Mus musculus (house mouse): 20265
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Entry
20265 CDS
T01002
Symbol
Scn1a, B230332M13, Nav1.1
Name
(RefSeq) sodium channel, voltage-gated, type I, alpha
KO
K04833
voltage-gated sodium channel type I alpha
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu04728
Dopaminergic synapse
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09150 Organismal Systems
09156 Nervous system
04728 Dopaminergic synapse
20265 (Scn1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mmu04040
]
20265 (Scn1a)
Ion channels [BR:
mmu04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
20265 (Scn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
Neur_chan_memb
Zip
FUT8_N_cat
Pns11_12
PFF1_TM
FraC
New_glue
Motif
Other DBs
NCBI-GeneID:
20265
NCBI-ProteinID:
NP_001300926
MGI:
98246
Ensembl:
ENSMUSG00000064329
UniProt:
A2APX8
LinkDB
All DBs
Position
2:complement(66101125..66271181)
Genome browser
AA seq
2009 aa
AA seq
DB search
MEQTVLVPPGPDSFNFFTRESLAAIERRIAEEKAKNPKPDKKDDDENGPKPNSDLEAGKN
LPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVQWPPTNASLEEHSIEKNITMDY
NGTLVNETVFEFDWKSYIQDSRYHYFLEGVLDALLCGNSSDAGQCPEGYMCVKAGRNPNY
GYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA
VVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQQAAATTASEHSREPSAAGRLS
DSSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKDDDEFHKSESEDSIRRKGFRFSIEG
NRLTYEKRYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFED
NESRRDSLFVPRRHGERRNSNLSQTSRSSRMLAVFPANGKMHSTVDCNGVVSLVGGPSVP
TSPVGQLLPEVIIDKPATDDNGTTTETEMRKRRSSSFHVSMDFLEDPSQRQRAMSIASIL
TNTVEELEESRQKCPPCWYKFSNIFLIWDCSPYWLKVKHIVNLVVMDPFVDLAITICIVL
NTLFMAMEHYPMTEHFNHVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIV
TLSLVELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAII
VFIFAVVGMQLFGKSYKDCVCKIATDCKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCM
EVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMH
KGIAYVKRKIYEFIQQSFVKKQKILDEIKPLDDLNNRKDNCISNHTTEIGKDLDCLKDVN
GTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEE
SKEKLNESSSSSEGSTVDIGAPAEEQPVIEPEETLEPEACFTEGCVQRFKCCQISVEEGR
GKQWWNLRRTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFT
YIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRA
LRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTT
TGDIFEISEVNNHSDCLKLIERNETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYA
AVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFM
TEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTRQVFDISIMILICLNMVTMMV
ETDDQSDYVTSILSRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMF
LAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLV
MFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPD
CDPNKVNPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPL
SEDDFEMFYEVWEKFDPDATQFMEFEKLSQFAAALEPPLNLPQPNKLQLIAMDLPMVSGD
RIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSAV
IIQRAYRRHLLKRTVKQASFTYNKNKLKGGANLLVKEDMLIDRINENSITEKTDLTMSTA
ACPPSYDRVTKPIVEKHEQEGKDEKAKGK
NT seq
6030 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaacagtgcttgtaccaccaggacctgacagcttcaacttcttcaccagagaa
tcccttgcagctattgaaaggcgcattgcagaagagaaggctaagaatcccaagccagac
aaaaaagatgatgatgaaaatggcccaaagccaaacagtgacttggaagctgggaagaac
cttccatttatctatggagacattcctccagagatggtgtcggagcctctggaggacctg
gacccctactatatcaataagaagacttttatagtattgaataaagggaaggccatcttc
cggttcagtgccacctccgccctgtacattttaacacccttcaatcctcttaggaaaata
gctattaagattttggtacactcattattcagcatgttaatcatgtgcactattttgaca
aactgtgtatttatgacaatgagtaaccctcccgactggacaaagaatgtggagtacacc
ttcacaggaatatatacttttgaatcactaataaaaattattgcaaggggcttctgttta
gaagattttactttccttcgcgacccatggaactggctggacttcactgtcattacattc
gcatatgtgacggagtttgtggacctgggcaatgtctcagcattgagaacattcagagtt
cttcgagcattgaaaactatttcagtcattccaggcctgaagaccatcgtgggggccctg
atccagtcggtgaagaagctgtctgacgtcatgatactcactgtgttctgtctcagtgtg
ttcgcactcatcgggttgcagctcttcatgggcaacctgaggaataaatgtgtacagtgg
cctcccaccaacgcttcccttgaggaacatagcatagagaagaatataactatggattac
aatggcacacttgtaaatgaaaccgtgttcgagtttgactggaaatcatacattcaagac
tcaagatatcattatttcctggagggtgttttagatgcactgctgtgtggaaatagctct
gatgcaggccaatgtccagaaggatatatgtgtgtaaaagctggtagaaaccctaattat
ggttacacaagctttgataccttcagttgggcatttttgtccctgtttcgactgatgact
caggacttctgggaaaatctataccaactgacattgcgtgctgctggcaaaacctacatg
atattttttgtgctggtcattttcttgggctcattctacctgataaacttgatcctggct
gtggtggccatggcctatgaggagcagaatcaggccacactggaggaggctgaacagaaa
gaggcagaatttcagcagatgttggagcaacttaagaagcagcaagaggctgcacagcag
gcagcggctacaacagcctcagaacattccagggagcccagtgcagcaggcaggctctca
gatagctcttcagaagcctctaagttgagttcgaagagtgctaaagaaagacgaaatcgg
aggaaaaaaaggaaacagaaagagcagtctggaggagaagagaaagatgatgatgaattc
cacaagtctgagtctgaagacagcatcaggaggaaggggtttcgcttctccatagaaggg
aatagactgacatatgaaaagaggtactcttccccgcatcagtctctgttaagcattcgt
ggttccctgttctccccaagacgcaatagcagaacaagtcttttcagctttagagggcga
gccaaggatgtggggtctgagaatgactttgctgatgatgaacacagcacctttgaggat
aatgagagccgtagagactcactgttcgttccccgaagacacggagagcgacgcaacagt
aacctgagccagaccagcaggtcctcccgaatgctggcggtgtttccagccaatgggaag
atgcacagcacggtggattgcaatggtgtggtttccttggttggtggaccctcagttccc
acatcgccagttggacagcttctgccagaggtgataatagataagccagctactgatgac
aatggaacaaccactgaaactgagatgagaaagaggaggtcgagctctttccatgtttcc
atggactttctagaagatccttcccagaggcaaagggcaatgagcatagccagcatctta
acaaatacagtagaagaactagaagaatccaggcagaaatgtccaccctgttggtataaa
ttttccaacatattcttaatttgggactgttctccatattggctgaaagttaaacatatt
gtcaacctggtggtgatggacccatttgttgatctggccattaccatctgcattgtgtta
aatacgctcttcatggctatggagcactaccccatgactgaacatttcaaccatgttctt
acagtgggaaacttggtcttcactgggattttcacagcagaaatgttcctgaaaatcatc
gcaatggatccttactattacttccaagaaggctggaatatctttgatggtttcattgtg
acactcagcctggtagaacttggccttgccaatgtggaaggattgtcagttctccgttca
tttcgactgctccgagtgttcaagttggcaaagtcttggcccacactgaatatgctcatt
aagatcattggtaactcggtgggagcactgggcaacctgactctggtgttggccatcatt
gtctttatttttgccgtggttggcatgcagctgtttggaaaaagttacaaagattgtgtc
tgcaaaattgccactgactgcaaactcccacgttggcacatgaacgacttcttccactcg
ttcctgatcgtgttccgcgtgctgtgtggggagtggatagagaccatgtgggactgcatg
gaggtggcaggacaagctatgtgccttactgtcttcatgatggtcatggtgattgggaac
cttgtggtcttgaacctctttctggccttgcttctgagctcatttagtgcagacaacctt
gcagccactgatgatgacaatgagatgaacaacctgcagattgctgtggacaggatgcac
aaaggaatagcttatgtaaaaagaaaaatatatgaattcattcaacaatcctttgttaag
aaacagaagattctagatgaaattaagccacttgatgatctaaacaacagaaaagacaat
tgtatctctaaccacacaacagaaattgggaaagatctggactgtctgaaagatgtgaat
ggaaccacaagtggcatagggacgggcagcagtgtggagaagtacatcattgatgagagt
gattatatgtcattcataaacaaccccagcctcactgtgactgtgcccattgctgtggga
gagtctgactttgagaacttaaacacagaagactttagcagtgaatcagatctagaagaa
agcaaagagaaactcaacgaaagcagtagctcctcagagggaagcacagtagacattggg
gcgcctgcagaggaacagcctgtcattgaaccagaagaaacccttgagcccgaagcttgc
ttcactgaaggctgtgtccagagattcaagtgctgtcaaatcagcgtggaagaaggaaga
gggaaacagtggtggaacctacggaggacgtgcttccgaatagttgaacacaactggttt
gagaccttcattgtgttcatgattctcctgagtagtggtgccctggcctttgaggatata
tatattgatcagcgaaagacgatcaaaaccatgctggagtatgctgacaaagtcttcact
tacattttcatcctggagatgctcctcaaatgggtggcctatggctatcaaacatacttc
accaatgcctggtgttggctagacttcttaattgttgatgtttcattggtcagtttaaca
gcaaatgccttgggttactctgaactcggggccatcaaatccctaaggacactaagagct
ctgagacccctaagagccttatcacgatttgaagggatgagggtggttgtgaatgccctg
ttaggagcaattccatccatcatgaatgtgcttctggtttgccttatattctggctaatt
ttcagcatcatgggcgtaaatttgtttgctggcaaattctaccactgtgttaacaccaca
actggtgacatatttgagatcagcgaagtcaataatcattctgattgcctaaaactaata
gaaagaaatgagaccgcccggtggaaaaatgtgaaagtaaactttgataatgtaggattt
gggtatctttctttgcttcaagttgccacatttaagggctggatggatatcatgtatgct
gcagttgattccagaaatgttgaactacagcctaagtatgaggaaagcctgtacatgtat
ttgtacttcgtcatcttcatcatcttcgggtccttctttaccctgaacctgtttattggt
gtcattatcgacaatttcaaccagcaaaagaagaagtttggaggtcaagacatctttatg
acagaagaacagaagaaatactataatgcaatgaagaaattaggatcaaaaaagccacaa
aagcctatccctcgacctggaaacaaatttcaaggaatggtttttgactttgtaaccaga
caagtgtttgatatcagcatcatgatcctcatctgtctgaacatggtgaccatgatggtg
gaaacggatgaccagagcgattatgtgacaagcattttgtcacgcatcaacctggtgttc
atcgtcctgttcaccggcgagtgtgtgctcaagctcatctcgctccgccattattatttc
accattggatggaacattttcgattttgtggtggtcatcctctccattgtagggatgttt
cttgcggagctaatagaaaagtattttgtgtctcctaccctgttccgagtcatccgcctg
gccaggattggacgaatcctacgcctgatcaaaggtgccaaggggatccgcacgctgctc
tttgctctgatgatgtcccttcctgcgctgtttaacatcggcctcctgctttttctcgtc
atgttcatctacgccatctttgggatgtccaactttgcctatgttaagagggaagttggg
attgatgacatgttcaactttgagaccttcggcaacagcatgatctgcctgttccaaatc
accacctctgcgggctgggatggactgctggcccccatcctcaacagcaaaccccctgac
tgtgaccctaataaagttaaccctggaagctcggtgaagggagactgtgggaacccatct
gtggggattttcttttttgtcagctacatcatcatatccttcctggttgtggtgaacatg
tacattgctgtcatcctggagaacttcagcgttgccacagaagaaagtgcagagcctctg
agtgaggacgactttgagatgttctacgaggtctgggagaagttcgaccctgacgccacc
cagttcatggaatttgaaaaattatctcagtttgcagctgctctagaaccccctctcaat
ttgccacaaccaaacaaacttcagctcattgccatggacctgcccatggtgagtggagac
cgcatccactgcctggacatcttatttgcttttacaaagcgggtgttgggtgagagtgga
gagatggatgctcttcgaatccagatggaagagcggttcatggcttccaacccctccaag
gtctcttatcagcccatcactactacattaaaacgcaaacaagaggaggtgtcagctgtt
atcattcagcgagcttataggcgccaccttttgaagcgaacagtaaaacaagcttcattc
acatacaataagaacaaactcaaaggtggggctaatcttcttgtaaaagaagacatgctc
attgacagaataaacgaaaactctattacggagaaaactgacctgacaatgtccacagca
gcttgtccgccctcctacgatcgggtgacaaagccaatcgtggagaaacacgagcaggaa
gggaaggatgaaaaagccaaagggaaatga
DBGET
integrated database retrieval system
