Mus musculus (house mouse): 12826
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Entry
12826 CDS
T01002
Symbol
Col4a1, Bru, Col4a-1, Raw, Svc
Name
(RefSeq) collagen, type IV, alpha 1
KO
K06237
collagen type IV alpha
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu04151
PI3K-Akt signaling pathway
mmu04510
Focal adhesion
mmu04512
ECM-receptor interaction
mmu04820
Cytoskeleton in muscle cells
mmu04926
Relaxin signaling pathway
mmu04933
AGE-RAGE signaling pathway in diabetic complications
mmu04974
Protein digestion and absorption
mmu05146
Amoebiasis
mmu05165
Human papillomavirus infection
mmu05200
Pathways in cancer
mmu05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
12826 (Col4a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
12826 (Col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
12826 (Col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
12826 (Col4a1)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
12826 (Col4a1)
09154 Digestive system
04974 Protein digestion and absorption
12826 (Col4a1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
12826 (Col4a1)
09162 Cancer: specific types
05222 Small cell lung cancer
12826 (Col4a1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
12826 (Col4a1)
09174 Infectious disease: parasitic
05146 Amoebiasis
12826 (Col4a1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
12826 (Col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mmu04147
]
12826 (Col4a1)
00536 Glycosaminoglycan binding proteins [BR:
mmu00536
]
12826 (Col4a1)
Exosome [BR:
mmu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
12826 (Col4a1)
Glycosaminoglycan binding proteins [BR:
mmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
12826 (Col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
12826
NCBI-ProteinID:
NP_034061
MGI:
88454
Ensembl:
ENSMUSG00000031502
UniProt:
P02463
LinkDB
All DBs
Position
8:complement(11248423..11362889)
Genome browser
AA seq
1669 aa
AA seq
DB search
MGPRLSVWLLLLFAALLLHEERSRAAAKGDCGGSGCGKCDCHGVKGQKGERGLPGLQGVI
GFPGMQGPEGPHGPPGQKGDAGEPGLPGTKGTRGPPGAAGYPGNPGLPGIPGQDGPPGPP
GIPGCNGTKGERGPLGPPGLPGFSGNPGPPGLPGMKGDPGEILGHVPGTLLKGERGFPGI
PGMPGSPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGSSFQGPKGDKGEQGVSGPP
GVPGQAQVKEKGDFAPTGEKGQKGEPGFPGVPGYGEKGEPGKQGPRGKPGKDGEKGERGS
PGIPGDSGYPGLPGRQGPQGEKGEAGLPGPPGTVIGTMPLGEKGDRGYPGAPGLRGEPGP
KGFPGTPGQPGPPGFPTPGQAGAPGFPGERGEKGDQGFPGVSLPGPSGRDGAPGPPGPPG
PPGQPGHTNGIVECQPGPPGDQGPPGTPGQPGLTGEVGQKGQKGESCLACDTEGLRGPPG
PQGPPGEIGFPGQPGAKGDRGLPGRDGLEGLPGPQGSPGLIGQPGAKGEPGEIFFDMRLK
GDKGDPGFPGQPGMPGRAGTPGRDGHPGLPGPKGSPGSIGLKGERGPPGGVGFPGSRGDI
GPPGPPGVGPIGPVGEKGQAGFPGGPGSPGLPGPKGEAGKVVPLPGPPGAAGLPGSPGFP
GPQGDRGFPGTPGRPGIPGEKGAVGQPGIGFPGLPGPKGVDGLPGEIGRPGSPGRPGFNG
LPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEKGSIGGPGVPGEQGLTGPPGLQGI
RGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQGPPGSSGPPGIKGEKGFPGFPGLDMPG
PKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGTPG
LPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQKGDQGEKGQIG
PTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGTPGSPGLPGPKGSVGGMGLPG
SPGEKGVPGIPGSQGVPGSPGEKGAKGEKGQSGLPGIGIPGRPGDKGDQGLAGFPGSPGE
KGEKGSAGTPGMPGSPGPRGSPGNIGHPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLPGT
PGPTGPAGQKGEPGSDGIPGSAGEKGEQGVPGRGFPGFPGSKGDKGSKGEVGFPGLAGSP
GIPGVKGEQGFMGPPGPQGQPGLPGTPGHPVEGPKGDRGPQGQPGLPGHPGPMGPPGFPG
INGPKGDKGNQGWPGAPGVPGPKGDPGFQGMPGIGGSPGITGSKGDMGLPGVPGFQGQKG
LPGLQGVKGDQGDQGVPGPKGLQGPPGPPGPYDVIKGEPGLPGPEGPPGLKGLQGPPGPK
GQQGVTGSVGLPGPPGVPGFDGAPGQKGETGPFGPPGPRGFPGPPGPDGLPGSMGPPGTP
SVDHGFLVTRHSQTTDDPLCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPISGDNIRPFISRCAVCEAPAMVMAV
HSQTIQIPQCPNGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggggccccggctcagcgtctggcttctgctgctcttcgccgcccttctgctccacgag
gagcgcagccgagcagctgcgaagggcgattgtggtggctctggctgtggaaaatgtgac
tgtcatggcgtgaagggacaaaagggagaaagaggcttgccagggttgcaaggtgtcatt
ggatttcccgggatgcaaggacctgaggggccacatggaccaccaggacaaaagggtgat
gctggagaacctggacttcctggcacaaaagggacgaggggaccccctggagcagctggc
taccctgggaatcccggacttcctggtattcctggccaagatggccctccaggtccccca
ggtatcccaggatgcaacggtacaaagggagagagagggccgctcggtcctcctggcttg
cctggattcagcggcaatcctggaccaccagggttaccaggaatgaagggagatcctggt
gaaattctcggccacgttcccggaacactgctgaaaggggagagaggatttcctggtatc
cccgggatgccgggctcaccagggttgccaggactccagggacccgtgggtcctccggga
tttactggaccaccgggtcctccaggccctcctggacctcctggagaaaagggccagatg
ggctccagcttccaaggaccaaaaggtgacaagggagagcaaggggtcagcggtcccccg
ggagttcctggacaggcacaagttaaggaaaaaggagactttgccccaacaggagaaaag
ggtcagaaaggtgaacctggatttccgggagtaccaggatatggagagaaaggtgaacct
ggcaagcaagggcctcggggaaaacctgggaaagacggtgaaaaaggagaaagggggagc
ccgggcattcctggcgattccgggtacccaggtctcccaggccggcagggcccgcaggga
gagaagggtgaagctggacttccaggcccccctggaactgtgataggcaccatgcctttg
ggagagaaaggagatcgaggctacccaggagcaccagggttgagaggagagcccggccct
aaaggtttccctggaacaccaggccaaccaggccctccaggtttccctactccaggccag
gctggtgctccaggcttcccaggtgaaaggggagaaaaaggtgaccagggatttccaggc
gtgtcattgccaggaccaagtggaagagatggagccccggggcctcccggccctcccggc
ccccctgggcagccaggccacacaaatggcattgtggagtgtcaacctggaccacccggg
gaccagggccctcctgggactccaggacagccaggtttgacaggtgaagttggacagaaa
ggtcagaaaggagagagctgccttgcctgtgacacagaaggacttcgtggccctccaggg
ccacaggggcctccgggagagattggtttccctggacaacctggggctaaaggtgaccga
ggcctgcccggcagagatggtcttgaaggattgccgggtccacaaggttcaccagggctt
ataggccagcctggagctaagggagagcctggagagatattttttgacatgcgactcaaa
ggtgacaaaggagacccaggttttccgggacagcctggcatgccaggaagagcaggaact
cccggaagagatggccacccaggactccctggacccaaaggctctccgggttcaatagga
ttgaaaggagagcgaggtcctcccggaggagttggcttccctggtagtcgtggagacatc
ggccctcctggacccccaggagttggccccattggtcctgttggtgaaaaaggacaagca
ggctttcctggaggccctgggtccccaggtcttccaggcccaaagggtgaggcaggaaag
gttgtcccactccctggccccccaggagctgcaggacttccaggatcccctggcttccca
gggccacaaggtgaccgaggcttcccaggaaccccaggacgtccaggcatcccgggagag
aaaggtgctgtgggccagccaggaattggatttcctgggcttcctggccccaaaggtgtt
gatggcttgcctggagagataggacggcctgggagtccaggtcgccctggatttaacggc
ttacctggcaacccaggacctcaaggtcaaaagggagaacctggcattgggcttccagga
ctcaaagggcaaccaggccttccaggcattcccggtacacctggagagaagggtagcatc
gggggacccggcgttccaggagaacaggggttgacaggccccccaggactccaggggatc
agaggtgacccagggcctcctggagttcaaggcccagcaggtccaccaggggtcccagga
atagggccacccggagctatgggccctcccggagggcaaggaccaccagggtcatcaggt
ccacctggaattaaaggagagaaagggttccctggattccccggactggatatgcctggc
cccaaaggcgataaaggctctcaaggacttcctggcctcacaggacagtcaggcctccct
ggccttcctggacagcaggggacacctggagttccagggttcccaggttctaaaggtgaa
atgggtgtcatgggaaccccgggacaaccaggctcgccaggaccagcaggcaccccaggg
ttacctggagaaaaaggggaccatggccttccgggctcctcaggacccaggggcgaccct
ggcttcaaaggtgataaaggtgacgttgggcttcctggcatgccaggatccatggagcat
gtggacatggggagcatgaagggacagaaaggagaccagggagagaaaggacaaatcgga
cccactggtgataaaggttcccgaggagaccctggaacaccaggagtacctgggaaggat
gggcaggcagggcatcccggacagccagggcctaaaggtgacccaggccttagtgggaca
ccaggatcccctggactccctggacccaaaggatcagttggaggaatgggcttgccaggt
tcgcctggagaaaaaggtgtgcctggcatccctggctcacagggtgtccctggctcacct
ggagagaagggagccaaaggagagaaagggcagtcaggtctacctggcattgggattccg
ggacggcctggtgacaagggagaccagggccttgctggcttcccaggcagccccggtgag
aagggagagaaaggcagtgccggaaccccagggatgccagggtccccaggcccgagaggt
tctccggggaacatcggccatccaggaagcccaggcctgcctggagagaaaggggataaa
ggcctcccaggactggatggcgttcctggtgtcaaaggagaagcaggtctccctgggact
cctggccccacaggcccagctggccagaagggagagccgggcagcgatggaatcccgggg
tcggcaggagagaagggtgaacaaggtgttccaggaagaggcttccccggcttccctggc
tccaaaggagacaaaggctccaagggtgaagtgggtttccctggcctagctggaagtcct
ggaattcctggagtcaaaggcgagcaagggttcatgggtcctcctggccctcaaggacaa
cctggcttacctggcactcctggtcaccctgtggaggggcccaaaggagaccgaggacct
cagggtcaacctggcctgccagggcatccgggacctatggggccgccagggttcccagga
atcaatgggccaaaaggtgacaagggaaatcaaggttggccaggagctccgggggttcca
ggccctaagggagacccaggattccaaggcatgccgggcattggcggctctccagggatc
acaggttcaaagggagatatgggactgcccggagttccaggatttcaaggtcagaaaggg
cttcctggtctgcagggagtgaaaggagaccagggagaccaaggtgtacccggccctaaa
ggtctccaaggtccccctgggcctccaggtccctacgatgtcatcaaaggagaaccaggg
ctccctggtcctgagggtccccctggtcttaaaggactccagggaccaccaggtccaaaa
ggacagcaaggtgtgacaggctcagtgggcttgcctggacctccaggtgtccctgggttc
gatggtgctcctggccagaaaggagagacaggaccctttggaccacctggtccaagaggg
tttcctggcccaccaggccccgatgggctgccaggatccatgggtcccccaggtacccca
tctgtggaccatggcttccttgtgaccaggcatagtcagacaacagatgacccactgtgt
cccccagggaccaaaattctttaccatggatactctctgctctatgtccaaggcaacgag
cgtgcccacgggcaggacttgggtacggctggcagctgcctgcgtaagttcagcaccatg
ccctttctcttctgcaacatcaacaacgtctgcaacttcgcctccaggaacgactactct
tactggctgtccacgccagagcccatgcccatgtccatggcacccatctctggggacaac
atccggcccttcattagcaggtgtgcggtttgtgaagcaccggccatggtgatggcggta
cacagtcagaccattcagattccgcagtgccctaacggttggtcctcactgtggatcggc
tattccttcgtgatgcacaccagcgctggtgctgaaggttccggccaagccctcgcatcc
cccgggtcctgtctggaagagtttagaagcgccccattcatcgagtgccacggcagagga
acgtgcaattactacgcaaatgcttacagcttttggctcgccaccatagagagaagcgag
atgttcaagaagcccacgccatccaccttgaaggcaggggagctgcgaacacacgtcagc
cgctgccaagtgtgcatgagaagaacataa
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