| Entry |
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| Symbol |
Col2a1, Col2, Col2a, Col2a-1, Del1, Dmm, Lpk, M100413, Rgsc413, Rgsc856
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| Name |
(RefSeq) collagen, type II, alpha 1
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| KO |
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| Organism |
mmu Mus musculus (house mouse)
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| Pathway |
| mmu04974 | Protein digestion and absorption |
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| Brite |
KEGG Orthology (KO) [BR:mmu00001]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
12824 (Col2a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
12824 (Col2a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
12824 (Col2a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
12824 (Col2a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
12824 (Col2a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:mmu00536]
12824 (Col2a1)
Glycosaminoglycan binding proteins [BR:mmu00536]
Heparan sulfate / Heparin
Extracellular matrix molecules
12824 (Col2a1)
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| SSDB |
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| Motif |
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| Other DBs |
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| Structure |
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| LinkDB |
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| Position |
15:complement(97873483..97902525)
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| AA seq |
1487 aa
MIRLGAPQSLVLLTLLIAAVLRCQGQDAQEAGSCLQNGQRYKDKDVWKPSSCRICVCDTG
NVLCDDIICEDPDCLNPEIPFGECCPICPADLATASGKLGPKGQKGEPGDIRDIIGPRGP
PGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPAGPPGPPGPPGLSAGNFA
AQMAGGYDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPAGKPGDDGEAGKPGKSGERGLPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGSRGEPGNPGSPGPAGASGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQAGEPGIAGFKGDQGPKGETGPAGPQG
APGPAGEEGKRGARGEPGGAGPIGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLTG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPSGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKQGDQGIPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRG
LPGTPGTDGPKGAAGPDGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPSGSTGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGDQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGANGNPGPAGPPGPAGKDGPKGVRGDSGPPGRAGDPGLQGPAGAPGEKGEPG
DDGPSGLDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGALGAPGAPGPPGSPGPAG
PTGKQGDRGEAGAQGPMGPSGPAGARGIAGPQGPRGDKGESGEQGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGSNGIPGPIGPPGPRGRSGETGPVG
PPGSPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPMQYMRADEADSTLRQHDVEVDATLK
SLNNQIESIRSPDGSRKNPARTCQDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPATVPRKNWWSSKSKEKKHIWFGETMNGGFHFSYGDGNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEMRAEGNSRFTYTALKDGCTK
HTGKWGKTVIEYRSQKTSRLPIIDIAPMDIGGAEQEFGVDIGPVCFL |
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| NT seq |
4464 nt +upstreamnt +downstreamnt
atgatccgcctcggggctccccagtcgctggtgctgctgacgctgctcatcgccgcggtc
ctacggtgtcagggccaggatgcccaggaggctggcagctgtctgcagaatgggcagagg
tataaagataaggatgtatggaagccctcatcttgccgcatctgtgtgtgtgacactggg
aatgtcctctgcgatgacattatctgtgaagacccagactgcctcaaccccgagatcccc
ttcggagagtgctgtcccatctgcccagctgacctcgccactgccagtggaaaattaggg
ccaaaggggcagaaaggagaacctggagatatcagagatatcataggacccagaggacct
cctggccctcagggacctgcaggtgaacaaggacccagaggtgatcgtggtgacaaggga
gaaaagggtgcgcctggaccccgtggcagagatggagaacctggtacccctggaaatcct
ggccccgctggccctccaggtccccctggtccccctggccttagtgcaggaaacttcgcg
gctcagatggctggagggtatgacgagaaggctggtggtgcccagatgggagtcatgcaa
gggcccatgggccccatgggaccccgtggacccccaggccctgccggtgcccccggccct
caaggatttcaaggcaatcctggtgaacctggcgagcctggtgtctctggtcccatgggt
ccccgaggtcctcctggccctgctggaaaacctggtgacgacggtgaagctgggaagccc
ggaaagtctggggaaagaggcctccctggccctcagggtgctcgtggattcccaggaacc
ccgggtctccccggtgtcaagggtcacagaggttacccaggcctcgacggtgctaagggg
gaagctggtgctccgggtgtgaagggtgagagtggttcccctggtgagaacggatccccg
ggcccaatgggtccccgtggcctgcctggtgagagaggacggactggccctgctggtgct
gctggtgctcggggtaacgatggccagccaggccccgctggacctccgggtcctgtgggt
cccgcaggtggtcctggcttccctggtgctcctggtgccaagggcgaagctggtcccact
ggtgctcgcggtcctgaaggtgctcaaggttctcgtggcgagcctggcaatcctgggtcc
cctgggcctgcaggtgcttctggtaacccagggactgatggtattcctggagccaaagga
tccgctggtgctcctggaattgctggtgcccctggcttccctgggccccgtggccctccc
ggtcctcaaggtgcaactggtccccttggccccaaaggtcaggcgggtgaacctggcatt
gctggctttaaaggtgatcaaggccccaagggagagactggacctgctgggccccaagga
gcccctggccccgctggtgaagaaggcaaacgaggtgctcgaggagagccgggtggtgct
ggaccaatcggaccccctggagagagaggtgctcctggcaaccgtggattcccaggtcaa
gatggtctggcaggtcccaagggtgcccctggagagcgagggcccagtggcttgactggt
cccaagggagccaacggtgacccgggtcgtcctggagaacctggtcttcctggagccagg
ggtcttaccggtcgccctggtgacgctggtcctcaaggcaaagttggtccttctggagcc
cctggtgaagacggtcgccctggacctcctggtcctcagggagctcgtgggcagcctggc
gtcatgggtttccctggccccaaaggtgccaacggcgagcctggcaaagctggtgagaag
ggtctggctggcgctcctggtctgagaggtcttcctggaaaagacggtgagacgggagcc
gcaggaccccccggccccagtggacctgctggtgaacgaggcgagcagggcgctcctgga
ccatcagggttccagggacttcctggccctcccggtcccccaggtgaaggtggaaagcaa
ggtgaccagggtattcctggtgaagctggagctcctggccttgtgggtcctcggggcgag
cgaggtttcccaggtgaacgtggctctcctggtgctcagggccttcagggtccccgaggc
ctccctggcactcctggtactgatggtcccaaaggtgcagctggcccagatggcccccct
ggggctcaggggcctccaggtctacagggaatgcctggtgagagaggagccgctggcatt
gctgggcccaagggagacagaggcgatgttggcgagaaaggcccagagggagctcctggg
aaggatggcggccgaggtctgactgggcccatcggacccccaggcccagcaggggccaac
ggcgagaagggagaagtcggacctcctggcccgtcaggaagtaccggagctcgaggtgcc
ccgggtgaacgcggagagaccgggccacctggacctgctggattcgctggccctcctggt
gctgatggccagcctggtgccaagggtgatcaaggagaagccggacagaaaggagatgct
ggtgcccccggcccacaaggcccctcgggagcccctgggccacagggtcctactggagtg
actggtcctaagggagcccgaggtgcccaaggtcccccgggagccaccggattccctgga
gctgctggccgagttggacccccaggtgctaatggcaatcctggacccgccggtccccct
ggtcctgctggaaaagatggtcccaaaggtgttcgaggagacagtggcccccctggcaga
gctggtgaccccggtcttcaaggtcctgcaggagctcctggcgagaaaggagaacctgga
gatgatggtccctctggtcttgatggtcctccaggtccccaggggctggctggtcaaagg
ggcattgttggtctgcctggtcagcgtggtgagagaggattccccggccttcccggccca
tcgggtgagcccggcaagcagggtgcacctggcgcgtctggagacagaggtcctcctggt
cctgtggggcctcctggcctgacagggcctgcaggtgaacctggacgagagggcagccct
ggtgctgatggaccccctggaagagatggtgcagctggagtcaagggagatcgtggtgag
actggagcactgggtgcccctggagctcctgggcccccaggctctcctggtcctgctggc
ccaactggcaaacaaggagacagaggagaggctggtgcacaaggtcctatgggtccctca
ggacctgctggagcccgtgggattgcaggccctcaaggcccccgaggtgacaaaggagaa
tctggagagcagggcgagaggggactgaagggacaccgaggtttcactggactgcagggt
ctgcctggccctccgggtccttctggagatcagggtgcttctggccctgctggtccttct
ggccctagaggtccacctggccctgttggtccctctggcaaagatggctctaatggaatc
cctggccccatcgggcctccaggtccccgtggacgctcaggagaaacaggccctgttggt
ccccctggaagtcccggtcctcctggccctccaggtcctcctggtcctggcatcgacatg
tcagcctttgctggcttagggcagagagagaagggccccgaccccatgcagtacatgcgg
gccgacgaggcagacagtaccttgagacagcacgacgtggaggtggacgctacactcaag
tcactgaacaaccagattgagagcatccgcagccccgacggctcccgcaagaaccctgct
cgcacttgccaagacctgaaactctgccaccccgagtggaagagcggagactactggatt
gatcccaaccagggctgcaccttggacgccatgaaagttttctgcaacatggagaccggc
gagacttgcgtctaccccaacccagcgactgtccctcggaaaaactggtggagcagcaag
agcaaggaaaagaaacacatctggtttggagagaccatgaacggtggcttccacttcagc
tatggcgatggcaacctggctcccaacaccgctaacgtccagatgactttcctccgtcta
ctgtccactgagggctcccagaacatcacctaccactgtaagaacagcatcgcctacctg
gacgaagcggctggcaacctcaagaaggccttgctcatccagggctccaatgatgtagag
atgagggccgagggcaacagcaggttcacatacactgccctgaaggatggctgcacgaaa
cacactggtaagtggggcaagaccgtcatcgagtaccgatcacagaagacctcccgcctt
cccattattgacatcgcacccatggacattggaggggctgaacaggaatttggtgtggac
atagggcctgtctgcttcttgtaa |
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