Mus musculus (house mouse): 16881
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Entry
16881 CDS
T01002
Symbol
Lig1, LigI
Name
(RefSeq) ligase I, DNA, ATP-dependent
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu03030
DNA replication
mmu03410
Base excision repair
mmu03420
Nucleotide excision repair
mmu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
16881 (Lig1)
03410 Base excision repair
16881 (Lig1)
03420 Nucleotide excision repair
16881 (Lig1)
03430 Mismatch repair
16881 (Lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmu03032
]
16881 (Lig1)
03400 DNA repair and recombination proteins [BR:
mmu03400
]
16881 (Lig1)
Enzymes [BR:
mmu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
16881 (Lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
16881 (Lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
16881 (Lig1)
DNA replication proteins [BR:
mmu03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
16881 (Lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
16881 (Lig1)
DNA repair and recombination proteins [BR:
mmu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
16881 (Lig1)
NER (nucleotide excision repair)
Other NER factors
16881 (Lig1)
MMR (mismatch excision repair)
Other MMR factors
16881 (Lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
PucR
DDR
Motif
Other DBs
NCBI-GeneID:
16881
NCBI-ProteinID:
NP_034845
MGI:
101789
Ensembl:
ENSMUSG00000056394
UniProt:
P37913
Q3U4X8
Q8R055
Q3TSU8
LinkDB
All DBs
Position
7:13011101..13045351
Genome browser
AA seq
916 aa
AA seq
DB search
MQRSIMSFFQPTKEGKAKKPEKETPSSIREKEPPPKVALKERNQVVPESDSPVKRTGRKV
AQVLSCEGEDEDEAPGTPKVQKPVSDSEQSSPPSPDTCPENSPVFNCSSPMDISPSGFPK
RRTARKQLPKRTIQDTLEEQNEDKTKTAKKRKKEEETPKESLAEAEDVKQKEEKEGDQLI
VPSEPTKSPESVTLTKTENIPVCKAGVKLKPQEEEQSKPPARGAKTLSSFFTPRKPAVKT
EVKQEESGTLRKEETKGTLDPANYNPSKNNYHPIEDACWKHGQKVPFLAVARTFEKIEEV
SARLKMVETLSNLLRSVVALSPPDLLPVLYLSLNRLGPPQQGLELGVGDGVLLKAVAQAT
GRQLESIRAEVAEKGDVGLVAENSRSTQRLMLPPPPLTISGVFTKFCDIARLTGSASMAK
KMDIIKGLFVACRHSEARYIARSLSGRLRLGLAEQSVLAALAQAVSLTPPGQEFPTAVVD
AGKGKTAEARKMWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGVPLKP
MLAHPTRGVSEVLKRFEEVDFTCEYKYDGQRAQIHVLEGGEVKIFSRNQEDNTGKYPDII
SRIPKIKHPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDL
IYLNGESLVRQPLSRRRQLLRENFVETEGEFVFTTSLDTKDTEQIAEFLEQSVKDSCEGL
MVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLAA
YDEESEELQAICKLGTGFSDEELEEHHQSLQALVLPTPRPYVRIDGAVAPDHWLDPSIVW
EVKCADLSLSPIYPAARGLVDKEKGISLRFPRFIRVRKDKQPEQATTSNQVASLYRKQSQ
IQNQQSSDLDSDVEDY
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgcagagaagtattatgtcattttttcaacccacaaaagaaggtaaagcgaagaagcca
gagaaggagacacccagcagcatcagagagaaggaaccccctccaaaggtggcgctgaag
gagaggaatcaagtggtgcccgagagtgattctccagtgaagaggacaggaaggaaggta
gcccaggttctgagctgtgaaggggaggacgaagatgaagcccctggcacccccaaagtc
cagaagcctgtgtcagactctgaacagagctctcctcccagccctgacacatgtcctgag
aacagtcctgtcttcaactgcagctcccccatggacatctccccatcaggattcccaaag
cgtcgaactgcgcggaagcagctccccaaacggacaattcaagacactcttgaggagcag
aatgaggacaaaaccaaaacagctaagaaaaggaagaaagaagaagagaccccaaaagaa
agcctcgcagaggctgaagacgtaaaacagaaggaagaaaaggagggggaccagctcata
gtcccctctgagcccacaaagtcccctgagtcagtaaccctgacaaagacagagaacatt
ccagtgtgtaaggcaggagtgaaactgaagcctcaggaagaggaacagagcaaacctcct
gctagaggtgccaagacactgagcagtttcttcacaccccgaaaaccagcagtgaaaact
gaagtcaaacaagaagagtcaggcactctaaggaaggaagagaccaagggaaccctggat
ccagcaaattataatccttccaagaataactatcatcccattgaagatgcctgctggaaa
catggccagaaggtcccttttctcgccgtggcccggacatttgagaagattgaggaggtt
tctgctaggctcaagatggtggagacattgagcaacctgctgcgctccgtggtggccctg
tcccctccagacttgctccctgttctctatctcagcctcaaccgcctcgggccacctcag
cagggactagagctgggtgttggtgatggtgtcctcctcaaggccgttgcccaggccaca
ggtcgtcagctggagtccatccgggctgaggtagctgagaagggggatgtggggctggtg
gccgagaacagccgcagcactcagagactcatgctgcctccacctccacttactatttct
ggagtcttcaccaaattctgtgacattgcccggctcactggcagtgcttccatggccaag
aagatggacattatcaagggcctttttgttgcctgccgccactcagaagccaggtacatt
gccaggtccctaagcgggcggctgcgccttggcctagctgagcagtcggtactggctgct
cttgcccaggctgtgagcctcacaccccctggccaagaatttcccacggcggtggtggat
gctgggaagggcaagacagcagaggccagaaagatgtggttggaagaacaaggcatgatc
ttgaagcagaccttctgtgaggttcctgacctggatcgaatcatccctgtgctgctggaa
catggcctggaacgtctcccagagcactgcaagctgagcccaggggtccctcttaaacca
atgctggctcatcccactcggggtgtcagtgaggtcctaaaacgctttgaggaggtcgac
ttcacctgtgaatataaatacgatgggcagcgagcacagatacatgttctggaaggtgga
gaagtgaagatcttcagcaggaaccaggaagacaacacaggaaagtatcctgacattatc
agccgcatccccaagattaaacacccctcagtcacatctttcattctggacactgaggct
gtggcctgggaccgggaaaagaagcagatccaaccattccaagtactcaccacgcgcaag
cgcaaggaggttgatgcatcggagatacaggtgcaagtgtgtctgtatgcttttgacctc
atctacctcaacggagagtccctggttcgccagcccctgtctcgacgccggcagctgctc
cgtgagaacttcgtggagacagagggtgagtttgtcttcaccacctctttggacaccaag
gacaccgagcagattgctgagttcttggagcagtcagtgaaggactcctgtgagggcctg
atggtgaagaccttggatgttgatgccacttatgagattgccaagaggtcacacaactgg
ctcaagctgaagaaggactaccttgacggtgtgggtgacactctggaccttgtggtgatt
ggtgcctacctgggccgggggaagcgggctggccggtatggaggcttcctgttggctgcc
tacgatgaggagagtgaagagcttcaggctatatgcaagctgggaactggattcagcgat
gaggagctggaggaacaccaccagagcctgcaggccctggtattgcctaccccacgcccc
tatgtgaggattgatggggcagtggccccagaccattggctggacccaagcattgtgtgg
gaggtgaagtgtgctgatctttccctgtcccccatctaccctgctgcacggggcctggtg
gacaaagaaaaagggatctctcttcgttttcctcggttcattcgtgtccgtaaagacaag
cagccagagcaggccactaccagtaaccaggttgcctctttgtaccggaagcagagtcag
attcagaaccaacaaagctcagacttggactccgacgttgaagactattaa
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