Mus musculus (house mouse): 108686
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Entry
108686 CDS
T01002
Symbol
Ccdc88a, A430106J12Rik, Ape, C130096N06Rik, C330012F17Rik, D130005J21Rik, Girdin, Giv, Grdn, Hkrp1
Name
(RefSeq) coiled coil domain containing 88A
KO
K25392
girdin
Organism
mmu
Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
mmu03037
]
108686 (Ccdc88a)
Cilium and associated proteins [BR:
mmu03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
108686 (Ccdc88a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HOOK_N
APG6_N
GAS
Motif
Other DBs
NCBI-GeneID:
108686
NCBI-ProteinID:
NP_789811
MGI:
1925177
Ensembl:
ENSMUSG00000032740
UniProt:
Q5SNZ0
LinkDB
All DBs
Position
11:29323521..29460808
Genome browser
AA seq
1845 aa
AA seq
DB search
MENEIFTPLLEQFMTSPLVTWVKTFGPLAAGNGTNLDEYVALVDGVFLNQVMLQINPKSE
SQRVNKKVNNDASLRIHNLSILVKQIKFYYQETLQQLIMMPLPDILIIGKNPFSEQGTEE
VKKLLLLLLGCAVQCQKKEEFIEKIQGLDFDTKAAVAAHIQEVTHNQENVFDLQWMEVTD
MSQEDIEPLLKNMVSHLRRLIDERDEHSETIVELSEERDGVHFLPHASSSAQSPCGSPGM
KRTESRQHLSVELADAKAKIRRLRQELEEKTEQLLDCKQELEQIEVELKRLQQENMNLLS
DARSARMYRDELDALREKAVRVDKLESELSRYKERLHDIEFYKARVEELKEDNQVLLETK
TMLEDQLEGTRARSDKLHELEKENLQLKAKLHDMEMERDMDRKKIEELMEENMTLEMAQK
QSMDESLHLGWELEQISRTSELAEAPQKSLGHEVNELTSSKLLKLEMENQSLTKTVEELR
STADSAAGSTSKILKVEKENQRLNKKVEILENEIIQEKQSLQNCQNLSKDLMKEKAQLEK
TIETLRENSERQIKILEQENEHLNQTVSSLRQRSQISAEARVKDIEKENKILHESIKETC
GKLSKIEFEKRQMKKELELYKEKGERAEELENELNHLGKENELLQKKITNLKITCEKLET
LEQENSELERENRKFKKTLDSFKNLTFQLESLEKENSQLDEENLELRRSVESLKCASMRM
AQLQLENKELESEKEQLRKGLELMRASFKKTERLEVSYQGLDTENQRLQKALENSNKKIQ
QLESELQDLEMENQTLQKSLEELKISSKRLEQLEKENKSLEQETSQLEKDKKQLEKENKR
LRQQAEIKDTTLEENNVKIGNLEKENKTLFKEINVYKESCVRLKELEKENKELVKRATID
IKTLVTLREDLVSEKLKTQQMNNDLEKLTHELEKIGLNKERLLHDEQSTDDSRYKLLESK
LESTLKKSLEIKEEKIAALEARLEESTNYNQQLRHELKTVKKNYEALKQRQDEERMVQSS
IPVSGEDDKWGRESQEATRELLKVKDRLIEVERNNATLQAEKQALKTQLKQLETQNNNLQ
AQILALQRQTVSLQEQNTTLQTQNAKLQVENSTLNSQSTSLMNQNAQLLIQQSSLENENE
SIMKEREDLKSLYDALIKDHEKLELLHERQASEYESLISKHGTLKSAHKNLEVEHKDLED
RYNQLLKQKGQLEDLEKMIKTEQEKMLLESKNHEVVASEYKKLCGENDRLNYTYSQLLKE
TEILQMDHKNLKSVLNNSKLEQTRLEAEFSKLKEQYQQLDITSTKLNNQCELLSQLKGNL
EEENRHLLDQIQTLMLQNRTLLEQNMESKDLFHVEQRQYIDKLNELRRQKEKLEEKIMDQ
YKFYDPSPPRRRGNWITLKMRKLIKSKKDINRERQKSLTLTPTRSDSSEGFLQLPHQDSQ
DSSSVGSNSLEDGQTLGTKKSSTMNDLVQSMVLAGGQWTGSTENLEVPDDISTGKRRKEL
GAMAFSTTAINFSTVNSSAAFRSKQLVNNKDTTSFEDISPQGISDDSSTGSRVHASRPAS
LDSGRTSTSNSNNNASLHEVKAGAVNIQSRPQSHSSGDFSLLHDHETWSSSGSSPIQYLK
RQTRSSPMLQHKISETIESRAHHKMKAGSPGSEVVTLQQFLEESNKLTSIQLKSSSQENL
LDEVMKSLSVSSDFLGKDKPVSCTLARSVSGKTPGDFYDRRTTKPEFLRTGPQKTEDAYT
ISSAGKPTPSTQGKIKLVKETSVSRQSKDSNPYATLPRASSVISTAEGTTRRTSIHDFLS
KDSRLPVSVDSSPPTAGSSSTTASNVNKVQESRNSKSRSREQQSS
NT seq
5538 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgaaatcttcactccccttctggagcagttcatgaccagccccttggtcact
tgggttaaaacgtttggacctctggctgcaggaaatgggactaacctggatgagtatgtg
gctttagtggatggggtattcttgaaccaggtcatgctccaaattaatcctaagtcggag
agtcaacgagtaaataaaaaagtcaacaatgatgcttcccttagaattcacaatctgtcc
attttggtgaaacagataaaattttattatcaggagactttgcagcagttgattatgatg
ccattgccagatatcttaatcattggcaaaaatcccttttctgaacaaggtacagaagaa
gttaaaaagttgcttttgctcttacttggttgtgcagttcagtgtcagaaaaaggaagaa
tttattgaaaaaattcaaggtttagattttgatacgaaagcagcagttgctgcacacatt
caagaggtaactcataatcaagaaaatgtatttgatctgcaatggatggaagtgacagat
atgtctcaggaagacatagaaccactcttaaagaatatggtgtcacatctaagaagactg
atagatgagagagatgaacattcagagactattgtagaactctcagaagagcgagatggt
gttcatttcctaccccatgcctcttcatctgcacagtcaccctgtggttctccaggcatg
aagcgaacagaaagtcgacagcatctctcagtggaattggctgatgctaaagccaagatc
cgaagacttaggcaggaattggaagaaaagactgagcagttactggactgtaaacaagaa
cttgagcaaatagaagtggaattgaagaggctgcaacaagagaacatgaatttgctttcg
gatgctcgatctgctagaatgtaccgagatgaattggatgccctccgagagaaagcagtc
agagttgataagcttgaaagtgaactcagtagatataaagagagactacatgatattgaa
ttttataaggcaagagttgaggaattaaaagaagataatcaagttttattagaaacaaaa
actatgctggaagaccaactagaaggaactcgggctcgttctgacaaactacatgaatta
gaaaaagagaatttacaactaaaggctaaattgcatgatatggagatggaacgagatatg
gatagaaagaagattgaagaattaatggaagaaaatatgactctggaaatggcacagaaa
caaagtatggatgagtcattacaccttggctgggagctggaacagatatccagaactagt
gaacttgctgaagcaccacagaagtccttgggccatgaggtaaatgaattaacatcaagt
aagttattaaagttggaaatggaaaaccagagtctgacgaaaaccgtagaagagctccgg
agcactgcggactccgcagcaggcagcacttccaaaatcctaaaagttgaaaaggaaaac
cagagactgaataaaaaggttgaaattcttgaaaatgaaattattcaagaaaagcaaagt
cttcagaattgtcaaaatttaagcaaggatctaatgaaagagaaagctcagcttgaaaaa
acaatagagacgctcagagagaattcagagaggcagattaaaatattggagcaggaaaat
gaacatctgaatcaaacagtgtcttccttacggcagcgctcccagattagtgctgaggcg
agagtgaaagacattgaaaaagaaaataaaattctccatgaatctatcaaagaaacatgt
ggaaaactaagcaagattgaatttgaaaaaagacaaatgaaaaaggaattagagctttat
aaagagaaaggagagcgagcagaagaacttgaaaacgagttgaatcatcttggaaaggag
aatgaattgttgcagaaaaagataacgaatttaaagattacgtgtgaaaaacttgagaca
ttagaacaggaaaattcagagctagaaagagaaaataggaaatttaaaaaaactttggac
agctttaaaaaccttacttttcagttagaatctctagaaaaagagaattcccaactcgat
gaagaaaacttagaactgcgaaggagcgtggagtctctgaagtgtgcgagcatgagaatg
gcccagctccagctagagaacaaggagctggagagtgagaaggagcagctgaggaagggc
ttggagctcatgagagcctctttcaagaagacagaacgcttggaagttagctaccagggg
ctagacacagaaaatcaaagactacaaaaagctctagaaaatagcaataaaaaaatccaa
cagttagagagtgagctacaagacttagagatggaaaatcaaacattacaaaaaagccta
gaggaactgaaaatatctagcaaaagactggaacaactagaaaaagaaaacaagtcatta
gagcaagagacatctcaacttgaaaaggacaaaaaacaattggagaaggaaaataaacga
ctccgacaacaagcagaaataaaagataccacattagaagaaaataatgtgaaaattggg
aatttggaaaaagaaaacaaaactttattcaaagaaattaatgtatataaagagtcctgt
gttcgtctaaaagaattagaaaaagaaaataaagagcttgtaaaaagagcaactattgat
attaaaaccttggttacattacgtgaggatttagtcagtgagaaattgaagacacaacaa
atgaacaatgatcttgagaaattaactcatgagcttgagaagataggtttaaataaagag
cggctcctacacgatgagcagagcactgatgacagtaggtacaaacttttggaatcaaaa
ttagaatccactcttaagaagtcccttgaaataaaagaagaaaaaattgctgctttagaa
gctcggttagaagaatctacaaattacaatcagcaattgcgccacgaacttaaaacagtg
aaaaaaaattatgaagctctcaaacagagacaagatgaagaaaggatggtacagagttcc
attccagtctctggagaagatgacaagtggggccgagaaagtcaagaagcgactagagag
ctcctgaaagttaaagacaggttaattgaagtagaaagaaacaatgctacgctgcaagca
gagaagcaagcactgaaaactcaactgaagcaacttgaaacacaaaataataatttgcag
gctcagattcttgcactgcagaggcagaccgtgtcattgcaggagcagaataccacgctt
cagacacagaatgccaagcttcaggttgaaaattctacccttaattcacaaagtacttca
cttatgaaccagaatgcacagcttctaatccagcagtcttccttagaaaatgaaaatgaa
tctataatgaaagaacgagaagacttgaaatctctgtatgatgctctgataaaagatcac
gaaaagctggaacttcttcatgagcggcaagcttcagagtatgagtctctgatctctaaa
catggcaccctgaagtctgctcacaaaaatcttgaagtggaacataaagaccttgaagac
cgttacaatcagttattaaaacagaaaggacaattggaagatttggaaaaaatgatcaaa
acggaacaggaaaaaatgctgcttgaaagcaaaaaccatgaagtggtagcttcagagtac
aagaagctttgtggtgaaaatgataggttaaattatacatatagtcagcttttaaaagag
actgaaattttacaaatggatcataaaaatttgaaaagtgttctaaataattctaaattg
gaacaaacaagattagaagctgaattttcaaagctaaaggagcagtatcagcaactagat
atcacatctaccaagctaaataaccagtgtgagttgctcagccaacttaaaggaaattta
gaagaagaaaatcgacatctacttgatcagatccagacactaatgctacagaacagaaca
ctgctggagcaaaatatggaaagcaaggatctctttcatgttgaacaaagacagtacatt
gataaattaaatgaattgagacgacaaaaagaaaaattagaagagaaaattatggatcaa
tacaaattttatgacccatctcctcctagaaggagaggcaactggattactctaaaaatg
agaaaattgataaagtcaaaaaaagatattaatcgggaacgtcagaaatctctaacacta
acacccacccgctcagactccagtgaaggatttcttcagctgccccatcaagacagccaa
gacagctcttcagtaggatcaaactctttagaagatggccaaaccctggggaccaagaag
agcagcaccatgaatgacctggtgcagtccatggtcctagcaggaggacagtggacaggt
agtactgaaaatttggaggtccctgatgatatttcaacgggtaaaaggagaaaagaattg
ggagctatggccttctctactacagccatcaacttttcaactgtcaactcttctgcagcc
ttccgatccaagcagttggttaataataaagatactacatcctttgaagacataagtcca
caaggtattagtgatgattctagtacgggatcaagagttcatgcttcaagaccagccagc
cttgatagtggcagaacatccactagcaatagcaataataatgcttcactccatgaagtc
aaagcaggtgcagttaatatccaaagcaggccacaaagccacagcagtggagatttcagt
ctgcttcatgatcatgagacttggtctagcagtggtagcagtccaattcagtatttgaaa
agacagaccaggtcaagccctatgctccagcacaaaatatctgaaacaatagagagtcga
gcccatcacaagatgaaagctggctccccaggaagtgaagttgttactctacaacagttt
ttggaagaaagcaacaagcttacctcaatacagttgaagtcctcgagtcaagagaatctt
ttagatgaagtaatgaaaagtttgtctgtgtcttccgactttctggggaaagacaagcca
gttagctgtaccctggccaggtcagtaagtggaaagactccaggggacttctatgataga
cggacaactaagcctgaatttttgagaactggtcctcaaaagactgaagatgcctacacc
atcagctctgcagggaaacctacaccaagcactcaaggaaagataaaactagtaaaagaa
acctctgtgtcaagacaatcaaaagatagcaatccttatgccactttacctcgtgcaagc
agtgtgatctctactgctgaaggaacaactcgaaggacgagcatccatgattttttgagc
aaagacagtagactgcccgtgtcagtcgattcatcaccacctactgctggtagcagcagc
actacagcatctaatgtgaacaaagtacaagagagcagaaattcaaaaagcaggtctagg
gagcaacaaagctcctaa
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integrated database retrieval system
