Mus musculus (house mouse): 20587
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Entry
20587 CDS
T01002
Symbol
Smarcb1, Baf47, Ini1, SNF5/INI1, Snf5
Name
(RefSeq) SWI/SNF related BAF chromatin remodeling complex subunit B1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu03082
ATP-dependent chromatin remodeling
mmu03250
Viral life cycle - HIV-1
mmu04714
Thermogenesis
mmu05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
20587 (Smarcb1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
20587 (Smarcb1)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
20587 (Smarcb1)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
20587 (Smarcb1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mmu01009
]
20587 (Smarcb1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmu03021
]
20587 (Smarcb1)
03036 Chromosome and associated proteins [BR:
mmu03036
]
20587 (Smarcb1)
Protein phosphatases and associated proteins [BR:
mmu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
20587 (Smarcb1)
Transcription machinery [BR:
mmu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
20587 (Smarcb1)
SWI/SNF complex
20587 (Smarcb1)
Chromosome and associated proteins [BR:
mmu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
20587 (Smarcb1)
PBAF complex
20587 (Smarcb1)
SWI/SNF complex
20587 (Smarcb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
20587
NCBI-ProteinID:
NP_035548
MGI:
1328366
Ensembl:
ENSMUSG00000000902
UniProt:
Q9Z0H3
Q3UDA4
Q6ZWP4
LinkDB
All DBs
Position
10:complement(75732603..75757448)
Genome browser
AA seq
385 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
MEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgttgagcaagaccttcgggcagaagcccgtcaagtttcagctggag
gacgacggggagttctacatgatcggctccgaggtgggaaactacctgcgtatgttccga
ggttctctgtacaagagatacccctcactctggcggcgactagccactgtggaagaaagg
aagaaaatagtggcatcgtcacatggtaaaaaaacaaaacctaacactaaggatcatgga
tataccaccctggccaccagcgtgacactcctgaaagcctcagaggtagaagagatcctg
gatggcaatgacgagaagtacaaggctgtgtccatcagcacagagcccccgacctacctc
agggagcagaaggccaagaggaacagccagtgggtccccaccctgcccaacagctcccac
cacctggatgctgtgccctgttccaccaccatcaacaggaaccgcatgggtcgggacaag
aagagaaccttccccttgtgctttgatgaccacgacccagctgtgatccatgagaatgcg
tcacagcctgaggtgctggtgcccatccggctcgacatggagatcgacgggcagaagctg
cgagacgcttttacctggaacatgaatgagaagctaatgactcctgagatgttttcagaa
atactttgtgatgacctggatttgaatccactgacttttgtgccagctattgcctctgcc
attcgacagcagattgagtcctaccccacagacagcatcctagaggatcaatccgaccag
cgtgtcatcatcaagctgaacatccacgtggggaacatctccctggtggaccagtttgag
tgggacatgtcagagaaagagaactccccagagaagtttgccctgaagctgtgctcagag
ctgggcttgggcggggagtttgtcaccaccattgcatacagcatccgaggacagctgagc
tggcaccagaagacctatgccttcagtgagaacccacttcccacagtggagattgccatc
cgaaataccggagatgctgaccagtggtgccccctgctggagacactgactgatgccgag
atggagaaaaagatccgggatcaagataggaacacaaggcgaatgaggcgtcttgccaac
actgccccagcctggtga
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integrated database retrieval system
