Mus musculus (house mouse): 12829
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Entry
12829 CDS
T01002
Symbol
Col4a4, E130010M05Rik, [a]4(IV)
Name
(RefSeq) collagen, type IV, alpha 4
KO
K06237
collagen type IV alpha
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu04151
PI3K-Akt signaling pathway
mmu04382
Cornified envelope formation
mmu04510
Focal adhesion
mmu04512
ECM-receptor interaction
mmu04820
Cytoskeleton in muscle cells
mmu04926
Relaxin signaling pathway
mmu04933
AGE-RAGE signaling pathway in diabetic complications
mmu04974
Protein digestion and absorption
mmu05146
Amoebiasis
mmu05165
Human papillomavirus infection
mmu05200
Pathways in cancer
mmu05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
12829 (Col4a4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
12829 (Col4a4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
12829 (Col4a4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
12829 (Col4a4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
12829 (Col4a4)
09154 Digestive system
04974 Protein digestion and absorption
12829 (Col4a4)
09158 Development and regeneration
04382 Cornified envelope formation
12829 (Col4a4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
12829 (Col4a4)
09162 Cancer: specific types
05222 Small cell lung cancer
12829 (Col4a4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
12829 (Col4a4)
09174 Infectious disease: parasitic
05146 Amoebiasis
12829 (Col4a4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
12829 (Col4a4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mmu04147
]
12829 (Col4a4)
00536 Glycosaminoglycan binding proteins [BR:
mmu00536
]
12829 (Col4a4)
Exosome [BR:
mmu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
12829 (Col4a4)
Glycosaminoglycan binding proteins [BR:
mmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
12829 (Col4a4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
12829
NCBI-ProteinID:
NP_031761
MGI:
104687
Ensembl:
ENSMUSG00000067158
UniProt:
Q9QZR9
LinkDB
All DBs
Position
1:complement(82426140..82564570)
Genome browser
AA seq
1682 aa
AA seq
DB search
MRCFFRWTKSFVTAPWSLIFILFTIQYEYGSGKKYGGPCGGRNCSVCQCFPEKGSRGHPG
PLGPQGPIGPLGPLGPIGIPGEKGERGDSGSPGPPGEKGDKGPTGVPGFPGVDGVPGHPG
PPGPRGKPGVDGYNGSRGDPGYPGERGAPGPGGPPGQPGENGEKGRSVYITGGVKGIQGD
RGDPGPPGLPGSRGAQGSPGPMGHAGAPGLAGPIGHPGSPGLKGNPATGLKGQRGEPGEV
GQRGPPGPTLLVQPPDLSIYKGEKGVKGMPGMIGPPGPPGRKGAPGVGIKGEKGIPGFPG
PRGEPGSHGPPGFPGFKGIQGAAGEPGLFGFLGPKGDLGDRGYPGPPGILLTPAPPLKGV
PGDPGPPGYYGEIGDVGLPGPPGPPGRPGETCPGMMGPPGPPGVPGPPGFPGEAGVPGRL
DCAPGKPGKPGLPGLPGAPGPEGPPGSDVIYCRPGCPGPMGEKGKVGPPGRRGAKGAKGN
KGLCTCPPGPMGPPGPPGPPGRQGSKGDLGLPGWHGEKGDPGQPGAEGPPGPPGRPGAMG
PPGHKGEKGDMVISRVKGQKGERGLDGPPGFPGPHGQDGGDGRPGERGDPGPRGDHKDAA
PGERGLPGLPGPPGRTGPEGPPGLGFPGPPGQRGLPGEPGRPGTRGFDGTKGQKGDSILC
NVSYPGKPGLPGLDGPPGLKGFPGPPGAPGMRCPDGQKGQRGKPGMSGIPGPPGFRGDMG
DPGIKGEKGTSPIGPPGPPGSPGKDGQKGIPGDPAFGDPGPPGERGLPGAPGMKGQKGHP
GCPGAGGPPGIPGSPGLKGPKGREGSRGFPGIPGSPGHSCERGAPGIPGQPGLPGTPGDP
GAPGWKGQPGDMGPSGPAGMKGLPGLPGLPGADGLRGPPGIPGPNGEDGLPGLPGLKGLP
GLPGFPGFPGERGKPGPDGEPGRKGEVGEKGWPGLKGDLGERGAKGDRGLPGDAGEAVTS
RKGEPGDAGPPGDGGFSGERGDKGSSGMRGGRGDPGRDGLPGLHRGQPGIDGPPGPPGPP
GPPGSPGLRGVIGFPGFPGDQGDPGSPGPPGFPGDDGARGPKGYKGDPASQCGPPGPKGE
PGSPGYQGRTGVPGEKGFPGDEGPRGPPGRPGQPGSFGPPGCPGDPGMPGLKGHPGEVGD
PGPRGDAGDFGRPGPAGVKGPLGSPGLNGLHGLKGEKGTKGASGLLEMGPPGPMGMPGQK
GEKGDPGSPGISPPGLPGEKGFPGPPGRPGPPGPAGAPGRAAKGDIPDPGPPGDRGPPGP
DGPRGVPGPPGSPGNVDLLKGDPGDCGLPGPPGSRGPPGPPGCQGPPGCDGKDGQKGPMG
LPGLPGPPGLPGAPGEKGLPGPPGRKGPVGPPGCRGEPGPPADVDSCPRIPGLPGVPGPR
GPEGAMGEPGRRGLPGPGCKGEPGPDGRRGQDGIPGSPGPPGRKGDTGEAGCPGAPGPPG
PTGDPGPKGFGPGSLSGFLLVLHSQTDQEPACPVGMPRLWTGYSLLYMEGQEKAHNQDLG
LAGSCLPVFSTLPFAYCNIHQVCHYAQRNDRSYWLSSAAPLPMMPLSEEEIRSYISRCAV
CEAPAQAVAVHSQDQSIPPCPRTWRSLWIGYSFLMHTGAGDQGGGQALMSPGSCLEDFRA
APFVECQGRQGTCHFFANEYSFWLTTVNPDLQFASGPSPDTLKEVQAQRRKISRCQVCMK
HS
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atgaggtgctttttcagatggaccaagtcctttgtcacagccccctggtcactaatattt
atcctctttactatacaatatgaatatgggagtggcaagaagtatggcggcccctgcgga
ggaagaaactgctctgtctgccagtgttttcctgagaagggatctcggggtcacccagga
ccactgggaccacagggaccaatagggcccttgggacccctgggacctattgggattcca
ggagaaaaaggagagagaggagacagtggctcacctggaccaccaggagagaaaggagac
aagggtccaactggtgtccctggatttccaggtgtggatggtgtacctggtcacccaggg
cctcctggacccagaggcaaacctggtgtggacggctacaatggctcacgtggtgatccg
ggctatccaggagaaagaggagctccaggcccaggcggcccccctggtcagcctggggaa
aatggagaaaaaggaagatctgtgtacattactggtggcgttaaaggtattcagggagac
cgtggggacccaggaccacccggcttaccaggatctaggggtgcacaagggtcaccaggg
cccatggggcatgcaggcgcaccagggctagcaggacctataggtcatcctggaagccct
gggttgaagggaaatcctgccactggactgaagggacaaaggggagagccgggtgaagtt
ggccagcgtggtcctcctgggcccacgctgttggtacagccgcctgatttgagtatctat
aaaggagaaaagggtgtaaaaggaatgcctggaatgattggtcccccaggacctccaggt
cgcaagggagcgcctggtgtcgggatcaaaggagagaaaggtatccctgggttcccagga
ccccggggtgagcctggttcgcatgggcctccaggttttccaggattcaaggggatacaa
ggagcagctggagagcctgggctgttcggatttcttggtccaaagggggatctgggagat
cgcgggtacccgggaccaccaggcattttgttgactccagctccaccactcaaaggtgtt
ccaggggacccaggaccccctggctactatggggagattggagatgttggattaccaggt
cctccagggcccccaggcagaccaggggaaacttgtccaggcatgatgggacctcctgga
ccaccaggggttcctggtcctccaggatttccaggagaagctggggttcctggaagactc
gactgtgccccaggaaaacctgggaagccagggctacccggcctgcctggcgcaccagga
ccagaggggccccctggatcagatgtgatatactgtcgccctgggtgccctgggccaatg
ggtgaaaagggaaaagtgggtcctccaggaagaagaggagccaaaggagcaaaaggaaac
aagggactctgtacctgtccacctggtcccatgggaccccctggtcccccaggacctcct
ggaagacaaggaagtaaaggagacttagggctccctggttggcatggagaaaagggcgat
ccaggtcagcctggtgctgaaggaccgccagggccaccaggaagacctggtgccatgggg
ccccctggtcacaaaggggaaaagggtgacatggtcatatcaagagtgaaagggcaaaaa
ggagaaagaggactggatgggccaccaggatttccggggccacatggacaagatggtggg
gatggacgtcctggagaaagaggggatcctgggccacgaggggaccataaggatgcagcc
ccgggtgagagagggcttcccggactgccaggccctccaggaagaacaggacctgagggg
cctccaggcctgggatttccaggcccaccaggacagcgaggcctacccggagagcccggg
cgtccgggcaccagaggctttgatggcacgaaggggcagaaaggtgactccattctgtgt
aatgtaagctacccgggaaaaccaggtctgccaggtcttgatggacctccaggtctgaag
gggtttccaggccccccaggggctcctggtatgagatgtccagatgggcagaaaggccag
cggggcaaaccgggaatgtctgggattccaggtccacctggttttcgtggtgacatggga
gatccaggcatcaaaggtgaaaaggggacctcccctattggacccccaggcccacctggg
tctcctggaaaggatggccagaaaggaatcccaggagaccctgcatttggtgacccagga
ccccctggagagaggggtcttccaggagcaccaggcatgaaaggacagaaaggtcaccca
gggtgcccaggggctggaggccctcctggcatccctggatctccaggtctcaaaggtccc
aaaggtagagagggaagtcgtggctttccagggatcccaggatcccctggccattcctgt
gaaagaggtgctcccgggatcccaggacaaccgggacttcctggaactccaggtgatcca
ggggccccaggttggaaaggccagccaggagacatgggtccctctggaccagctgggatg
aagggcctccctggtctcccaggcctaccaggagctgatggtctccgagggcctcctggg
attccaggccccaatggggaagatggtctacctggtcttccaggcctgaagggactccca
gggctgcctggcttccctggttttccaggagagagaggaaagccagggccagatggagaa
cctggaagaaagggagaggttggagagaaaggctggcctggcttgaagggagacctggga
gagcgaggcgccaaaggagacagaggacttcctggtgatgcaggagaagcagtcacttcc
agaaagggtgaacctggggatgctgggcctccaggagatggtgggttctcaggagagaga
ggtgataaaggaagctcagggatgcgagggggaagaggggatcccggaagagatggacta
ccgggactccacagagggcagcctgggatagatgggcctcctgggcctcctgggccccct
ggccctccaggatcacctggactgagaggagtcattggtttcccaggatttccaggtgac
cagggtgatccaggttctccaggaccccctggattcccaggagatgatggagcaagagga
cctaaaggatacaaaggtgaccctgccagtcagtgtggtccacctggtccaaagggtgag
ccaggtagtcctggataccaaggacgtactggagtccccggagagaaaggctttcctgga
gatgaaggaccccgaggaccaccaggcagacctggacagcctggatcttttggaccacca
gggtgtccaggtgacccagggatgcccggactcaagggacatccaggagaagtgggagac
cctgggccaagaggtgatgcgggagatttcgggaggccaggtcctgctggagtgaaaggg
cctctcgggtctcctggtctgaatggcttacatggtctgaagggtgagaaaggaacaaaa
ggcgcctcaggtttgctcgaaatgggtccacctgggccaatggggatgcctgggcaaaaa
ggagagaaaggagaccctgggagtccagggatttctcctccaggtcttcctggagaaaag
ggcttcccaggacccccagggagaccaggaccacctggtcccgcaggtgccccaggaaga
gctgctaaaggtgacattcctgatccaggtccacctggagaccggggacctcctggcccc
gatggcccaagaggagtacctgggcctccgggttcccctgggaatgttgaccttctgaaa
ggggacccaggtgactgtggtttgccaggaccacctggctcccgaggcccaccaggccct
ccagggtgtcagggtcccccaggatgtgatggcaaagatggccagaaaggaccaatggga
cttccagggttgccagggccacctggtcttcctggggcacctggcgagaagggattacct
ggccctccaggcagaaaagggccagtaggtcctccaggctgcagaggtgaacctgggcct
cctgcagacgtggattcctgtcctcgaatcccaggacttcctggagtgccaggtcccaga
ggaccagaaggagctatgggggaacctggacggagaggcctgcctggaccagggtgcaaa
ggagagcctggaccggatggcagacggggccaggatggcatccctggatctcccgggcct
cctggacgcaaaggtgacactggagaggcagggtgtcctggagcaccaggccctcctggt
ccaactggtgatcctgggcccaaggggtttggccctggatcgctcagtggcttcctcctg
gttctccacagtcagactgaccaggaaccggcctgccccgtgggcatgcctcggctttgg
acagggtacagcttgttgtacatggaaggacaggagaaggcgcacaatcaagatcttggt
ttggcaggctcttgtcttcctgtgtttagcactctgccctttgcctactgcaacatccac
caagtgtgccactacgcccagagaaatgacaggtcctactggctgtccagtgcggctcct
cttcctatgatgccactctcagaggaagagatccgctcttacatcagccgctgtgcggtg
tgtgaggccccagcacaggccgtggcggtccacagtcaggaccaatccatcccaccgtgt
ccacggacatggaggagtctctggattgggtactcatttctgatgcacactggagctggg
gaccaaggaggtgggcaggcactgatgtcacctggcagctgcctagaggacttcagagct
gcaccgttcgttgaatgccagggccgacagggaacctgtcacttttttgcaaacgagtac
agcttctggctgaccaccgtgaacccagacctgcagtttgcctctggcccgtcaccagac
accttgaaagaagttcaggcccagcgccggaaaatcagcaggtgccaggtttgcatgaag
cacagctaa
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