Mus musculus (house mouse): 12836 Help Entry 12836             CDS       T01002                                  Symbol Col7a1 Name (RefSeq) collagen, type VII, alpha 1   KO K16628   collagen type VII alpha Organism mmu  Mus musculus (house mouse) Pathway mmu04382   Cornified envelope formation mmu04974   Protein digestion and absorption Brite KEGG Orthology (KO) [BR:mmu00001]  09150 Organismal Systems   09154 Digestive system    04974 Protein digestion and absorption     12836 (Col7a1)   09158 Development and regeneration    04382 Cornified envelope formation     12836 (Col7a1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen fn3 VWA Pur_ac_phosph_N VWA_2 Kunitz_BPTI DUF4992 Ig_DSCAM-DSCAML_C Motif Other DBs NCBI-GeneID:  12836 NCBI-ProteinID:  NP_031764 MGI:  88462 Ensembl:  ENSMUSG00000025650 UniProt:  Q63870 Structure PDBPDBj LinkDB All DBs Position 9:108782654..108813943 Genome browser AA seq 2944 aa AA seqDB search MRLRLLVAALCAAEILMGAPEVWAQPRDRVTCTRLYAADIVFLLDGSSSIGRSNFREVRG FLEGLVLPFSGAASAQGVRFATVQYSDDPQTEFGLDTLGSGSDTIRAIRELSYKGGNTRT GAALHHVSDRVFLPRLTRPGVPKVCILITDGKSQDLVDTAAQKLKGQGVKLFAVGIKNAD PEELKRVASQPTSDFFFFVNDFSILRTLLPLISRRVCTTAGGVPVTLPSDDTPSGPRDLV LSEPSSQSLRVQWTAASGPVTGYKVQYTPLTGLGQPLPSERQEVNIPAGETSTRLQGLRP LTDYQVTVVALYANSIGEAVSGTARTTAKEGLELSLQNITSHSLLVAWRRVPGANGYRVT WRDLSGGPTQQQDLSPGQGSVFLDHLEPGTDYEVTVSALFGHSVGPAASLTARTASSVEQ TLHPIILSPTSILLSWNLVPEARGYRLEWRRESGLETPQKVELPPDVTRHQLDGLQPGTE YRLTLYTLLEGREVATPATVVPTGLEQLVSPVMNLQAIELPGQRVRVSWNPVPGATEYRF TVRTTQGVERTLLLPGSQTTFDLDDVRAGLSYTVRVSARVGAQEGDASILTIHRDPEAPL VVPGLRVVASDATRIRVAWGLVPGASGFRISWRTGSGPESSRTLTPDSTVTDILGLQPST SYQVAVSALRGREEGPPVVIVARTDPLGPVRRVHLTQAGSSSVSITWTGVPGATGYRVSW HSGHGPEKSLLVSGDATVAEIDGLEPDTEYIVRVRTHVAGVDGAPASVVVRTAPEPVGSV SKLQILNASSDVLRVTWVGVPGATSYKLAWGRSEGGPMKHRILPGNKESAEIRDLEGGVS YSVRVTALVGDREGAPVSIVITTPPATPALLETLQVVQSGEHSLRLRWEPVPGAPGFRLH WQPEGGQEQSLTLGPESNSYNLVGLEPATKYQVWLTVLGQTGEGPPRKVTAYTEPSHIPS TELRVVDTSIDSVTLTWTPVSGASSYILSWRPLRGTGQEVPRAPQTLPGTSSSHRVTGLE PGISYVFSLTPIQSGVRGSEISVTQTPACSHGPVDVVFLLHATRDNAHNAEAVRRVLERL VSALGPLGPQAAQVGLLTYSHRPSPLFPLNSSHDLGIILRKIRDIPYVDPSGNNLGTAVT TAHRYLLASNAPGRRQQVPGVMVLLVDEPLRGDILSPIREAQTSGLKVMALSLVGADPEQ LRRLAPGTDPIQNFFAVDNGPGLDRAVSDLAVALCQAAVTIEPQTGPCAVHCPKGQKGEP GVTGLQGQAGPPGPPGLPGRTGAPGPQGPPGSTQAKGERGFPGPEGPPGSPGLPGVPGSP GIKGSTGRPGPRGEQGERGPQGPKGEPGEPGQITGGGGPGFPGKKGDPGPSGPPGSRGPV GDPGPRGPPGLPGISVKGDKGDRGERGPPGPGIGASEQGDPGLPGLPGSPGPQGPAGRPG EKGEKGDCEDGGPGLPGQPGPPGEPGLRGAPGMTGPKGDRGLTGTPGEPGVKGERGHPGP VGPQGLPGAAGHPGVEGPEGPPGPTGRRGEKGEPGRPGDPAVGPGGAGAKGEKGEAGLPG PRGASGSKGEQGAPGLALPGDPGPKGDPGDRGPIGLTGRAGPTGDSGPPGEKGEPGRPGS PGPVGPRGRDGEAGEKGDEGIPGEPGLPGKAGERGLRGAPGPRGPVGEKGDQGDPGEDGR NGSPGSSGPKGDRGEPGPPGPPGRLVDAGIESRDKGEPGQEGPRGPKGDPGPPGVSGERG IDGLRGPPGPQGDPGVRGPAGDKGDRGPPGLDGRSGLDGKPGAPGPPGLHGASGKAGDPG RDGLPGLRGEHGPPGPPGPPGVPGKAGDDGKPGLNGKNGDPGDPGEDGRKGEKGDSGAPG REGPDGPKGERGAPGNPGLQGPPGLPGQVGPPGQGFPGVPGITGPKGDRGETGSKGEQGL PGERGLRGEPGSLPNAERLLETAGIKVSALREIVDTWDESSGSFLPVPERRPGPKGDPGD RGPPGKEGLIGFPGERGLKGERGDPGPQGPPGLALGERGPPGPPGLAGEPGKPGIPGLPG RAGGSGEAGRPGERGERGEKGERGDQGRDGLPGLPGPPGPPGPKVAIEEPGPGLAREQGP PGLKGAKGEPGSDGDPGPKGDRGVPGIKGDVGEPGKRGHDGNPGLPGERGVAGPEGKPGL QGPRGTPGPVGSHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLPGPVGAVGLP GPPGPSGLVGPQGSPGLPGQVGETGKPGPPGRDGSSGKDGDRGSPGVPGSPGLPGPVGPK GEPGPVGAPGQVVVGPPGAKGEKGAPGDLAGALLGEPGAKGDRGLPGPRGEKGEAGRAGG PGDPGEDGQKGAPGLKGLKGEPGIGVQGPPGPSGPPGMKGDLGPPGAPGAPGVVGFPGQT GPRGETGQPGPVGERGLAGPPGREGAPGPLGPPGPPGSAGAPGASGLKGDKGDPGAGLPG PRGERGEPGVRGEDGHPGQEGPRGLVGPPGSRGEQGEKGAAGAAGLKGDKGDSAVIEGPP GPRGAKGDMGERGPRGIDGDKGPRGESGNPGDKGSKGEPGDKGSAGSIGVRGLTGPKGEP GAAGIPGEPGAPGKDGIPGFRGDKGDIGFMGPRGLKGEKGIKGTCGRDGERGDKGEAGFP GRPGLAGKKGDMGEPGLPGQSGAPGKEGLIGPKGDRGFDGQSGPKGDQGEKGERGPPGVG GFPGPRGNDGSSGPPGPPGGVGPKGPEGLQGQKGERGPPGESVVGAPGAPGTPGERGEQG RPGPAGPRGEKGEAALTEDDIRDFVRQEMSQHCACQGQFIASGSRPLPGYAADTAGSQLH HVPVLRVSHVEEEGQVPPEDDDDFSEYSVYSVEDYQEPEVPWDGEAEIKGWDQRGSDLCS LPLDEGSCTAYTLRWYHRAVPGGTACHPFVYGGCGGNANRFGTREACERRCPPQGVHSQK TGAA NT seq 8835 nt NT seq  +upstreamnt  +downstreamnt atgaggctgcgactcctggtcgctgcgctctgcgctgcagagatcctgatgggagcgccg gaagtgtgggcccagcccagagatagagtgacctgcacacgcctttatgctgctgacatc gtgttcttactcgatggctcgtcgtccattggccgcagcaactttcgagaagtgcgagga ttcctggaggggctggtgctgcctttctcaggagcagccagtgcacagggcgtccggttt gccacagtgcagtacagtgatgatccacagacagaatttggtctggatacacttggctct gggagtgacaccatccgagccatccgtgagctcagctataaaggtggtaacactcgcacg ggggccgctcttcaccacgtttctgaccgtgtcttcctgcctcgtctaacacgtcctggt gtccccaaggtctgcatcctgatcacagatgggaaatcccaagatttagtggacacagct gcccaaaagctgaaggggcagggagtcaagctgtttgctgtgggaatcaagaatgccgac cctgaggaactgaagcgtgtggcctcacagccaaccagcgatttcttcttcttcgtcaat gacttcagcatcttgaggaccctgttgcctctcatttccaggagggtgtgcacaactgct ggtggtgtgcctgtgaccctgccttctgatgacactccgtctgggccccgggacctggtg ctctctgagccaagtagccaatccttgcgagtacaatggacagcagccagtggccctgtg actggctacaaggttcagtacacacctctgacagggctagggcagccactgccaagtgag cgacaggaggtgaacatcccggctggtgagaccagcacgcgtctccagggtctccggcca ctaacggactaccaagtgactgtggttgccctctatgccaacagcatcggggaggccgtg agtgggacagctcggaccactgccaaggaagggctagaattgagcctccagaacatcaca tcgcacagcctcctggtggcctggaggagggtaccaggtgctaatggctaccgtgtaaca tggcgggacctcagtggtgggccaacccagcagcaggacctgagccctggacaggggtca gtgtttctagatcacttggagcctggcacggactatgaggtgaccgtgagcgccctattt ggccacagcgtggggcctgccgcttctctgactgcccgcaccgcatcttctgttgagcaa accctgcatcccatcatcttgagcccgacatccatcctcctttcctggaacttggtgcct gaggcccgcggctaccgcttggagtggcgtcgtgagagtggcttggaaacaccacagaaa gtggaactgccccctgatgtgacccgccatcagctggatggtttgcagccaggcactgag taccgtctcacgctgtatactctgctggagggccgtgaggtggccactcctgcaaccgtg gttcctacagggctagagcagctggtgagcccggtgatgaatttacaagccatagaacta cctgggcagcgggtgcgagtgtcttggaacccagtccctggggccactgagtaccgtttc actgtacgcaccacccagggggtcgagcggactctattgcttcctgggagccagacaacc tttgacttagatgatgttcgagctgggcttagctacacggtgcgggtgtctgctcgagtg ggtgctcaggagggtgatgccagcatcctaacgatccacagagatccagaagccccactt gttgtcccaggactgcgggttgtcgcatcagatgcaacaagaattagggtggcctgggga cttgtccctggagccagtggatttcggatcagctggaggacaggcagtggtccagagtcc agccggacgctgaccccagactccactgtcacggacatcctggggttgcagcctagcacc tcttatcaagtcgctgtctcagcacttagagggagagaagaggggccccctgtggtcatc gtggctagaactgatccactgggcccagtgaggagagtccacttgactcaggctggcagc tcatctgtcagcatcacctggactggggttcccggtgccacaggatacagggtttcctgg cactcaggccatggtccagagaaatctctgttggtttctggagatgccacggtggctgaa atagatgggctggagccggacacagagtatatagtgcgtgtgagaacccacgtagctggt gtggatggagcccccgcctctgtggttgtgaggactgctcctgagcctgtgggcagtgtg tcgaaactgcaaatccttaatgcttccagtgatgttctacgggtcacttgggtaggagtc cctggggccacatcctataaactggcgtggggacgtagtgaaggtggccctatgaaacac cggatactcccaggaaacaaagagtctgcagagatacgggatctcgaaggaggagtcagc tactccgtgagagtgacggcgcttgttggagaccgagagggtgcaccggtgtccattgtc atcaccacaccgcctgcgaccccagcacttctggagactcttcaagttgtgcagagcggg gagcactccttgaggctgcgatgggaaccagtacccggagcaccaggcttccgcctgcac tggcaacctgagggtggccaggaacagtccctgaccttgggacctgagtctaacagctac aacctggttggtctggagccagcaacaaagtaccaagtatggctgactgtcctgggccag actggagaaggtccccctaggaaggtgactgcatacactgagccctctcacatcccgagc actgaactacgcgtggtggatacctctattgactcagtgactttgacctggaccccagtg tctggggcatccagttatatcttgtcctggcggccgctcagaggaactggccaggaagtg ccgagggccccacagacactgccagggacctcaagctcccacagagtgacagggctggaa cctggtatttcctatgttttctctctgacacctatccagagcggtgtacgaggttctgag atctctgtcacacaaacaccagcgtgttcccatggcccagtggacgtggtgttcctcttg catgccactcgagacaatgctcacaacgcagaggctgtgaggagggtcctggaaaggctg gtgtctgcacttgggcctcttggtccacaggctgctcaggtcggcctgctgacttacagc caccggccctccccactgttcccactgaatagttcccatgatcttggcatcatcttgcga aagatccgtgacatcccctacgtggacccaagtggtaacaacctcggcacagccgtgacc acagctcacagatacctcttagcatccaatgctcctggtcgccgtcagcaagtgccaggc gtgatggtcctgttagtggatgagcctctgagaggggacatactcagccccattcgtgag gcccagacttctgggcttaaggtgatggcactgagtttggtgggagctgacccagagcag ctgcgtcgcttggcaccaggcacggaccccatccagaacttctttgctgtggataatggc ccaggcttggacagagcagtcagtgatctggctgtagccctgtgtcaggcagctgtgacc atagagccgcaaacagggccttgtgctgtgcactgtccaaagggccagaagggggagcct ggagtaacgggactgcaaggacaggctggacctcctggcccccctggtctcccgggcagg accggtgctccaggcccgcaaggtcctcctggaagtacccaggcaaaaggcgagaggggc tttcctggcccagaagggcctccaggcagtcctggcctccctggagttcctgggtctcct ggcattaagggctccacggggcggcctggccctcgtggggaacagggagaacgagggcct caaggtccaaagggggagccgggtgagcctgggcaaatcactggcggtggagggccaggg tttcctggaaagaaaggggaccctggaccttcggggccccctggatctcgtggccctgtg ggggacccaggaccccgtggccccccagggcttcctggaatatcagtgaagggtgacaaa ggtgatcgtggggaacggggtcccccgggaccaggcattggtgccagtgaacagggtgac cctggacttccggggcttcctggaagccctggaccccaaggcccagctggccgacctgga gagaagggagaaaagggtgactgtgaggatggaggtccaggcctcccaggacagcctggg cccccaggggagccgggcctgcggggagctcctggaatgactgggcccaaaggtgatcgg ggactgacggggaccccgggcgagcctggagtaaagggtgaacggggacatcctggtccc gtgggaccccaggggctccccggggctgctggacaccctggagtggagggtcctgagggg ccaccaggacccactggccgccgaggagaaaagggagaacctggtcgccctggggatcct gcagtgggtcctggtggtgctggagccaaaggagaaaagggagaggctgggctccctggg cccagaggagcttctggaagcaaaggagagcagggcgcacctggattggctcttcctgga gatcctggccccaaaggagaccctggagacaggggtcccattggcctcactggaagggca ggacccacaggtgactcagggcctcctggagagaaaggagagcctggtcgacctggttcc ccaggacctgttggcccccgaggaagagatggtgaagctggagagaaaggtgacgagggg atcccgggtgagccaggtttgcctggaaaagcaggtgaacgtggcctccggggggcacct gggcctcgggggcctgtgggtgagaagggggaccagggagatcctggagaagacggacgg aatggcagccctggatcatctggacccaagggtgaccgtggggagcctggtcccccaggt ccccctggacggctggtggatgcaggcattgaatccagagacaagggagagcctggacaa gaaggtccccgaggacccaagggtgaccctgggccccctggagtctctggagaaaggggc attgatgggcttcggggacccccaggcccacagggagaccccggtgttcgaggcccagca ggagacaagggtgatcggggacccccagggctggatggccggagtgggctggatgggaaa cccggagcccctggccccccagggctacatggtgcttcaggcaaagctggggacccgggg agagatggacttccaggccttcgaggagaacatggcccccctggtccccctggccctcct ggagttccgggaaaggcaggcgatgatggcaaaccaggcctgaatgggaaaaacggagac cctggagaccctggagaagatggaaggaagggagaaaagggagattcgggtgcccctgga agagaaggccctgatggccccaagggtgaacgtggagctcctggcaatcctggactccag ggtcctccgggtctcccagggcaggtcggtcctcccggccagggtttccctggtgtccca ggaattacgggtcctaagggtgaccgtggagagactggatccaaaggggaacagggcctt cctggagaacgtggcctacgaggagaacctgggagcttgccaaacgcggagcgtttgctg gaaactgctggcatcaaggtgtcggccctgcgggagatcgtggacacctgggatgagagt tctggcagcttcctaccggtgcctgagcggagacctggccccaagggggaccctggtgac cgaggccctccaggcaaggagggcctcatcggctttcctggagaacgtggactgaaggga gagcgtggagaccctggccctcaggggcctcctggcctggccctgggtgagaggggccca cctggcccacccggccttgcgggggaacccggaaagcctggcattcctggactcccaggc cgggctggtggttcaggggaagcaggaaggccaggagagaggggagaaaggggagagaaa ggagaacgcggggatcagggcagagatggccttcccggcctccctggaccacctggccct cctggccccaaggtggccattgaagagccaggccctggactggctagagagcaaggacct cctggactcaagggtgccaagggggagccaggcagtgatggtgaccctggacctaaagga gacaggggtgtaccaggcatcaaaggcgatgtgggagagcctggaaagaggggtcatgat ggcaacccaggtctcccgggagagcgtggtgtggctgggcctgaagggaagccgggtctt cagggcccaagggggacccctggcccagtgggtagccatggagaccctggaccacctggt gccccgggtcttgctggccctgcgggaccccaggggccttctggcctgaagggggagcct ggagagacaggacctccaggacggggtctgcctggacctgttggagctgtgggactccct ggccctcctggcccttccggcctcgtgggtccacaaggctctccaggtttgcccggacaa gtgggggagacagggaagccaggacctccaggccgtgacggtagcagtggaaaggacgga gatcggggaagtcctggtgtgccggggtcaccaggtctgcccggccctgttggacctaaa ggagaacctgggcctgtgggggctcctggacaggtggtggtcgggccccctggagcaaaa ggcgagaagggagccccgggagaccttgctggagccctgctgggtgagccgggagccaaa ggtgaccgaggactgcctggaccacggggtgaaaagggtgaagctggccgtgcaggagga cctggggaccctggggaagatggtcaaaaaggggctccaggactcaaaggtcttaagggt gagccaggcattggggttcagggcccccctggcccaagtggtcctccaggtatgaaggga gacttgggcccccctggtgcccccggggctcctggtgttgttgggttccctggtcagaca ggacctcgaggagagacgggccagccagggcctgttggagagaggggtctggcaggccct ccagggagagaaggtgccccaggtcccttgggaccacctggaccaccagggtcagcggga gcacctggcgcctctggactcaaaggagacaagggagacccgggagcaggactgccgggg ccccgaggtgagcgtggtgagccaggtgtccggggtgaagatggccaccctggccaggaa ggacctcgtggacttgtggggccccctggcagccggggagagcaaggagagaagggcgct gctggcgctgcagggctcaagggtgacaagggtgactcagctgtgattgagggacctccc gggccacgaggtgccaaaggggatatgggtgaacgagggcctcggggcatagatggtgac aaaggacctcggggagaaagtgggaatcctggtgacaagggttccaaaggagagccaggt gacaaaggctcagctggatcgattggagttcgaggactcacaggacccaagggagagcca ggtgctgcagggatccccggtgagccgggagccccaggaaaggatggaatccctggtttc cgaggagacaaaggagatattggcttcatgggtcccaggggcctcaagggtgaaaaagga ataaagggaacctgtggccgtgacggagagagaggagataagggagaagctggttttcct ggtcgccctgggttggcaggaaagaaaggagacatgggggagcctggtctgccgggtcag tctggggctcctgggaaagaaggcctgatcggtcccaagggtgacagaggctttgatggg cagtcaggacccaagggtgaccaaggcgagaaaggggagagggggcctccaggagttggg ggcttcccaggtcccagaggaaacgatggctctagtggtcccccagggccacctggtggt gttggtcccaagggacccgaagggcttcagggtcagaagggtgagcgaggtccccctgga gagagcgtggtgggggctcctggtgctcctggcacccctggagagagaggagagcaggga cgaccaggacctgctggcccccgtggggagaagggagaagctgcgctgactgaggatgac attcgggactttgtgcgtcaggagatgagtcagcactgtgcctgccagggccagtttatt gcgtctggatcacgacccctccccggttatgctgcggatacagctggttcccagcttcac catgttcctgtgctccgggtctctcatgttgaggaggaaggccaggtgccccctgaagat gacgatgacttctctgagtactctgtgtattctgtggaggactaccaggagcctgaagtt ccatgggatggtgaagccgagattaagggctgggaccagagaggttcagatctctgctcc ctacccttggatgagggctcctgtactgcctataccctgcgctggtaccatcgagctgtg cctggtggcacagcctgtcatccctttgtctatggtggctgcggagggaatgccaatcgt tttggaacccgtgaggcgtgtgagcgccgctgcccaccccaaggggtccacagccagaaa acaggtgctgcctag

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