Mus musculus (house mouse): 12833
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Entry
12833 CDS
T01002
Symbol
Col6a1, Col6a-1
Name
(RefSeq) collagen, type VI, alpha 1
KO
K06238
collagen type VI alpha
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu04151
PI3K-Akt signaling pathway
mmu04510
Focal adhesion
mmu04512
ECM-receptor interaction
mmu04820
Cytoskeleton in muscle cells
mmu04974
Protein digestion and absorption
mmu05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
12833 (Col6a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
12833 (Col6a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
12833 (Col6a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
12833 (Col6a1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
12833 (Col6a1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
12833 (Col6a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mmu04147
]
12833 (Col6a1)
00536 Glycosaminoglycan binding proteins [BR:
mmu00536
]
12833 (Col6a1)
Exosome [BR:
mmu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
12833 (Col6a1)
Glycosaminoglycan binding proteins [BR:
mmu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
12833 (Col6a1)
Hyaluronan
Extracellular matrix or blood plasma proteins
12833 (Col6a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
YcaO
Motif
Other DBs
NCBI-GeneID:
12833
NCBI-ProteinID:
NP_034063
MGI:
88459
Ensembl:
ENSMUSG00000001119
UniProt:
Q04857
B0LAD9
LinkDB
All DBs
Position
10:complement(76544626..76561869)
Genome browser
AA seq
1025 aa
AA seq
DB search
MRLAHALLPLLLQACWVATQDIQGSKAIAFQDCPVDLFFVLDTSESVALRLKPYGALVDK
VKSFTKRFIDNLRDRYYRCDRNLVWNAGALHYSDEVEIIRGLTRMPSGRDELKASVDAVK
YFGKGTYTDCAIKKGLEELLIGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAKH
LGIKVFSVAITPDHLEPRLSIIATDHTYRRNFTAADWGHSRDAEEVISQTIDTIVDMIKN
NVEQVCCSFECQAARGPPGPRGDPGYEGERGKPGLPGEKGEAGDPGRPGDLGPVGYQGMK
GEKGSRGEKGSRGPKGYKGEKGKRGIDGVDGMKGETGYPGLPGCKGSPGFDGIQGPPGPK
GDAGAFGMKGEKGEAGADGEAGRPGNSGSPGDEGDPGEPGPPGEKGEAGDEGNAGPDGAP
GERGGPGERGPRGTPGVRGPRGDPGEAGPQGDQGREGPVGIPGDSGEAGPIGPKGYRGDE
GPPGPEGLRGAPGPVGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGNRGPPGLNGTKG
YPGLKGDEGEVGDPGEDNNDISPRGVKGAKGYRGPEGPQGPPGHVGPPGPDECEILDIIM
KMCSCCECTCGPIDILFVLDSSESIGLQNFEIAKDFIIKVIDRLSKDELVKFEPGQSHAG
VVQYSHNQMQEHVDMRSPNVRNAQDFKEAVKKLQWMAGGTFTGEALQYTRDRLLPPTQNN
RIALVITDGRSDTQRDTTPLSVLCGADIQVVSVGIKDVFGFVAGSDQLNVISCQGLSQGR
PGISLVKENYAELLDDGFLKNITAQICIDKKCPDYTCPITFSSPADITILLDSSASVGSH
NFETTKVFAKRLAERFLSAGRADPSQDVRVAVVQYSGQGQQQPGRAALQFLQNYTVLASS
VDSMDFINDATDVNDALSYVTRFYREASSGATKKRVLLFSDGNSQGATAEAIEKAVQEAQ
RAGIEIFVVVVGPQVNEPHIRVLVTGKTAEYDVAFGERHLFRVPNYQALLRGVLYQTVSR
KVALG
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgaggctggcccacgctctgctgcccctgctgctacaagcctgctgggtggccacacag
gacatccagggctccaaagcgattgccttccaagactgccctgtggatctattcttcgtg
ctcgacacctcggagagtgtggccttgaggctgaaaccttatggggccttggtggacaag
gtgaagtccttcactaagcgcttcattgacaacctgagagacaggtactaccggtgtgac
cgcaacctggtttggaatgcgggtgcgctgcactacagtgacgaggtggagatcatccga
gggctcacgcgcatgcccagtggccgcgatgagctcaaggccagcgtggatgcggtcaag
tacttcgggaaaggcacctacaccgactgcgccattaagaaggggctggaggagctgctc
atagggggctcccacctgaaggagaacaagtacttgatcgtggtgaccgacgggcatcct
ctagagggctacaaggaaccatgcgggggtctggaagatgcagtaaatgaggccaaacac
ctgggcatcaaggtcttttctgtggccatcacacctgaccacctggagccacgtctaagt
atcattgccacagaccacacataccggcgcaatttcacggcagctgactgggggcatagc
cgcgatgcagaagaggtcatcagccagaccattgacaccattgtggacatgattaaaaat
aacgtggaacaagtgtgttgttcttttgagtgccaggctgccagaggacctccagggccc
cgaggcgaccctgggtatgagggggagcgaggaaagccaggtcttccgggagagaaggga
gaagctggagaccctggacgacctggggatcttggaccagtcgggtaccagggtatgaag
ggagaaaaggggagccgtggagagaagggttccagaggaccgaaaggttacaagggcgag
aaaggcaagcgcggaatcgacggggtcgacggcatgaagggagagacggggtacccagga
ctaccgggctgcaagggctccccaggatttgatggcattcaaggacccccgggtcccaag
ggtgatgctggtgcctttgggatgaagggagaaaagggtgaagctggagcagacggtgag
gctgggagaccagggaactcagggtcacctggagatgagggtgatcctggagagcctggt
ccccccggagaaaaaggagaggccggtgatgaaggaaatgctggcccagacggtgcccct
ggagagaggggtggccctggtgaaagaggacctcgggggacccctggtgtgagaggacca
aggggagacccgggtgaagctggaccacagggtgaccaaggaagagaggggcccgtcggc
atccctggagactcgggtgaggctggccccattggacctaaaggataccgaggtgatgag
ggtcctccaggtcctgagggcctcagaggagccccaggacctgttggtcctcctggagac
cccggactgatgggtgagagaggtgaggatggaccaccaggaaacggcacggaaggtttc
cccggcttccctgggtatccaggcaacagaggccctcctgggctaaatggcacaaaaggc
taccctggcctcaagggggatgagggtgaagtgggagacccaggagaggataacaacgac
atttcaccccgtggggtcaaaggggcaaagggataccgaggcccagaaggaccccaggga
cctccaggacatgtgggaccacctgggccagatgagtgtgagatcctggatatcatcatg
aaaatgtgctcctgctgtgagtgcacatgtggacccattgacatcctcttcgtgctggac
agctcggagagcattggcctacagaactttgagattgccaaggacttcatcatcaaggtc
attgaccggttgagcaaggatgagctggtcaaatttgagccagggcagtctcacgcgggc
gtggtacagtacagccacaaccagatgcaagagcacgtggacatgcggagccccaacgtc
cgcaacgcccaggacttcaaagaagctgtcaagaagctacaatggatggctggtggcaca
ttcaccggagaagcgctgcagtacacccgggaccggctactcccacccacacagaacaac
cgaattgccctggtcattacggatggacgttctgacactcaacgggacacgacacctctc
agtgtgctctgtggtgcagacattcaggtagtttctgtgggaatcaaggatgtgtttggc
tttgtggcgggctccgaccagctcaatgtcatttcctgccaaggcttatcgcaaggtcgg
ccaggtatctccctggtgaaggagaactatgcagagcttctcgatgacggctttctgaag
aacataacagcccagatctgtatagataagaagtgtccggattatacctgtccaatcaca
ttctcctccccggctgacatcaccatcctgctagacagctcagccagtgtcggcagccac
aacttcgaaaccaccaaggtcttcgccaagcgcctagctgagcgattcctgtcagcaggc
agggcggatccttcccaggatgtgcgggtggccgtggtacagtatagtggccaggggcag
caacagccaggtcgggcggctcttcagttcttacagaattacacagtgctggccagctct
gtggacagcatggatttcatcaacgacgccacagacgtcaacgatgctctgagctacgtg
actcgtttctaccgggaagcctcgtcaggtgccaccaagaagagagtgctgttgttttca
gacggcaactctcagggggccacagcagaggccattgagaaggctgtgcaggaggcccag
cgtgcaggcattgagatctttgtggtggtggtgggaccccaggtgaacgagccccacatc
cgtgtgcttgtcactggcaagactgcagagtacgacgtggcctttggcgagcgccaccta
ttccgtgtaccaaactaccaggccctgctacgtggcgtactctaccagacagtctccagg
aaggtggcactgggctag
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