Mus musculus (house mouse): 225929
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Entry
225929 CDS
T01002
Symbol
Patl1, Pat1b
Name
(RefSeq) protein PAT1 homolog 1 isoform 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
225929 (Patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmu03019
]
225929 (Patl1)
Messenger RNA biogenesis [BR:
mmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
225929 (Patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
225929 (Patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
225929
NCBI-ProteinID:
NP_766223
MGI:
2147679
Ensembl:
ENSMUSG00000046139
UniProt:
Q3TC46
LinkDB
All DBs
Position
19:11889728..11922462
Genome browser
AA seq
770 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PVAADEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPLQGPEDDRDLSERALPRRSTSP
IIGSPPVRAVPIGTPPKQMAVPSFNQQILCPKPVHVRPPMPPRYPAPYGERISPNQLCSV
PNSSLLGHPFPPNVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAAMNPKL
LQGRVGQMLPPAPSFRAFFSAPPPATPPPQQHPPGPGPHLQNLRPQAPMFRADTTHLHPQ
HRRLLHQRQLQSRNQHRNLNGTGDRGGHQSSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYQPVQFEG
SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
RRYLLSLEEERPALMDERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILMATARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQLM
NLPQSASAPAPSNSHLTAVLQNKFGLSLLLILLSRGEDLQSSDPAIESTQNNQWTEVMFM
ATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttggaggattgtcctctagatgaagatgaagatgcatttcaa
ggcctgggagaagaagatgaagaaattgatcaatttaatgatgatacctttgggtcaggt
gcagttgatgatgattggcaggaagcacatgagcgcctggctgagttggaagagaagcta
cctgtggcagctgatgaacaaacaggcaatggagagagagatgagatggatttgttgggt
gaccatgaggagaatctagcagaaaggctcagtaagatggtgattgaaaatgagctagaa
gatccagctatcatgagggcagtacagaccaggccagttttacaacctcaaccaggaagt
ctgaattccagcatctgggatggatctgaagttctgaggcgaatccgtggaccactactt
gctcaggaaatgcctacagtgtctgtattagagtatgccttgcctcagaggcccctgcag
ggcccagaagatgatcgggacctttctgagcgagctttaccaaggcggtcaacatcacct
atcattggaagtcctcctgttagagccgttcctataggcaccccacctaagcagatggct
gttcccagcttcaaccaacagatcctgtgtccgaagcctgttcatgttcggcccccaatg
ccgccacgctatcctgctccctatggcgagaggatatctccaaaccagctctgcagtgtc
ccgaactcctccctcctgggccacccttttcctcctaatgttcctcctgtacttagtccc
ctgcagagagcacagcttcttgggggagcacagctacagcctggacgaatgtctcccagc
cagtttgcacgggtccctgggtttgttggtagcccactggctgccatgaatcctaagttg
ctacaagggcgcgttgggcagatgcttcccccagcaccaagcttccgtgccttctttagt
gctccaccccccgctacgccacctccacagcagcatccccctggcccaggacctcaccta
caaaacctcagacctcaggccccaatgtttagagcagacacaactcaccttcatccacag
caccggcgcctgttgcatcagaggcagctgcagagcagaaatcagcatcggaatctcaat
ggtactggagatagaggagggcaccagtccagtcatcaagatcatctccggaaggatcca
tatgctaatctaatgttgcagcgggagaaggattgggtctctaaaatacagatgatgcag
ctgcagagcactgatccctacctggatgatttctattaccagaattactttgaaaaactg
gagaaattgtcagctgctgaggaaatacaaggtgatggccctaagaaggagcgtaccaag
ctcatcacccctcaggtggccaaactggagcatgcttatcagcctgtgcagtttgagggc
tcgttggggaagcttactgtctctagtgtgaataatcctcggaagatgatagatgctgtt
gtgacatctcgaagtgaggatgatgaaacaaaagaaaaacaagttcgggataagagaaga
aaaacccttgttataattgagaaaacctatagtttactccttgatgtggaggattatgaa
aggcgctatctcctaagtctagaagaagagcggcctgccctgatggatgaaagaaagcac
aaaatatgtagcatgtatgacaacctgaggggcaaattgcctggacaagagaggccaagt
gatgaccactttgtacagatcatgtgtatccgaaaagggaagagaatggttgcccgcatt
ctccctttcctctccacagagcaagcagctgacattctcatggcaactgccaggaacctc
cctttccttatcaagaaggatgcccaagatgaggtgctgccatgcttactgagtcccttc
tctctcctcctctatcatcttccttcagtgactgtcaccagccttctgcaacagctaatg
aacctacctcagagtgcaagtgcaccagcgccctccaactctcacctcactgctgtgctc
cagaacaagtttggcttgtcactgctcctaatcctactaagccgtggagaagacctacag
agttcagatcctgctatagaatcaacgcaaaataaccagtggacagaggtgatgttcatg
gcaacccgagaacttctacggatcccccaagctgccctggccaaaccaatctctatccct
acaaatctagtgtcccttttttctcgctatgttgaccggcagaaactgaacttgctggaa
acaaaactgcagctggttcaggggatacggtaa
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