Mus musculus (house mouse): 212728
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Entry
212728 CDS
T01002
Symbol
Tarbp1, Gm17296, Gm179
Name
(RefSeq) TAR RNA binding protein 1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
mmu
Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mmu03016
]
212728 (Tarbp1)
03036 Chromosome and associated proteins [BR:
mmu03036
]
212728 (Tarbp1)
Enzymes [BR:
mmu01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
212728 (Tarbp1)
Transfer RNA biogenesis [BR:
mmu03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
212728 (Tarbp1)
Chromosome and associated proteins [BR:
mmu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
212728 (Tarbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
212728
NCBI-ProteinID:
NP_001153379
MGI:
4936930
Ensembl:
ENSMUSG00000090290
UniProt:
E9Q368
LinkDB
All DBs
Position
8:complement(127152053..127201837)
Genome browser
AA seq
1579 aa
AA seq
DB search
MERVLADALLTQSREPGELLGALCGGEASAERAETLRLVLQRLEERGAGAGALAKAAHEV
ARDHLVPLLHASQGGGPARPRVLRAASAALRSCARLAGPELAVTLAEEALRELPSAPAVE
LLAAVAPCLRAPEDAPLLRRLGRASVELALAGDAPPAVGARLLPALAQSAEPALRAAWDA
LSSAGPGAEGSTGPELLVLSALAEKLLTNHERHGDLDARLCGRFWRTVQAGLGRAQDGLT
RKRARYLLQRAVQVSAELAVDCSCSPQDTKGPSLFWWSEKRKDELLKFWENYILIMEILE
GNQIHVIKPALPKLNRLFECAVSEENGCWLFHPSWHTCIYKRMFESENKILAKEGVIHFL
ELYDVKSLPYSPELSEFITGPLMDALSESCLYSRSPGQPLGSDSPLGLKLQKFLVTYTSL
LPEETKSCFLLKLIQRMADRHWCAVPVLFLSRALASIPSCKALGGEGLLALRDVLQRTMI
THQVLLRGAAQCYLLQTAMRLVDVEKVSLSDISAFLLSLRQEESLGRGTVLWTELCDWLR
VNERYFKQSSLGGSDGQEASLNAYVKNLVQEFVKSPGWEKESSFMPDWLDARLTALMVLL
AVDVEGLKTKFREKQRTQNVLRIFLDPLLDALGKLGTNAYMPLLRTDRCLQLLVRLLHSC
VPRRPGAQDDEVSTALQGSIMSASESVSQFVLRRLTMNELQDVADLDRCQLYLTVLSELM
SLQVKLGWKAGNPISRVLSPLKNACVRHLQEAEDRQEPTLSHQVQRVVSMAALAALCEAV
DQYPVLQPDSPNAEPVDRFLSALPLNHVLQKPRSEEQSIGVCPLENGSVFEESLSSKGWG
KVVAQYLHDQWVCLSFLLRKHHHLIPSTESDVLEGFLPTAETPVQALQAALDVLTVLPAG
RILPVFRCMEVLVPKLLTSEETLCIESFDVAWKIISSLSNTQLTFWPNLKAFVHFVFDHE
ILTIAAKLKGQVYFKIKEIMCKMIEMSSIKSGVFNILIRHCCQSWLVAASGVSQGSFSSA
KDYSELVLEACVFGTVFRRDQRLIQDVQTFIENLGQGCAANVIIENAKREDYYVRICAIK
FLCLLDGSDVSHKLFLEALAIKLLDKDESASRSRTRYHENSLQHRVKNRVWQTLLVLFPA
FDQNFLHGIIDKVFHAGFTNNQASIKYFIEWLIILILHKFPEFLPKFWACFSYGEEKIKA
SICTFLSVLSHLDIIVQNIPEKKLVLKQALTVALQWCLSHNFSVRLYALVALKKAWHLCK
TLQFEECGAWTAVIECSLSQAESMHGAGNARKNWQRIQDHFFFSTFHPLKDYCLETIFYT
LPRLSGVTGEEWIALDKFANFTDIPSNAGSQWYLSGTALGELSPGDWSQQDQGSTLGEAD
SQSEWADVQKKIIPWGQSALESDLELEFQDRAAKLGKSISRLIVVASLIDKPTNLGGLCR
TCEVFGAAVLVVGSLQCVSDRQFQHLSVSAEQWLPLVEVRPSQLMNYLQQKKAEGYTVIG
VEQTAQSSDLAQYRFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGA
LLIWEYTRQQLLGCAEPPS
NT seq
4740 nt
NT seq
+upstream
nt +downstream
nt
atggagcgggtgttggcggacgcgcttctaacgcagagtcgggagcccggcgagttgctg
ggcgcgctgtgcggcggggaggcgagtgcggagcgggcggagaccctgcgcctggtgctg
cagcggctggaggagcgcggcgcgggcgccggcgcgctggccaaggcggcacacgaggtg
gccagggaccacctggtgcccttactgcacgcgtcccagggcggagggcctgcgaggccc
cgcgtgctccgagcggcgagtgcggcgctgcgctcgtgcgcgcgcctggcaggaccggag
ctggcagtcactctggccgaagaagcgctgcgcgagctgccgagcgcgccagccgtggag
ctgctggccgccgtggcgccgtgtttacgcgcgccggaggatgccccgctgctgcgtcgc
ctggggcgcgcgtctgtggagctggcgctggccggggacgcgccgccggccgtgggagcg
cgcctgctgcccgcgctggcacagagcgcagaaccggctctgcgtgcggcgtgggacgcg
ctgagctccgcgggaccgggagctgagggcagcactgggccagaactgctggtgctgagc
gcactggccgagaagctgctgaccaaccatgagcgccacggggatctcgacgcccgtctc
tgcggccgcttctggagaaccgtccaggcggggctgggccgcgcgcaggacgggctcacg
cgaaagcgcgcgcgctacctgctgcagagggctgtacaggtgtctgcagagctggcggtg
gactgctcctgcagcccccaggacacaaaaggtccgagcctattctggtggtctgagaag
agaaaagatgagctcctaaagttttgggaaaactatatcttgatcatggaaattttggaa
ggaaaccagatacatgtcataaagccagccttaccaaagctaaacaggctgtttgaatgc
gcagtgtcagaggagaatggctgctggctcttccatccctcctggcacacgtgcatctac
aaaagaatgtttgaaagcgagaataaaattctggccaaagaaggcgtgatccacttcttg
gagctgtatgacgtgaaatcgcttccttattccccggaactctcagagtttattactggc
ccgctgatggatgccctctcagagagctgtctgtacagcaggtccccagggcagccgttg
ggaagtgactctcccctgggattaaagctgcagaagtttctagtcacttatacttccctt
cttccagaagaaacaaagagttgtttcctgttaaagctcattcagagaatggcggacaga
cactggtgtgcagtgccggttttgttcctgtccagggctttggcaagcatacccagctgt
aaggccctgggtggagaaggtcttcttgccctcagggatgttctccagcgcaccatgatc
acacaccaggtcctcctgagaggagcagctcagtgctaccttcttcagacagccatgcgt
ctggtggacgtggagaaagtatctctttctgacatctcagcttttctcttgtctctgaga
caagaggagtccctcggacgtgggacggtgctgtggacagagctctgtgactggctacgt
gtcaatgaaagatactttaagcaatcctcacttggtggctctgatggacaggaggcgtca
ttaaatgcttacgtgaagaacctagttcaggagttcgtgaagtctcctggttgggaaaaa
gaaagcagcttcatgccagactggctggacgccaggctgacagcgctgatggtcctgctg
gctgtggacgtggaaggactgaagaccaagttcagggaaaagcagaggactcagaacgtg
ttgaggatcttcctagaccccttgctggatgccctagggaagctcggcaccaatgcctac
atgcccttgctgaggactgaccggtgcctccagctgctggtgaggttgctgcattcttgt
gtgccaagacgtcccggtgcccaggatgatgaggtatccactgccctccagggctccatc
atgtctgcttcagagagcgtgtctcagtttgtgctcaggagactcaccatgaacgagctg
caggatgtggcggatctggaccgatgtcagctctacctgacggtgttgtctgagctcatg
agtctccaggttaagctgggctggaaagcaggcaaccccatcagccgggtcctttctcct
ttgaaaaacgcatgtgttcgccatctgcaggaggctgaggacagacaggagccgaccttg
agtcatcaggtacagagagtggtcagcatggccgccctggcagctctgtgtgaggctgtg
gaccagtacccagtgctgcagcctgactcccccaatgctgagcctgtggacaggttcctg
tcagctcttccactcaatcacgtgctgcagaagccccgatcagaggagcagagcatcggt
gtgtgtcccctggagaatggcagtgtctttgaagaatcattgtcttccaaaggatggggg
aaagtagttgcacagtatctacatgatcagtgggtctgcctctccttcctgctgagaaag
caccaccacctcattccaagcacggaaagtgacgtgctggagggctttctccctactgct
gagacacctgtgcaggccctgcaggcagcgctggacgtcctcaccgtcctccctgctggc
cgcatcttgcctgtgttccgctgcatggaggtgctagttcccaagctcctgacctccgag
gagaccctctgcatagagtcctttgacgtggcttggaaaattatatcttccttgagcaac
acacagctgacgttctggcctaatttaaaggcttttgttcactttgttttcgaccatgag
attcttaccattgctgcaaaactcaagggccaggtgtacttcaaaataaaagagattatg
tgcaagatgattgaaatgtcctccataaaatcaggtgtcttcaatattctgatacgtcac
tgctgccagtcatggctagtggctgcttccggcgtgtcccaggggtcattctccagtgct
aaggattacagtgaacttgtcctggaggcttgcgtgtttggaacagtgtttaggcgcgat
cagagacttattcaggatgtccaaaccttcatagaaaaccttggacaaggctgtgcagca
aacgtcatcattgagaatgctaagagagaagattattacgtgagaatctgtgccatcaaa
ttcttgtgtctgctagatggctccgatgtgtcccacaagttgttcttagaagctcttgcc
atcaagctcttggataaggatgagtcagcatccaggtccagaactcgataccatgagaac
tccctccagcaccgggtgaagaaccgtgtgtggcagactctgcttgtcctcttccctgca
tttgatcagaacttcttacatggaattattgataaggtctttcacgctggcttcaccaac
aatcaagcgtccataaaatattttattgagtggcttattatattgattcttcataaattc
cctgagtttcttccaaagttctgggcgtgtttttcttacggtgaagaaaaaattaaggca
agcatttgtacatttttatctgttttatcacatttggacatcattgttcagaatattcca
gaaaagaagctggttctgaagcaagctctcaccgttgccctccagtggtgtctgagtcac
aatttcagtgttcggctctatgctctggtagccctcaagaaggcctggcatctgtgtaaa
acactgcagtttgaggagtgtggcgcctggaccgcagtcatcgagtgcagcctcagccaa
gcagaaagcatgcacggagcagggaatgccaggaagaactggcagcgcatccaggaccat
ttcttcttctccaccttccacccccttaaggactactgtctggagaccatattttacacg
ctcccacggctctcgggtgtcactggagaggagtggatcgccttggataaatttgccaac
ttcacagacatcccttccaatgcagggtcccagtggtacctgtctgggactgcactcggt
gagctgagtccaggagactggtcccagcaggaccaaggttctactttgggtgaagcagac
agccagtcagaatgggctgatgtccagaaaaaaatcatcccatggggacaaagcgctctg
gaatcagacctggagctcgagtttcaggatcgggctgccaagctcggaaagtccattagc
agactgatcgttgtggcctcactcatcgacaagccgaccaacctgggagggctgtgcagg
acctgtgaggtgttcggggctgcagtacttgttgtcggcagccttcagtgtgtcagcgat
agacagttccagcacctcagtgtgtctgcagagcagtggcttcctctggtggaggtgaga
ccatcccagctgatgaattatctgcagcagaaaaaggcagaaggctacactgtcattggc
gtggagcagacagcgcaaagctcagatctggcccagtaccgcttccctgagaagtcgctg
ctgctgttgggaaacgagcgggaaggaatcccagccaacctgatccagcagctggatgtg
tgtgtggagattcctcagcagggcatcatccgctcactaaatgtgcatgtgagcggggct
ctgctgatttgggagtacaccagacagcagctgctcgggtgtgcggagccaccatcctga
DBGET
integrated database retrieval system
