Mus musculus (house mouse): 12822 Help Entry 12822             CDS       T01002                                  Symbol Col18a1 Name (RefSeq) collagen, type XVIII, alpha 1   KO K06823   collagen type XVIII alpha Organism mmu  Mus musculus (house mouse) Pathway mmu04974   Protein digestion and absorption Brite KEGG Orthology (KO) [BR:mmu00001]  09150 Organismal Systems   09154 Digestive system    04974 Protein digestion and absorption     12822 (Col18a1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:mmu04147]     12822 (Col18a1)    00535 Proteoglycans [BR:mmu00535]     12822 (Col18a1)    00536 Glycosaminoglycan binding proteins [BR:mmu00536]     12822 (Col18a1) Exosome [BR:mmu04147]  Exosomal proteins   Exosomal proteins of other body fluids (saliva and urine)    12822 (Col18a1) Proteoglycans [BR:mmu00535]  Extracellular matrix (ECM) proteoglycans   Basement membrane proteoglycans    12822 (Col18a1) Glycosaminoglycan binding proteins [BR:mmu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    12822 (Col18a1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Endostatin Collagen DUF959 Collagen_trimer Laminin_G_3 Laminin_G_2 Motif Other DBs NCBI-GeneID:  12822 NCBI-ProteinID:  NP_001103461 MGI:  88451 Ensembl:  ENSMUSG00000001435 UniProt:  P39061 Structure PDBPDBj LinkDB All DBs Position 10:complement(76888013..77002351) Genome browser AA seq 1527 aa AA seqDB search MAPDPSRRLCLLLLLLLSCRLVPASADGNSLSPLNPLVWLWPPKTSDSLEGPVSKPQNSS PVQSTENPTTHVVPQDGLTEQQTTPASSELPPEEEEEEDQKAGQGGSPATPAVPIPLVAP AASPDMKEENVAGVGAKILNVAQGIRSFVQLWDEDSTIGHSAGTEVPDSSIPTVLPSPAE LSSAPQGSKTTLWLSSAIPSSPDAQTTEAGTLAVPTQLPPFQSNLQAPLGRPSAPPDFPE NVAEEVGLLQLLGDPLPEKISQIDDPHVGPAYIFGPDSNSGQVAQYHFPKLFFRDFSLLF HVRPATEAAGVLFAITDAAQVVVSLGVKLSEVRDGQQNISLLYTEPGASQTQTGASFRLP AFVGQWTHFALSVDGGSVALYVDCEEFQRVPFARASQGLELERGAGLFVGQAGTADPDKF QGMISELKVRKTPRVSPVHCLDEEDDDEDRASGDFGSGFEESSKSHKEDTSLLPGLPQPP PVTSPPLAGGSTTEDPRTEETEEDAAVDSIGAETLPGTGSSGAWDEAIQNPGRGLIKGGM KGQKGEPGAQGPPGPAGPQGPAGPVVQSPNSQPVPGAQGPPGPQGPPGKDGTPGRDGEPG DPGEDGRPGDTGPQGFPGTPGDVGPKGEKGDPGIGPRGPPGPPGPPGPSFRQDKLTFIDM EGSGFSGDIESLRGPRGFPGPPGPPGVPGLPGEPGRFGINGSYAPGPAGLPGVPGKEGPP GFPGPPGPPGPPGKEGPPGVAGQKGSVGDVGIPGPKGSKGDLGPIGMPGKSGLAGSPGPV GPPGPPGPPGPPGPGFAAGFDDMEGSGIPLWTTARSSDGLQGPPGSPGLKGDPGVAGLPG AKGEVGADGAQGIPGPPGREGAAGSPGPKGEKGMPGEKGNPGKDGVGRPGLPGPPGPPGP VIYVSSEDKAIVSTPGPEGKPGYAGFPGPAGPKGDLGSKGEQGLPGPKGEKGEPGTIFSP DGRALGHPQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGTNGLKGEKGEPGDASL GFSMRGLPGPPGPPGPPGPPGMPIYDSNAFVESGRPGLPGQQGVQGPSGPKGDKGEVGPP GPPGQFPIDLFHLEAEMKGDKGDRGDAGQKGERGEPGAPGGGFFSSSVPGPPGPPGYPGI PGPKGESIRGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTVSVPGPPGPP GPPGPPGAMGASAGQVRIWATYQTMLDKIREVPEGWLIFVAEREELYVRVRNGFRKVLLE ARTALPRGTGNEVAALQPPLVQLHEGSPYTRREYSYSTARPWRADDILANPPRLPDRQPY PGVPHHHSSYVHLPPARPTLSLAHTHQDFQPVLHLVALNTPLSGGMRGIRGADFQCFQQA RAVGLSGTFRAFLSSRLQDLYSIVRRADRGSVPIVNLKDEVLSPSWDSLFSGSQGQLQPG ARIFSFDGRDVLRHPAWPQKSVWHGSDPSGRRLMESYCETWRTETTGATGQASSLLSGRL LEQKAASCHNSYIVLCIENSFMTSFSK NT seq 4584 nt NT seq  +upstreamnt  +downstreamnt atggctcccgaccccagcagacgcctctgcctgctgctgctgttgctgctctcctgccgc cttgtgcctgccagcgctgatgggaattccctgagtcccctgaatcccctggtgtggctc tggccgcccaagacctctgattctttggaaggcccggtctcgaaaccccagaacagttca cctgtgcagtccacagagaaccccaccacgcacgtggtcccccaggatggcctcacagaa caacagacgactcctgccagctccgagctgcccccggaggaagaggaggaggaggatcag aaagctggccagggtggcagccctgcaacccctgctgtccccattcccctggtggcccct gctgcgagcccagacatgaaggaggagaatgttgcgggcgttggagccaagattctgaat gtggctcagggcattcggagcttcgtccagctgtgggatgaggactcgactattgggcac tctgctgggactgaggttccagattcttcaatccctacagtcctcccctctcctgccgag ctctccagtgctccccaggggagtaagaccactctctggctaagcagtgccattccaagt tctccagatgctcagacaactgaggctggcacgctggctgtgcccacccagctgcctccc ttccagagcaacctccaggcaccactgggaagaccctcagccccaccagacttcccagag aatgttgctgaggaggtggggctgctgcagctccttggagaccccctacctgagaagatc tcacaaatcgatgaccctcacgtcgggccggcctacatctttggaccagactccaacagt ggccaggtggcccagtatcatttcccaaaactcttcttccgggacttttcgctgctgttt catgtccggccagccacagaggcagcaggggtgctatttgccatcacagatgctgcccag gtggtagtctcactgggcgtgaagctctcagaggtccgagatggacagcaaaacatctca ttgctctacacggagcctggggccagccagacccagacgggagccagcttccgcctacct gcatttgttgggcagtggacacacttcgcgctcagcgtcgacggaggctctgtggctctc tacgtagactgtgaagaattccagagggtgccatttgctcgggcctcgcagggactggag ctagagcgtggcgctggcctctttgtgggtcaggctggaacagcagaccctgacaagttc caggggatgatctcagagctgaaggtacgcaaaaccccccgggtgagccctgtgcactgt ctggatgaagaagatgatgatgaagaccgggcatctggagattttggaagtggctttgaa gaaagcagcaagtcacacaaggaggatacatctctactacctgggctccctcagccacct cctgtcacttccccacccctggctggaggcagcaccacagaagatcctagaacagaagaa acggaggaagacgccgcggtagattctataggagctgagacccttcctggcacaggttca agcggtgcatgggatgaggctatccagaaccccggaaggggcttgataaagggaggtatg aaaggacaaaagggagaaccaggtgcccagggcccacctggcccagctgggccccagggt cctgccggtccagtggtccagagccccaactcacaacctgtccctggagcacaaggaccc ccgggacctcaggggccaccagggaaggatggcactccaggaagggatggtgaaccgggt gaccctggtgaagatgggagaccgggtgacactggacctcaaggctttccagggacccca ggagatgtgggccctaagggcgagaagggagatcctggtattgggccccgaggacctcca gggcctccagggccaccaggaccctccttcagacaagacaagctgaccttcattgacatg gagggatccggtttcagcggagacatagagagccttagaggcccacgaggcttccctggc cccccggggccccctggtgtcccaggacttcctggtgagccaggacgctttgggatcaat ggttcctatgcaccaggacctgcaggccttcctggtgtacctgggaaggaaggacccccc ggttttccaggtcccccgggacctccaggtcctccaggcaaagagggcccaccaggagtg gccggccagaaaggcagtgttggtgatgtgggcatcccaggacccaaggggagcaaagga gaccttgggcccatcggtatgcctggcaagtctggcttggctggatcccctgggccagtt ggacccccaggacctccagggcctccagggccaccaggaccaggatttgctgctggattc gatgatatggaaggctctggaatacccctctggacaacagcccgaagctctgatgggctg cagggacctcccgggtcgccgggactcaagggggatcctggagtggcaggcctacctgga gccaagggagaagttggagcagatggagcccagggcatccctggtcccccaggaagagaa ggtgcagctggatctccggggccaaaaggagagaaagggatgccgggagaaaagggaaac ccaggaaaagatggagtgggccggccgggcctccctgggcctccaggacctccagggcct gtgatctatgtgtcaagtgaggataaagcaatagtgagcacgccaggacctgagggcaag ccagggtacgcaggctttcctggacctgctggaccgaagggtgacctgggttccaaaggc gagcagggtcttccggggcccaagggtgagaagggagagccaggcactatctttagtcct gatggcagagctctgggccatccccagaagggagccaagggagagccaggctttcgagga cccccgggtccttatggacgacctgggcacaagggtgaaattggcttccctggacggccg ggtcgacctggaacgaatggcttaaagggagagaaaggagagcctggagatgccagcctt gggttcagcatgaggggattgcctggcccccctgggcctccaggacccccaggtcctcct gggatgcccatctatgacagcaatgcatttgtggagtctggccgacctggactaccagga cagcagggtgtgcaggggccttcaggaccaaagggtgacaaaggagaggtgggcccacct gggccaccagggcaattccccattgacctcttccacctggaagcggaaatgaagggggac aagggagaccgaggggatgctggacagaaaggagagaggggagaacctggggctcctggt ggtggattcttcagctcaagtgtacctggcccccccggcccacctggataccctggaatt ccgggtccaaagggagagagcatccgggggccacctggccctcctggcccgcagggacct cctggcattggctatgagggtcgccagggtcccccaggacctccgggacctccaggacct ccctccttccctggccctcacagacagactgtcagtgttcctggtcctccgggcccacct ggtcctccaggtcccccaggagccatgggtgcctctgctgggcaggtgaggatctgggcc acataccagaccatgctggacaagatccgggaggtgccggagggctggctcatctttgtg gccgagagggaagagctctatgtacgcgttagaaatggcttccggaaggtgctgctggag gcccggacagccctcccgagaggcacgggcaatgaggtggctgctttgcagcccccattg gtccagcttcatgagggcagtccatacacccggagggagtactcctattccacggcacga ccctggcgagcagatgacatcctggccaacccaccgcgcctgccagaccgccagccttac cccggagttccacatcaccacagttcctatgtgcacctgccgccagcccgccccaccctc tcacttgctcatactcatcaggactttcagccagtgctccacctggtggcactgaacacc cccctgtctggaggcatgcgtggtatccgtggagcagatttccagtgcttccagcaagcc cgagccgtggggctgtcgggcaccttccgggctttcctgtcctctaggctgcaggatctc tatagcatcgtgcgccgtgctgaccgggggtctgtgcccatcgtcaacctgaaggacgag gtgctatctcccagctgggactccctgttttctggctcccagggtcaactgcaacccggg gcccgcatcttttcttttgacggcagagatgtcctgagacacccagcctggccgcagaag agcgtatggcacggctcggaccccagtgggcggaggctgatggagagttactgtgagaca tggcgaactgaaactactggggctacaggtcaggcctcctccctgctgtcaggcaggctc ctggaacagaaagctgcgagctgccacaacagctacatcgtcctgtgcattgagaatagc ttcatgacctctttctccaaatag

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