Mus musculus (house mouse): 13194
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Entry
13194 CDS
T01002
Symbol
Ddb1, 127kDa, p127-Ddb1
Name
(RefSeq) damage specific DNA binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu03420
Nucleotide excision repair
mmu04120
Ubiquitin mediated proteolysis
mmu05161
Hepatitis B
mmu05170
Human immunodeficiency virus 1 infection
mmu05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
13194 (Ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
13194 (Ddb1)
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
13194 (Ddb1)
09172 Infectious disease: viral
05170 Human immunodeficiency virus 1 infection
13194 (Ddb1)
05161 Hepatitis B
13194 (Ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mmu04121
]
13194 (Ddb1)
03400 DNA repair and recombination proteins [BR:
mmu03400
]
13194 (Ddb1)
Ubiquitin system [BR:
mmu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
13194 (Ddb1)
DNA repair and recombination proteins [BR:
mmu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
13194 (Ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
13194 (Ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Beta_propel
Motif
Other DBs
NCBI-GeneID:
13194
NCBI-ProteinID:
NP_056550
MGI:
1202384
Ensembl:
ENSMUSG00000024740
UniProt:
Q3U1J4
LinkDB
All DBs
Position
19:10582961..10607186
Genome browser
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPGRE
TDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPQGKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVAC
LDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDSSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGEA
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaactacgtcgtaacggcgcagaagcctactgcagtgaacggctgtgtgacc
ggacactttacttcagcggaagatctgaacctgttgattgctaaaaacacaagattagag
atctatgtggtcactgcggagggtcttcggccagtcaaagaggtgggaatgtacgggaag
attgcagtcatggagctcttcaggcccaagggggagagcaaagacctgctgttcatcttg
actgctaaatacaatgcctgtatcttggagtataagcagagtggcgaaagcattgacatc
attacaagagcccatggcaatgtccaggaccgcattggtcgcccctcggagactggcatc
attggcatcattgaccctgagtgccgtatgattggccttcgactctacgatggccttttc
aaggtcattccactagaccgagacaataaagagctcaaggcctttaacatccgcctagag
gaactgcacgtcattgatgtcaagttcctgtatggttgtcaagcacctaccatttgcttt
gtctaccaggatcctcaggggcggcatgtgaaaacctatgaggtgtctcttcgagagaag
gagttcaacaagggcccttggaaacaggagaatgtagaagccgaagcttcaatggtgata
gcagtcccagagccttttggaggtgccatcatcattggacaggaatcaatcacctatcat
aacggtgataaatacctggcaattgctcctcctatcattaagcaaagcactattgtgtgc
cataaccgggtggatcctaatggctcgcggtaccttctgggagatatggagggacggctt
ttcatgctgctcttagagaaggaggagcagatggatggcactgtcaccctcaaggacctt
cgagtggaactcctcggagagacctccattgctgagtgcctaacttatcttgataatggt
gttgtatttgtcgggtctcgcctaggtgactcccagctcgtaaagctcaatgtcgacagc
aacgaacaaggctcctatgtagtggccatggaaacctttaccaatttaggacccattgtg
gatatgtgtgtggtggacctggagaggcagggacagggtcagctggtcacttgctctgga
gctttcaaggaaggttccttgcggatcatccggaacggcattggaatccatgagcatgcc
agcattgacttaccaggcatcaaaggtttatggcctctgcgctctgaccccggtcgggag
acggatgacactttggtgctctcttttgtgggccagacaagagttctcatgctaaacgga
gaggaagtggaagagacagaactgatgggctttgtggacgatcagcagactttcttttgt
ggcaacgtggctcatcagcaacttatccagatcacctcagcatctgtgaggttggtgtct
caagagcccaaagctttggtcagcgagtggaaagagcctcagggcaagaacatcagtgtg
gcctcctgtaacagcagccaggtggttgttgccgtgggaagggcactatattaccttcag
atccaccctcaggagctccggcaaatcagccacacagagatggaacatgaagtggcatgc
ttggatatcaccccattaggggacagcaatggcctctccccactttgtgccattggactt
tggacagacatctcagctcgtatcctgaagctcccatcctttgaactactacacaaggag
atgctgggtggagagatcattcctcgatccatcctgatgaccacttttgagagtagccac
tacctcctttgtgccttgggagatggggctcttttctactttgggctcaacatcgagaca
ggtttactgagtgaccgtaaaaaggtgactttgggcacccagcccacggtgttgaggaca
ttccgttctctttctaccaccaacgtctttgcttgctctgaccggcccactgtcatctat
agcagcaatcacaagttggtcttctccaatgtcaacctcaaggaggtgaactatatgtgt
cctctcaactcagatggctatcctgacagtctggcattggccaataacagcactctcacc
attggcaccatcgatgagatccagaagctccatattcgcacagttcccctctatgagtct
cccaggaagatctgctatcaggaagtgtctcagtgctttggggtcctttccagccgcatt
gaagtccaagatagcagtggaggcactactgctttgaggcccagtgccagcacccaggcc
ctgtccagcagcgtcagctccagcaaacttttctccagcagtacggctcctcacgagacc
tcctttggagaagaagtggaggtgcacaacctcctcatcattgaccagcacacctttgaa
gtgcttcacgcccatcagtttctacaaaacgagtatgccctcagcctggtctcctgcaag
ttgggtaaagaccccaacacttacttcattgtgggcacagccatggtatatcctgaagag
gcagagcccaagcagggtcgtattgtggtcttccagtattcagatggaaaactacagact
gtggctgaaaaggaagtaaaaggagctgtgtactctatggtggagtttaatgggaagctg
cttgccagcatcaatagcacggtgcggctctatgagtggaccacagaaaaggagcttcgc
actgagtgtaatcactacaacaacatcatggccctgtacctgaagaccaagggcgacttc
atcctggtgggcgacctcatgcgctcagtgctgctgcttgcctacaagcctatggaagga
aactttgaagagattgcccgagactttaatcccaactggatgagtgcagtggagatcttg
gatgatgacaattttctgggagctgaaaatgcctttaacttgtttgtgtgtcagaaggac
agtgctgccaccactgatgaggagcggcagcacctacaggaggttggtctcttccacctg
ggcgagtttgtcaatgtgttctgccatggctccctagttatgcagaatctgggcgaggct
tctacccctacacagggctcggtgctctttggcacagtcaacggcatgatagggctggtg
acctcgctgtcagagagctggtataacctcctgttggacatgcagaaccgactcaataag
gtcatcaaaagcgtgggcaagattgagcactccttctggagatcctttcacactgagcga
aagacagaaccagccacaggcttcatcgatggtgatctgattgaaagtttcctagatatc
agccgccctaagatgcaggaggttgtggcaaacttgcagtatgatgatggcagtggtatg
aagcgggaggcaactgcagatgacctcatcaaagtcgtggaggagctaactcggatccat
tag
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integrated database retrieval system
