Mus musculus (house mouse): 12814 Help Entry 12814             CDS       T01002                                  Symbol Col11a1, C530001D20Rik, cho Name (RefSeq) collagen, type XI, alpha 1   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism mmu  Mus musculus (house mouse) Pathway mmu04820   Cytoskeleton in muscle cells mmu04974   Protein digestion and absorption Brite KEGG Orthology (KO) [BR:mmu00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     12814 (Col11a1)  09150 Organismal Systems   09154 Digestive system    04974 Protein digestion and absorption     12814 (Col11a1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:mmu00536]     12814 (Col11a1) Glycosaminoglycan binding proteins [BR:mmu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    12814 (Col11a1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1 Motif Other DBs NCBI-GeneID:  12814 NCBI-ProteinID:  NP_031755 MGI:  88446 Ensembl:  ENSMUSG00000027966 UniProt:  Q61245 Q3UST0 LinkDB All DBs Position 3:113823933..114014405 Genome browser AA seq 1804 aa AA seqDB search MEPWSRWKTKRWIWDLTISTLALTFLFQAREVRGAAPVDILKALDFHNSPVGISKTTGFC TNRKNSKDPDVAYRVTEEAQISAPTKQLFPGGIFPQDFSILFTIKPKKGTQAFLLSLYNE HGIQQLGVEVGRSPVFLFEDHTGKPTPENYPLFSTVNIADGKWHRVAISVEKKTVTMIVD CKKKITKPLDRSERSIVDTNGIMVFGTRILETDVFQGDIQQFLITGDPKAAYDYCDHYSP DCDLTSKAAQAQEPHIDEYAPEDIIEYDYEYGETDYKEAESVTEMPTFTEETVAQTEANI VDDFQDYNYGTMEPYQTETPRRVSGSNEPNPVEEGFTEEYLTGEDYDVQRNTSEDILYGN KGVDGRDSDLLVDGDLGEYDFYEYKEYEERTTTSPNEEFGPGVPAETDFTETSINGHGAY GEKGQKGEPAVVEPGMLVEGPPGPAGPAGLMGPPGLQGPSGLPGDPGDRGPPGRPGLPGA DGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGP VGGPGSAGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGESGSKGDRGF DGLPGLPGDKGHRGERGPQGPPGLPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGP PGQPGIGGIDGPQGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGL AGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGE DGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGL PGYPGRQGPKGSTGFPGFPGANGEKGARGIAGKPGPRGQRGPTGPRGSRGARGPTGKPGP KGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPAGKDGLPGHPGQRGETGFQGKTGP PGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGP AGIRGFPGERGLPGAQGAPGLKGGEGPQGPQGPVGSPGERGSAGTAGPIGLPGRPGPQGP PGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQKGSKGD KGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGLPGPIGLQGL PGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGVVGDKGEPGEAGN PGPPGEAGSGGLKGERGEKGEAGPPGAAGPAGIKGPPGDDGPKGNPGPVGFPGDPGPPGE PGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGASGSEGRQGEKGAKGE AGAEGPPGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPLGPPGLPGL KGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPIGPPGP PGLPGPAGPKGNKGSSGPTGQKGDSGMPGPPGPPGPPGEVIQPLPILSPKKTRRHTESIQ GDAGDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPDFPDGEY WIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKEKPGSWYSEFKRGKLLS YLDVEGNSINMVQMTFLKLLTASARQNFTYNCHQSAAWYDVLSGSYDKALRFLGSNDEEM SYENNPHIKALYDGCASRKGYEKTVIEINTPKIDQVPIIDVMINDFGDQNQKFGFEVGPA CFLG NT seq 5415 nt NT seq  +upstreamnt  +downstreamnt atggagccctggtccaggtggaaaacgaaacggtggatctgggatctcaccatctcaacc ctcgccttgacttttctcttccaagctagagaggtcagaggagctgctccagttgatata ctaaaagcattagattttcacaattctccagtgggaatatctaaaacaacaggattttgc acaaacagaaagaattctaaagatccagatgttgcttatagagttacggaggaagcacaa atcagcgccccaacaaagcagctatttccaggaggaatttttccacaagatttttcaata ctatttacaataaaacccaaaaaaggaactcaagctttcctcttgtccctctacaatgaa catggcattcagcaactcggtgttgaggttgggagatcgcccgtttttctatttgaagac cacactggaaaacccacaccggaaaactatcctctcttctcaacagttaacattgctgat ggcaagtggcaccgggtcgcaatcagtgtggagaagaaaactgtgacaatgattgttgat tgtaagaagaaaatcacaaaacccctcgatagaagtgagagatcgatagtcgataccaat ggaatcatggtatttggaacaagaattttagaaacagatgttttccagggtgatattcag cagttcctgatcacaggagaccccaaggcagcatacgactactgtgaccattacagtcca gattgtgacttaacatccaaggctgcccaggctcaggagcctcacattgatgagtatgca cctgaggatataatcgagtatgactatgaatatggggagacagactataaagaggctgag agtgtaacagagatgcctacttttactgaagaaacagtagcacaaacagaggcaaatatt gtggatgattttcaagactacaactatggaacaatggaaccttaccagactgagactcct aggcgggtatcaggatcgaatgagccaaatccagttgaagaaggttttactgaagaatat ctaaccggagaggattatgatgtccagagaaacacttccgaggatattctgtacgggaac aaaggagtagacggcagggattctgatctcctggtagatggagatttaggtgaatatgat ttttatgaatacaaagaatatgaagaaaggactacgacctcccctaatgaagaatttggc ccaggtgtcccagcagaaactgatttcacagaaacaagcataaatggacatggtgcatat ggagagaaagggcagaagggggaaccggctgtggttgaacccgggatgcttgttgaagga ccacctgggccagcaggaccagcgggtcttatgggtcctccagggctacaaggtccttct gggcttcccggcgaccctggggataggggcccaccaggacgtcctggcttaccaggggct gatggtttacctggacctcctggaaccatgctgatgttaccattccgctatgggggtgac ggctccaaaggaccaacaatctctgcacaggaagcccaagctcaggcgattcttcagcag gctcggattgctctgagaggccctcctggcccaatgggtcttactggaagaccaggtcct gtggggggtcctggttcagctggagccaaaggtgagagtggggatccaggtcctcagggt cctcgaggtgtccaaggtcctcctggtccaacgggaaagcctggaaagaggggccgtcca ggtgctgatggaggaagaggcatgccaggagaatctgggtctaagggagaccgagggttt gatggacttccaggtctgcctggtgacaaaggtcacaggggagaaagaggtccacaaggt ccacctggcctccctggcgatgatggaatgaggggagaagatggggagatcgggcccagg ggtcttccaggtgaagctggtccaagaggcttgctgggaccaaggggaactccaggaccc cctgggcagcctggtatcggaggtatagatggcccccaaggaccaaaaggaaacatgggt ccccaaggggagcctggaccaccaggtcagcaaggaaatccaggacctcaaggacttcct ggtccacaaggcccaattggccctccaggagaaaaagggccacaaggaaaaccagggctt gcgggacttcctggtgctgatggacctcctggtcatcctgggaaagaaggccagtctgga gaaaagggtgccctgggtcctcctggtcctcaggggcctattggttatcctggtccccgt ggagtaaagggagcagatggtgtcagaggtctcaagggctctaaaggcgaaaagggtgaa gatggctttccaggattcaaaggtgacatgggtcttaaaggtgacagaggcgaggtgggt caagttggcccaagaggagaagatggccctgaaggccccaaaggccgtgcaggcccaact ggagacccaggtccctctggccaagcaggagagaagggaaaacttggggttccaggattg ccgggatatccaggaagacaaggtccaaagggatccactggatttcctggatttccaggt gccaacggggagaaaggtgcccggggaattgctggcaaaccaggcccccggggacagcgt ggtccaacgggtcctcgaggttccagaggcgccagaggtcccacgggaaaacctggtccg aagggtacttcaggtggtgatggccctcctggtcctccaggcgaaaggggccctcaagga cctcaaggtccagttggattccctggaccaaaaggcccccctggccctgctgggaaagat gggctaccaggacaccctgggcagcgtggtgagactggatttcaaggcaagacaggtccc cctggaccaggaggtgtggtaggaccacagggaccaactggtgagactggtcctataggt gaacgtggccatcccggccctcctggtcctcctggcgagcaaggacttcccggtgctgca gggaaagaaggtgcaaagggtgatcccgggcctcaaggtatctcaggaaaagatggacca gcaggaatacgcggtttcccaggtgaaagaggccttcctggagcccagggtgcacctggg ctgaaaggaggagaaggtccccagggcccacagggtccagttggctctcctggagagcga ggctcagcaggcacagcaggcccaattggtttgccaggacgtccaggcccccagggtcct cctggtccagctggagaaaaaggtgctcctggagaaaagggtccccagggtcctgcaggt agagatggtgtccaaggccctgtgggtctcccaggacctgctggtcctgctggctctcct ggagaagatggagacaagggtgaaattggtgaaccaggccaaaagggcagcaaaggtgac aaaggcgaaaatggtcctcctggtccccccggacttcaaggacctgttggtgctcctgga atcgctggaggcgatggtgagccaggtccccgaggacagcagggaatgtttggacaaaaa ggtgatgagggcgcacgaggtttcccaggacttcctggccccataggtcttcaggggttg ccaggcccaccaggtgaaaagggcgaaaatggagacgttggccccatgggtccaccaggt cctcctggcccacgaggccctcaaggtcccaatggagctgatggaccacaaggaccccca ggctccattggttcagttggtgttgtgggagacaagggtgaacctggagaagcagggaac ccagggccccctggggaagctggctctggtggtctcaaaggagagagaggagagaaagga gaagctgggccccctggtgctgcaggtcctgctggtattaaggggccaccaggtgatgat gggcccaaggggaacccgggacccgttgggtttcctggagatcctggtccacctggagaa cctggtcctgcagggcaagatggtgttggaggtgacaagggtgaagatggagatccagga caaccaggtccccctggtccatctggtgaagctggccctccaggtcctcctgggaagaga ggtccgcctggagcttcaggttcagaaggaaggcaaggagaaaaaggtgctaagggagaa gctggtgctgaaggacctcctgggaaaactggccctgtcggacctcagggaccttctgga aagcctggtccagaaggtcttcgaggcatccctggtcctgtgggagaacaaggtctccca ggtgctgctggccaagatggacctcctggtcctctgggacctcctggtttacctggtctc aaaggtgaccctggatccaagggtgaaaagggacatcctggtttaattggattgattggt cctccaggagaacaaggggaaaaaggtgacagaggacttcctgggactcaaggttctcca ggagccaaaggcgatgggggcatcccaggtcctgctggtcccataggtccccctggtcct ccaggattaccaggtcccgctggcccgaagggtaacaaaggatcatctggacctactggc cagaagggtgacagtggtatgccagggcctcccgggcctccaggtcctcctggagaagtg atacagcctttgcctattttgtcaccaaaaaagaccagaagacacactgaaagcatccag ggtgatgcaggagataatattcttgactactcagatggcatggaggagatatttggttcc ctcaattctctgaaacaagacattgaacacatgaagtttcccatgggcacacagaccaac ccagcacgaacatgcaaagacctgcaactcagccatcccgacttcccagatggtgaatat tggattgatcctaaccaaggttgttcaggtgattccttcaaagtttactgtaatttcaca gctggtggtgagacatgcatctatccggataaaaaatctgagggagtaagaatttcatcg tggccaaaggagaaaccaggaagttggtacagtgaatttaagagaggaaaactgctttca tatttagatgtggaaggcaattccataaatatggtacaaatgacattcctgaagctcctg actgcctctgcccggcaaaacttcacctacaattgccatcagtcagctgcctggtatgac gtattatcaggaagttatgacaaagcacttcgatttctgggatcaaatgatgaggaaatg tcctatgagaacaacccacacatcaaagctttgtatgatggctgtgcgtctcgaaaaggc tatgaaaagacagtgattgagatcaatactccgaaaattgatcaggtacccatcattgat gtaatgatcaatgattttggtgatcagaaccagaagtttggatttgaagtcggtccagct tgctttcttggataa

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