Mus musculus (house mouse): 12265
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Entry
12265 CDS
T01002
Symbol
Ciita, C2ta, EG669998, Gm9475, Mhc2ta
Name
(RefSeq) class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu04612
Antigen processing and presentation
mmu05145
Toxoplasmosis
mmu05152
Tuberculosis
mmu05164
Influenza A
mmu05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
12265 (Ciita)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
12265 (Ciita)
09171 Infectious disease: bacterial
05152 Tuberculosis
12265 (Ciita)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
12265 (Ciita)
09163 Immune disease
05340 Primary immunodeficiency
12265 (Ciita)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
mmu01001
]
12265 (Ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
mmu04054
]
12265 (Ciita)
Enzymes [BR:
mmu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
12265 (Ciita)
Protein kinases [BR:
mmu01001
]
Serine/threonine kinases: Other
TAF1 family
12265 (Ciita)
Pattern recognition receptors [BR:
mmu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
12265 (Ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_14
LRR_8
LRR_9
Motif
Other DBs
NCBI-GeneID:
12265
NCBI-ProteinID:
NP_001289547
MGI:
108445
Ensembl:
ENSMUSG00000022504
UniProt:
P79621
Q3UNW8
Q3KNE0
Q3U5G4
Q3UU40
LinkDB
All DBs
Position
16:10297877..10348928
Genome browser
AA seq
1155 aa
AA seq
DB search
MNHFQAILAQVQTLLSSQKPRQVRALLDGLLEEELLSREYHCALLHEPDGDALARKISLT
LLEKGDLDLTFLSWVCNSLQAPTVERGTSYRDHGDHSLCATMDLGSPEGSYLELLNSDAD
PLHLYHLYDQMDLAGEEEIELSSEPDTDTINCDQFSKLLQDMELDEETREAYANIAELDQ
YVFQDTQLEGLSKDLFIEHIGAEEGFGENIEIPVEAGQKPQKRRFPEEHAMDSKHRKLVP
TSRTSLNYLDLPTGHIQIFTTLPQGLWQISGAGTGLSSVLIYHGEMPQVNQVLPSSSLSI
PSLPESPDRPGSTSPFTPSAADLPSMPEPALTSRVNETEDTSPSPCQEGPESSIKLPKWP
EAVERFQHSLQDKYKALPQSPRGPLVAVELVRARLERGSNKSQERELATPDWTERQLAHG
GLAEVLQVVSDCRRPGETQVVAVLGKAGQGKSHWARTVSHTWACGQLLQYDFVFYVPCHC
LDRPGDTYHLRDLLCPPSLQPLAMDDEVLDYIVRQPDRVLLILDAFEELEAQDGLLHGPC
GSLSPEPCSLRGLLAGIFQRKLLRGCTLLLTARPRGRLAQSLSKADAIFEVPSFSTKQAK
TYMRHYFENSGTAGNQDKALGLLEGQPLLCSYSHSPVVCRAVCQLSKALLEQGTEAQLPC
TLTGLYVSLLGPAAQNSPPGALVELAKLAWELGRRHQSTLQETRFSSVEVKTWAVTQGLM
QQTLETTEAQLAFSSFLLQCFLGAVWLAQCNEIKDKELPQYLALTPRKKRPYDNWLEGVP
RFLAGLVFQPRAHCLGALVEPAVAAVADRKQKVLTRYLKRLKLGTLRAGRLLELLHCAHE
TQQPGIWEHVAHQLPGHLSFLGTRLTPPDVYVLGRALETASQDFSLDLRQTGVEPSGLGN
LVGLSCVTSFRASLSDTMALWESLQQQGEAQLLQAAEEKFTIEPFKAKSPKDVEDLDRLV
QTQRLRNPSEDAAKDLPAIRDLKKLEFALGPILGPQAFPTLAKILPAFSSLQHLDLDSLS
ENKIGDKGVSKLSATFPQLKALETLNLSQNNITDVGACKLAEALPALAKSLLRLSLYNNC
ICDKGAKSLAQVLPDMVSLRVMDVQFNKFTAAGAQQLASSLQKCPQVETLAMWTPTIPFG
VQEHLQQLDARISLR
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacttccaggccatcctggcccaagtacagacactgctctccagccagaagccc
aggcaggtgcgggccctcctggatggcctgctggaagaagagctgctctcacgggaatac
cactgtgccttgctgcatgagcctgatggtgatgccctggcccggaagatttccctgacc
ctgctggagaaaggggacttagacttgactttcttgagctgggtctgcaacagtctgcag
gctcccacggtagagaggggcaccagctacagggaccatggagaccatagtctgtgtgcc
accatggatctgggatctccagagggcagctacctggaactccttaacagtgatgccgac
cccctacatctctaccacctctatgaccagatggacctggctggggaggaggagatcgaa
ctcagctcagagccagacacagataccatcaactgcgaccagttcagcaagctgttgcag
gacatggaactggatgaagagacccgggaggcctatgccaacattgcggaactggatcag
tacgtgttccaggatacccagctcgagggcctgagcaaggacctcttcatagagcacatt
ggagcagaggaaggctttggtgagaacatagagatccctgtagaagcaggacagaagcct
cagaagagacgcttcccggaagagcatgctatggactcaaagcacaggaagctagtgccc
acctctaggacctcactgaactatttggatctccccactgggcacatccagatcttcacc
actctgccccagggactctggcaaatctcaggggctggcacaggtctctccagtgtccta
atctaccacggtgagatgccccaggtcaaccaagtgctcccttcaagcagcctcagtatc
cccagtctccccgagtccccagaccggcctggctccaccagccccttcacaccatctgca
gctgacctgcccagcatgcccgaacctgcgctgacctcccgtgtaaatgagacagaggac
acatctccctccccatgccaagagggtcccgagtcttccatcaagcttccaaaatggcca
gaggctgtggagcgattccagcactccctacaggacaaatacaaggcattgccccagagc
ccaaggggtcctctggtggccgtggagctggtacgggccaggctggaaagaggcagcaac
aagagccaggaaagggagctggccactcccgactggacagagcgccagctagcccacggt
ggtctggcagaggtacttcaggttgtcagtgactgcaggcgaccaggagagacacaggtg
gtcgctgtgctgggcaaggctggccagggaaagagccactgggccaggacagtgagtcac
acctgggcatgtggccagttgctacaatatgactttgtcttctatgtcccctgtcattgc
ttggatcgtcccggggacacctaccacctgcgggatctgctctgtcccccgagcctgcag
ccactggccatggatgacgaggtccttgattatatcgtgaggcagccagaccgtgttctg
ctcatcctagatgctttcgaggagctagaggcccaagatggcctcctgcacggaccctgt
ggatctctgtccccagagccctgctccctccgaggactgctggctgggatcttccagcgg
aagctactgcgaggctgcacactgctcctcacagcccggccccggggccgcctggctcag
agcctgagcaaggcagatgccatctttgaggtgcccagcttctctaccaagcaggccaag
acttacatgaggcactactttgagaactcagggacagcggggaaccaagacaaggccctg
ggcctcctggagggccagcctcttctctgcagctatagtcacagccctgttgtgtgcagg
gctgtgtgccagctctccaaggccctgctagaacagggcacagaggcccagctaccttgt
acacttacaggactctatgtcagcctgctaggtcctgcagctcagaacagtcctcccgga
gccttagtcgagctggccaagctggcctgggagctgggacgaagacaccaaagcaccttg
caagaaacccggttttcatccgtggaggtgaaaacctgggcagtgacccaaggcttgatg
cagcagaccctggagaccacggaggctcaactggccttctccagttttctgctacagtgt
ttcctgggtgctgtgtggctggcacagtgcaatgaaatcaaagacaaggagctgccacag
tacctggccttgactccgaggaagaagagaccctatgacaactggctggagggtgtacca
cgctttctggctggattagttttccagcctcgagcccactgcctgggagctctggtggag
cctgcagtggctgcagtggcggataggaaacagaaggttcttaccaggtacctgaagcgc
ctgaagctggggacactccgggcagggaggctgctggagctgctccactgtgcccacgag
acacagcaacctgggatatgggagcatgttgcacaccagctccctggccacctctccttc
ctgggcacccggctcacacccccagatgtgtatgtgctgggcagggccttggagacagcc
agccaggacttctccttggaccttcgtcagactggcgttgagccttctggactgggaaac
ctcgtgggactcagctgtgtcaccagtttcagggcctccttgagtgatacaatggcatta
tgggagtcccttcagcagcagggagaagcccagctactccaggcggcagaggagaagttc
accattgagccatttaaagccaaatccccaaaggatgtggaagacctggatcgtctcgtg
cagacccagaggctgagaaacccctcagaagatgcagccaaggatcttcctgccatccgg
gaccttaagaagctagagtttgcgttgggccccatcttgggcccccaggctttccccaca
ctggcaaagatccttccagccttctcttctctgcaacacctggacctggactcacttagt
gagaacaagatcggagacaagggtgtgtcgaagctctcagccaccttccctcagctgaag
gccctggagacgctcaacttgtcccaaaacaacatcactgatgtgggtgcctgcaagctt
gcagaagctctgccagccctagccaagtccctcctaaggctgagcttgtacaataactgc
atctgtgacaaaggagccaagagcctggcacaagtacttccggacatggtgtccctgcgt
gtgatggatgtccagttcaacaagttcacggctgccggtgcccagcaactggcctccagc
cttcagaagtgccctcaggtggaaacactggcaatgtggacacccactatcccctttggg
gttcaggaacacctgcagcagctggatgccaggatcagtctgagatga
DBGET
integrated database retrieval system
