Mus musculus (house mouse): 12817
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Entry
12817 CDS
T01002
Symbol
Col13a1
Name
(RefSeq) collagen, type XIII, alpha 1
KO
K16617
collagen type XIII alpha
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
12817 (Col13a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mmu00536
]
12817 (Col13a1)
Glycosaminoglycan binding proteins [BR:
mmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
12817 (Col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
12817
NCBI-ProteinID:
NP_031757
MGI:
1277201
Ensembl:
ENSMUSG00000058806
UniProt:
Q9R1N9
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All DBs
Position
10:complement(61674013..61814985)
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AA seq
739 aa
AA seq
DB search
MVAERTRKAAASGSRGPGELGAPGPGTVALAEQCARLPSPGCCGLLALALCSLALSLLAH
FRTAELQARVLRLEAERGEQQMEKAILGRVNQLLDEKWKFYSRRRREAPKMSPGCNCPPG
PPGPTGRPGLPGDKGAIGMPGRVGIKGQPGEKGAPGDAGMSIVGPRGPPGQPGTRGFPGF
PGPIGLDGRPGHPGPKGEMGLVGPRGQPGPQGQKGEKGQCGEYPHREYPGGMLAALRSNP
IMSLKLLPLLNSVRLAPPPVIKRRTFQGEQSQTGIQGPPGPPGPPGPSGPLGHPGLPGPI
GPPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGVPGIAVAGMKGEPGTPGTKG
EKGAAGSPGLLGQKGEKGDAGNAIGGGRGEPGPPGLPGPPGPKGEAGVDGQAGPPGQQGD
KGQPGAAGEQGPSGPKGAKGEPGKGEMVDYNGSINEALQEIRTLALMGPPGLPGQTGPPG
PPGTPGQRGEIGLPGPPGHDGDKGPRGKPGDMGPAGPQGPPGKDGPPGMKGEVGPPGSPG
EKGETGQAGPQGLDGPTGEKGEPGDEGRPGATGLPGPIGLPGFTGEKGEAGEKGDPGAEV
PGPPGPEGPPGPPGLQGFPGPKGEAGLEGSKGEKGSQGEKGDRGPLGLPGTPGPIGVPGP
AGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGL
DAPCPLGEDGLPVQGCWNK
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggtggcggagcgcacccgcaaagcggcagcctctggcagccgcggccctggggagctg
ggcgctccggggcccgggacagtggcgctggctgagcagtgcgctaggctgccgagcccc
gggtgctgcggactgctggctctagcgctgtgttcgctggcgctcagcctgctcgcccac
tttcggaccgcggagctgcaggcccgggtgctgcgcttggaagcagagcgcggggagcag
cagatggagaaagctattttgggacgagtcaaccaactgctggacgagaaatggaagttc
tactcgcgtaggcgccgggaagccccgaagatgtctccaggatgtaactgcccaccagga
cctcctggtcccactggaagacctggactcccaggggacaagggtgccatcgggatgcct
ggacgtgtgggtatcaaaggtcaaccaggcgagaagggtgcccctggagatgcggggatg
tccatcgtcgggcctcgaggcccccctggccagcctggtacccgaggtttccctggattc
ccgggtcccattggtcttgacggcaggccgggccaccccggacctaaaggggagatgggc
ctggtgggtcctcgaggacaaccgggacctcagggacaaaagggagaaaagggtcagtgt
ggagagtacccacacagggagtacccaggcggcatgctagcagctctgcgctccaacccg
ataatgtccctaaagctgttgcctctactcaattcagtgcggctggctccacccccagtc
attaaaaggcggacctttcagggggaacaaagtcagactggcatccaaggccctccaggg
ccaccgggccccccaggaccaagtggccctctgggacacccaggactgccagggcctata
gggccacctggtttaccggggcctcctggaccaaagggagacccagggatccagggctat
catggccgcaagggagagcggggcatgccaggaatgccaggcaagcacggagccaagggg
gttcctgggattgccgtggctgggatgaagggtgagccagggacgccaggaaccaagggt
gagaagggtgcagcaggctcccctggcctcctggggcagaagggagaaaaaggtgatgct
ggcaatgccatcggaggaggcaggggggagcctggccccccggggctccctgggccccct
gggccaaagggagaagctggtgttgatggccaggctgggcccccaggacagcaaggagac
aaggggcagccaggagcagctggtgaacagggaccctctggccccaagggtgccaagggt
gaacccggcaaaggagagatggtggattataatggcagcatcaacgaggcgcttcaggag
atcaggacgctggccttgatggggcctcctggtcttcctggacaaacaggcccacccgga
cctccagggactccaggccaaaggggggagattggactgccaggccctccaggacacgat
ggggacaaggggcctcgaggaaaaccaggagatatggggccggctggtcctcaaggaccc
ccaggaaaggatgggcctccaggaatgaagggagaagtcggacccccaggaagtccaggg
gagaaaggggagacaggacaagcaggcccccagggtctagacggcccaactggggagaaa
ggagaaccaggtgacgaagggaggcctggagcgacaggattgcctgggcccatcgggctc
ccgggattcacaggagagaaaggagaagctggggagaaaggcgacccgggagcagaggtt
cctgggccgccagggccagagggtcctccaggacctccgggcctccaaggttttcctgga
ccaaagggagaagcaggcctagagggcagtaaaggagagaagggctcccagggagaaaaa
ggagaccgggggcctctgggattgcctggtactccaggaccaatcggggttccaggccca
gccggaccaaagggcgaaaggggcagcaaaggcgacccagggatgacgggaccaacggga
gcagctgggctgcctggtttacatggaccacccggggacaaaggaaaccggggggagagg
gggaagaagggctctagagggcctaaaggggacaagggggaccaaggagcacctggacta
gacgccccctgcccgctgggagaagatggcttaccagtccaaggctgctggaacaagtga
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