QALADLTKRLGALEEPDVTGQLADLPEYYSWAEELTETQNMIQRRIMESVNGLKSLSVGR
VVVVKNEEHHNALGVILQVSSNSTSRVFTTLVLCDKPVVSDNPRDKGPATPDVPHPDDLI
GFKLFLPEGPCEHTVAKLQPGDVAAISTKVLRVNGEKISEDFSKRQQPKFRKDPPLAAVT
TAVQELLRLAQSYPAGPPTLDPINDLQLKDVAVVEGGLRARKLEELIRGAQCVHSPRFPA
QYVKLRERMQIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVAC
AMSSHELLLTELMFDNALSALRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGVERVKAVA
KRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQR
LAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacggagcgactcgttctgcctcccctagatcccctgaacttaccccttcga
gctctggaagtggggtgcactggccgttgggagctgctgaacgtgccagggcctccagag
agcactctcccccatggcctccctccatgcgccccagatctgtgccaggaagcagagcag
ctgtttctgtcgtctccagcctggcttcctctacacggtgtagagcactcagctcgaaaa
tggcagaggaagacggatccctggtcactcctggctgccgtggagactccagtcccatct
gaccttcaggcccagagacacccaaccacaggccatatactgggctataaggaggtcctg
ctggagaacacaaatctgtcagctacaacctccttgtcccttcgccggcctccagggcca
gcctcccagtcgctatggggcaatccaacacagtaccctttctggccaggtgggatggat
gagcccagcataactgatctgcatactcgggaggaagctgaggaggagatagactttgag
aaagatcttctcactgtcccacctggcttcaagaaaggggtggattttgcccccaaagat
catccagctcctgtgccaggtttgctcagcctcagccgtctgctggagcctcttgatctg
agtggaggtgacgaggatgaaggcgaggcagcaggaggccctagaggggacaatgcctcc
ccctccccctctggtactcccctggtccgagcaagcagcttggaggatctagtgttgaag
gaagctgccacagtcgtatctaccccggagcctcccaaacctccacctcaggaacagtgg
gctgtgcctgtggacgtcacctcccctgtgggcgacttttaccgtctcatccctcagcca
gctttccagtgggcatttgagccagatgtgtttcagaagcaggccatcctgcacttggag
cagcacgactctgtctttgttgcagctcacacatctgctgggaagacagtggtggctgaa
tatgccatcgccctggcccagaaacacatgactcgtaccatctacacttctcctatcaaa
gccctgagcaaccagaagtttcgggacttccggaacacatttggggatgtagggctgctc
acaggggatgtgcagctgcacccagaggcctcctgcctcatcatgaccacggagatcctt
cgctccatgctgtacagtggctccgacgtcatccgagacctggagtgggtcatctttgat
gaagtccactatatcaatgatgctgagcgtggggtcgtgtgggaggaggtgctcatcatg
cttcctgagcacgtctccatcatccttctgagtgccaccgtccccaatgccctggagttt
gctgactggatcgggcggctgaagcggaggcagatctatgtgatcagcacggttgcccgg
ccggtccccctggagcactatctcttcacagggaacagccccaagacgcagggcgagctc
ttcctgctgctggactcccgaggggccttccacacccaggggtactatgctgcagtggag
gccaagaaagagaggatgagcaagcacgcccagactttcggggccaagcagcccacgcac
cagggtgggcctgcacaggaccgcggggtgtacctgtccctgctggcttccctccggacc
cgggctcagttgccagtggtagtgttcaccttctcccgaggccgctgtgatgagcaggct
tcgggcctcacctctctagacctcacgacaagctcggagaagagtgagatccacctcttc
ctgcagcgctgccttgcacggctccgaggctctgaccgacagctaccccaggtcctgcac
atgtcggagctccttcgccgaggcctaggtgtgcaccacagcggcatcctgcccatcctt
aaggagattgtggaaatgcttttcagcaggggcctggtcaaggtcttgtttgccaccgag
acttttgccatgggggtaaacatgccagccaggacggtggtgtttgactccatgcgcaaa
catgatggctctaccttccgggacctgctgcctggggagtacgtgcagatggcaggccgg
gcaggccggaggggcctggaccccacgggcaccgtcatccttctctgtaagggccgagtg
cctgagatggcagatctacaccgcatgatgatggggaaaccatcccaacttcagtcccag
ttccgcctcacatataccatgatcctcaacctgctgcgggtggatgccctcagagtggag
gacatgatgaagaggagcttctcagagttcccatcccgcaaggacagcaaggcccatgag
caggctctggctgacctcaccaagaggctgggggctttggaggagcctgatgtgactggt
cagttggctgacctacctgagtattacagctgggcggaggagctgacagagacccagaac
atgatccagcgacgcatcatggagtctgtgaatgggctgaaatctctctcagtgggaagg
gtggtagttgtgaagaatgaggaacatcacaatgcactgggtgtgatcctgcaggtctcc
tcaaactccaccagcagggtatttacaacattggtcttgtgtgataagcctgttgtgtct
gataacccaagggacaaggggccagccactccagatgtgccccacccagatgaccttata
ggcttcaagctgttcctgcctgaagggccctgtgagcacaccgtggccaagctccagcca
ggagatgtggctgccatctctaccaaagtgctccgggtgaatggggagaagatctctgag
gactttagcaagaggcagcaaccaaaattcagaaaggaccctccccttgcggctgtgacc
actgctgttcaggagctgctgcgtctggctcagtcctatccagcaggacccccaaccctt
gaccctatcaacgacctgcaactcaaggatgtggcagtggtagaaggtgggctccgggcc
cggaagctggaggagctgatccgcggggctcagtgtgtgcacagcccccggtttcctgcc
cagtacgtgaagctgcgggagcgaatgcagattcagaaggaaatggagaggctgcgcttc
ctcctgtctgaccagtcgctgttactgctccctgagtaccaccagcgtgtagaggtgctc
cggactctgggctatgtggatgaggctggcacagtgaagctggcaggccgagtggcctgt
gccatgagcagccatgagctgctcctcactgaactcatgtttgacaatgcactgagcgct
ctgcgaccagaggaaatcgcagctctgctctctggcctggtgtgccagagccccggggac
cctggcgaccagctcccaagtaccctcaaacagggggtagaacgagtcaaagctgtggcc
aagcggattggcgaggttcaggtggcctgtggcctgaaccagacagtggaggagtttgtg
ggagagctgaattttgggctggtagaggttgtgtatgagtgggctaggggtatgcccttc
tccgagttggcagggctctcagggacccctgagggcttggtcgtccgctgcatccagcgt
ctggctgagatgtgtcgctcgcttcgaggagcagcacgtttggtgggtgagcctgtgctg
ggtgccaagatggagacggcagccaccttgttacggcgggacatcgtcttcgcagccagc
ctctacacccagtaa
DBGET
integrated database retrieval system
