Mus musculus (house mouse): 19704
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Entry
19704 CDS
T01002
Symbol
Upf1, B430202H16Rik, NORF1, PNORF-1, Rent1, Upflp
Name
(RefSeq) UPF1 RNA helicase and ATPase
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu03013
Nucleocytoplasmic transport
mmu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
19704 (Upf1)
03015 mRNA surveillance pathway
19704 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmu03019
]
19704 (Upf1)
Enzymes [BR:
mmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
19704 (Upf1)
5.6.2.5 RNA 5'-3' helicase
19704 (Upf1)
Messenger RNA biogenesis [BR:
mmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
19704 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
19704 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
19704
NCBI-ProteinID:
NP_001116301
MGI:
107995
Ensembl:
ENSMUSG00000058301
UniProt:
Q9EPU0
LinkDB
All DBs
Position
8:complement(70784143..70806418)
Genome browser
AA seq
1124 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGAGGPGGA
GAGGAAGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSY
CGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYN
CGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKI
PSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNI
FGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAFFTLPKTDSGNEDLVIIWLRDM
RLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFV
WKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHS
QVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKI
HQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKR
YRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGA
KQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSN
IFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVE
KITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREK
DFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLSYYKE
QKALVEGPLNNLRESLMQFSKPRKLVNTVNPGARFMTTAMYDAREAIIPGSVYDRSSQGR
PSNMYFQTHDQISMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKTK
TGRGGRQKNRFGLPGPSQTTLPNSQASQDVASQPFSQGALTQGYVSMSQPSQMSQPGLSQ
PELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacggccccagctcgcaaacactcaccttcttggacactgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgaattcaccgacttcaccctt
cccagccagacgcagacgccccccggcggccccggcggcgcgggaggcccgggcggagcg
ggcgcaggcggcgcggccggccagctcgacgcacaagttggaccagagggcatcttgcaa
aatggggctgtggatgacagtgtggccaagaccagccagctgctagctgagctgaacttc
gaggaagatgaagaggacacatactacactaaggacctcccagtccacgcctgcagttac
tgtggaatccatgatcctgcctgcgtggtttactgtaataccagcaagaagtggttctgc
aatggccgaggaaatacttctggcagccacattgtgaatcacctcgtgagggcaaaatgc
aaggaagtgacgctgcacaaggacgggcctctgggcgagaccgtgctggagtgctacaac
tgtggctgccgcaacgtcttcctgctgggcttcatccctgcgaaggccgactctgtggtg
gtgctgttgtgcaggcagccctgtgccagccagagcagcctgaaggacatcaactgggac
agctcacagtggcagcccctaatccaggaccggtgctttctgtcatggctggtcaagatt
ccctctgagcaggagcagctgcgagcacggcagatcacggcacagcagatcaacaagctg
gaagagctctggaaggaaaatccttcagccactctggaggacctggagaagccaggcgta
gacgaggagccacagcacgtgctcctgcgttacgaggatgcttaccagtaccagaacatc
ttcgggccactggtcaagctggaggctgactatgacaagaagttgaaggagtcacagact
caagataacatcacggtcaggtgggacctgggccttaacaagaagagaatcgccttcttc
actttgcccaagactgactctggtaatgaggatttagtcataatttggttaagagacatg
cggctcatgcagggtgatgagatctgtctgcggtacaaaggggatctggcgcccctgtgg
aaggggattggccacgtcatcaaggttcctgataattatggtgatgagattgctattgag
ctccgcagcagcgtgggtgcccctgtggaagtgacccacaacttccaagtggattttgtg
tggaagtcaacctcttttgataggatgcagagtgcactgaagaccttcgctgtggacgag
acctctgtgtcagggtatatttaccacaagctgctgggccacgaggtggaggatgtggtc
atcaagtgccagctgccaaagcgcttcacagctcaggggctccctgacctcaaccactct
caggtgtatgctgtgaagaccgtgctgcagagaccactcagcctcatccagggccctcca
ggcacaggcaagactgtgacatcagccactattgtctaccaccttgctcggcagggcaat
gggcctgtactggtttgtgctccaagtaacatcgctgtggaccagctcacagagaagatc
caccagacaggactgaaggtcgtacgcctctgtgccaagagccgtgaggccattgactcc
ccagtgtccttcctggctttgcacaaccagatcaggaacatggacagcatgcctgagctg
cagaagctgcagcagctaaaggatgagacaggcgagctgtcatctgcagatgagaagcgg
taccgggcgcttaagcgcacagctgagagagaacttctcatgaatgcagatgtcatatgc
tgcacatgtgtgggtgctggtgacccgaggctggccaagatgcagttccgttccatcctc
attgacgagagcacccaggccactgagcctgagtgcatggtgcctgtagtccttggggcc
aagcagctaatcctcgtcggtgaccactgccagctgggcccagtggtgatgtgcaagaag
gcagccaaggccggactgtcacaatcgctcttcgagcgcttggtggtgctgggcatccgg
cccatccgcctgcaggtgcaataccgcatgcaccctgcactcagcgcctttccgtccaac
atcttctacgagggctcattgcagaatggcgtcactgcagcggatcgtgtcaaaaaaggc
tttgacttccagtggccacaacctgacaagcctatgttcttctacgtgacgcagggccag
gaggagattgccagctctggcacatcctacctcaacaggacggaggcagccaatgtggag
aagataactacgaagctgttgaaggcaggtgcaaagcctgaccagatcggcatcatcacc
ccctacgagggccagcgctcttacttggtgcagtacatgcagttcagcggctccctgcac
acaaagctctaccaggaagtggaaattgccagtgtggacgccttccagggccgggagaag
gacttcatcattctgtcctgcgtgcgcgccaatgaacatcagggcattgggttcctaaac
gacccccggcgtctgaatgtggctctcaccagagcaagatatggcgtgatcattgtgggt
aacccaaaggccctgtcgaagcagcccctgtggaatcacctgctgagctactacaaggaa
cagaaggcgctagtggaagggccgctcaacaacctacgtgagagcctcatgcagttcagc
aagcctcgcaaacttgtcaacactgtcaacccgggtgcccgcttcatgactactgccatg
tacgatgcccgtgaggccatcatccccgggtctgtctatgaccgcagcagccagggccgg
ccctcgaacatgtacttccagacccatgaccagattagtatgatcagcgcaggccccagc
cacgtggctgccatgaacatccctattcccttcaacttggtcatgcctcccatgccgcca
cctggctacttcggacaggccaacgggccggcagctggtcggggcaccccaaaaaccaag
actggccgtgggggccgccagaagaaccgctttgggcttcctgggcccagccagaccacc
cttcccaacagccaggccagccaggacgtggcctcccagcccttttcacagggtgccctc
acacagggttacgtgtccatgagccagccctctcagatgagccagcctggcctctcccag
ccagaactgtcccaggacagctacctcggtgatgagtttaaatcacagattgacgtggca
ctctcacaagactccacataccagggagagcgggcataccagcacggcggggtcaccggg
ctgtcccagtactag
DBGET
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