Mus musculus (house mouse): 239985
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Entry
239985 CDS
T01002
Symbol
Arid1b, 8030481M12, 9330189K18Rik, Ardi1b, B230217J03Rik, BAF250B, mKIAA1235
Name
(RefSeq) AT-rich interaction domain 1B
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu03082
ATP-dependent chromatin remodeling
mmu04714
Thermogenesis
mmu05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
239985 (Arid1b)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
239985 (Arid1b)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
239985 (Arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mmu03000
]
239985 (Arid1b)
03021 Transcription machinery [BR:
mmu03021
]
239985 (Arid1b)
03036 Chromosome and associated proteins [BR:
mmu03036
]
239985 (Arid1b)
Transcription factors [BR:
mmu03000
]
Eukaryotic type
Helix-turn-helix
ARID
239985 (Arid1b)
Transcription machinery [BR:
mmu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
239985 (Arid1b)
Chromosome and associated proteins [BR:
mmu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
239985 (Arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
239985
NCBI-ProteinID:
NP_001078824
MGI:
1926129
Ensembl:
ENSMUSG00000069729
UniProt:
A0A8Q0PK87
LinkDB
All DBs
Position
17:5044481..5397931
Genome browser
AA seq
2244 aa
AA seq
DB search
METGLLPNHKLKAVGEAPAAPPHQQHHHHHAHHHHHHHAHHLHHLHHHHALQQQLNQFQQ
PQPPQPQQQQPPPPPQQQHPTANNSLGGAGGGAPQPGPDMEQPQHGGAKDSVAGNQADPQ
GQPLLSKPGDEDDAPPKMGEPAGSRYEHPGLGAQQQPAPVAVPGGGGGPAAVSEFNNYYG
SAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAGAPSSMDPLQNSHEGYPNSQYN
HYPGYSRPGAGGGGGGGGGGGGSGGGGGGGGAGGAGGAAAAAAGAGAVAAAAAAAAAAAA
AAGGGGGGGYGSSSSGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGAAAAAGGFQRFA
GQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPDYSSSSAPPPPSQPQSQAAAGAAAGGQQ
AAAGMGLGKDLGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQL
YGMGTHPHSQPQQSSPYPGGSYGPPGAQRYPLGMQGRAPGALGGLQYPQQQMPPQYGQQA
VSGYCQQGQQPYYNQQPQPSHLPPQAQYLQPAAAQSQQRYQPQQDMSQEGYGTRSQPPLA
PGKSNHEDLNLIQQERPSSLPDLSGSIDDLPTGTEATLSSAVSASGSTSSQGDQSNPAQS
PFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPPGSQSESSSH
PALSQSPMPQERGFMTGTQRNPQMSQYGPQQTGPSMSPHPSPGGQMHPGISNFQQSNSSG
TYGPQMSQYGPQGNYSRTPTYSGVPSASYSGPGPGMGINANNQMHGQGPAQPCGAMPLGR
MPSAGMQNRPFPGTMSSVTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQ
SRQGSFPGMNQSGLVASSSPYSQSMNNNSSLMSTQAQPYSMTPTMVNSSTASMGLADMMS
PSESKLSVPLKADGKEEGVSQPESKSKDSYGSQGISQPPTPGNLPVPSPMSPSSASISSF
HGDESDSISSPGWPKTPSSPKSSSSSTTGEKITKVYELGNEPERKLWVDRYLTFMEERGS
PVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQY
IQYLFAFECKTERGEEPPPEVFSTGDSKKQPKLQPPSPANSGSLQGPQTPQSTGSNSMAE
VPGDLKPPTPASTPHGQMTPMQSGRSSTVSVHDPFSDVSDSAYPKRNSMTPNAPYQQGMG
MPDMMGRMPYEPNKDPFSGMRKVPGSSEPFMTQGQVPNSGMQDMYNQSPSGAMSNLGMGQ
RQQFPYGTSYDRRHEAYGQQYPGQGPPTGQPPYGGHQPGLYPQQPNYKRHMDGMYGPPAK
RHEGDMYNMQYGSQQQEMYNQYGGSYSGPDRRPIQGQYPYPYNRERMQGPGQMQPHGIPP
QMMGGPMQSSSSEGPQQNMWATRNDMPYPYQSRQGPGGPAQAPPYPGMNRTDDMMVPEQR
INHESQWPSHVSQRQPYMSSSASMQPITRPPQSSYQTPPSLPNHISRAPSPASFQRSLES
RMSPSKSPFLPTMKMQKVMPTVPTSQVTGPPPQPPPIRREITFPPGSVEASQPILKQRRK
ITSKDIVTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLVE
YFRKCLIDIFGILMEYEVGDPSQKALDHRSGKKDDSQSLEDDSGKEDDDAECLVEEEEEE
EEEEEDSEKIESEGKSSPALAAPDASVDPKETPKQASKFDKLPIKIVKKNKLFVVDRSDK
LGRVQEFSSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRRPPPPLSSTGKKKELEGKGDS
EEQPEKSIIATIDDVLSARPGALPEDTNPGPQTDSGKFPFGIQQAKSHRNIRLLEDEPRS
RDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHPGLVLILGKLILLHHEH
PERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLANISGQLDLSAYTESIC
LPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDLILATPPF
SRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDTLAARAIAVQKGSIGNLISFLED
GVTMAQYQQSQHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVDENRSEFLLHEGRLLDI
SISAVLNSLVASVICDVLFQIGQL
NT seq
6735 nt
NT seq
+upstream
nt +downstream
nt
atggagaccgggctgctccccaaccacaaactgaaagccgttggcgaggcccccgctgca
ccgccccatcagcagcaccaccaccaccatgcccaccaccaccaccaccaccatgcccac
cacctccaccacctccaccaccaccacgcactacagcagcagctaaaccagttccagcag
ccgcagccgccgcagccacagcagcagcagccgccgccaccgccgcagcagcagcatccc
actgccaacaacagcctgggcggtgcgggcggcggcgcgcctcagcccggcccggacatg
gagcagccgcaacatggaggcgccaaggacagtgtcgcgggcaatcaggctgacccgcag
ggccagcctctgctgagcaaaccgggcgacgaggacgacgcgccgcccaagatgggggag
ccggcgggcagccgctatgagcacccgggcctgggcgcgcagcagcagcccgcgccggtc
gccgtgcccgggggcggcggcggcccagcggccgtctcggagtttaataattactatggc
agcgctgcccctgctagcggcggccccggcggccgcgctgggccttgctttgatcaacat
ggcggacaacaaagccccgggatggggatgatgcactccgcctctgccgccgccggggcc
cccagcagcatggaccccctgcagaactcccacgaagggtaccccaacagccagtacaac
cattatccgggctacagccggcccggcgcgggcggcggcggcggcggcggcggaggagga
ggaggcagcggaggaggtggaggaggaggaggagcaggaggagcaggaggagcagcggca
gcggcagcaggagccggagctgtggcggcggcggccgcggcggcggcggcagcagcagca
gcagcaggaggaggcggtggcggcggctatgggagctcgtcctcggggtacggggtgctg
agctccccgcggcagcagggcggcggcatgatgatgggccccgggggcggcggggccgcg
agcctcagcaaggcggccgccggcgcggcggcggcggcggggggcttccagcgcttcgcc
ggccagaaccagcacccgtcgggggctacaccgaccctcaaccagctgctcacctcaccc
agccccatgatgaggagctacggcggtagctaccccgactacagcagctccagcgcgccg
ccgccgccgtcgcagccccagtcccaggcggcggcgggggcggcggcgggtggccagcag
gcggccgcgggcatgggcttgggcaaggacctaggcgcccagtacgccgctgccagcccg
gcctgggcggccgcgcaacaaaggagtcacccggcgatgagccccggcacccccggaccg
accatgggcagatcccagggcagcccgatggacccaatggtgatgaagagacctcagttg
tatgggatgggtactcacccccactcccagccacagcagagcagcccatacccaggaggc
tcctacggtcccccaggtgcacagcggtatccccttggcatgcagggccgggctccaggg
gccctgggaggcttgcagtacccgcagcagcagatgccaccgcagtacggacagcaagct
gtgagtggctactgccagcaaggccagcagccatactacaaccagcagccgcagccctcg
cacctcccgccccaggcacagtacctgcagccggcggcggcgcagtcccagcagaggtac
cagccacagcaggacatgtctcaagaaggctatggaactagatctcagcctcctctggcc
cctggaaaatccaaccatgaagacttgaatttaattcaacaggaaagaccatcgagtcta
ccagacctgtctggctccatcgatgacctccccacgggaacagaagcaactctgagctca
gcagtcagtgcatccgggtctacaagcagccagggagatcagagcaacccagcgcagtct
cctttctccccacatgcatcacctcacctctccagcatccctggagggccgtcaccttct
cctgttggctctcctgtgggaagcaaccaatcgaggtctggtccgatctcccctgcgagt
attccaggtagccagatgcctccgcaaccacctggaagccagtcagaatccagttcccat
cctgccttgagccagtcaccaatgccacaggaaagaggttttatgacaggcactcagaga
aaccctcagatgtctcagtacggacctcagcagacaggaccatccatgtcgcctcaccca
tctcctgggggccagatgcatcctgggatcagtaactttcagcagagtaactcaagtggc
acgtacggcccacagatgagccagtatggaccccaaggcaactactccagaaccccaaca
tatagcggggtacccagtgcaagctacagcggcccagggcccggtatgggcatcaatgcc
aacaaccagatgcatggacaagggccagcccagccatgtggtgctatgcccctgggacga
atgccttcagctgggatgcagaacagaccatttcctggaaccatgagcagcgtcaccccc
agttctcctggcatgtctcaacagggagggccaggaatgggcccaccaatgcccactgtg
aaccggaaggcccaggaagctgccgcagctgtgatgcaggctgctgcaaactcagcacaa
agcaggcaaggcagttttcctggcatgaaccagagtggcctggtggcctccagctctccc
tacagccagtccatgaacaacaactccagcctgatgagcacccaggcccagccctacagc
atgacgcccacaatggtgaacagctccacagcatctatgggtcttgcagatatgatgtct
cccagtgagtccaaattgtctgtgcctcttaaagcagatggtaaagaagaaggcgtgtcc
cagcctgagagcaagtcaaaggacagctatggctctcagggcatttcccagcctccaacc
ccaggcaacctgcctgtcccttccccaatgtctcccagctctgccagcatctcctccttt
catggagatgagagtgacagcattagcagcccaggctggcccaagacaccatcaagccct
aagtccagctcttcctccaccactggggagaagatcacgaaggtctatgagctggggaat
gagccggagaggaagctgtgggtcgaccgttacctaacgttcatggaagagaggggctcc
ccggtgtccagtctgccagcagtgggcaagaagcccctggacctgttccgactgtatgtc
tgcgtcaaggagattggaggtttggcgcaggttaataaaaacaagaagtggcgtgagctg
gcaaccaacctgaacgttggcacttccagcagcgcagccagctctctgaaaaagcagtat
attcagtacctgttcgcctttgagtgcaaaactgagcgcggggaggagcccccacctgaa
gtcttcagcaccggggattcgaagaagcagccaaagctccagccgccatctcctgctaac
tcaggatccttacaaggcccacagactccacagtcaactgggagcaattcgatggcagag
gttccaggtgacctgaagccaccaaccccagcctctacccctcatggacagatgactccc
atgcaaagcggaagaagcagtacagtcagtgtgcatgacccgttctcagacgtgagtgac
tcagcgtacccaaaacggaactccatgactccaaacgccccataccagcagggcatgggc
atgccagacatgatgggcaggatgccctatgaacccaacaaggaccctttcagtggaatg
agaaaagtgcctggaagtagtgagccctttatgacacaaggacaggtgcccaacagcggc
atgcaggacatgtacaaccagagcccctcaggggccatgtccaatctgggcatgggacag
cggcagcagtttccctatggaaccagttatgaccgaaggcatgaggcttacggacagcag
tacccaggccaaggccctcccacaggacagccaccgtatggaggacaccagcctggcctg
tacccacagcagccgaattacaaacgtcatatggatggcatgtacgggcctccagccaag
cggcacgagggagacatgtacaacatgcagtatggcagccagcagcaggagatgtataac
cagtatggaggctcctactctggcccggacagaaggcccatccagggacaatatccctac
ccctacaacagagaaaggatgcagggcccaggccagatgcagccacacggaatcccacct
cagatgatggggggccccatgcagtcatcctccagcgaggggcctcagcagaacatgtgg
gctacacgcaacgatatgccttatccctaccagagcaggcaaggcccgggcggccctgca
caggcccccccttacccaggcatgaaccgcacagatgatatgatggtacctgagcagagg
atcaatcacgagagccagtggccttctcacgtcagccagcgccagccttacatgtcatct
tcggcctccatgcagcccatcacgcgcccacctcagtcatcctaccagacgccgccgtca
ctgccaaaccacatctccagggcacccagccccgcctccttccagcgctccctggagagt
cgcatgtctccaagcaagtctcccttcctgcccaccatgaagatgcagaaggtcatgccc
acagtccccacatcccaggtcaccgggccccccccacagcctccaccaatcagaagggag
attacctttcctcctggctccgtagaagcatcacagccaatcctgaaacaaaggcgaaag
attacctcaaaagatattgttactcccgaggcgtggcgtgtgatgatgtcccttaaatcg
ggtctgttggctgagagcacgtgggctctggacaccatcaatattctcctctatgatgac
agcaccgtcgccaccttcaatctttcccagctgtctggattcctggaactattagtagag
tactttcgaaaatgcctaattgacattttcggaattcttatggaatatgaagtgggtgac
cccagccaaaaggctcttgatcaccgttcagggaagaaagatgacagccagtccctggaa
gatgattctgggaaggaagacgatgatgctgagtgtcttgtggaagaggaggaggaggaa
gaggaggaggaggaagacagtgaaaagatagagtcagaggggaagagcagccctgcccta
gctgctccagatgcctccgtggaccccaaggagacgccaaagcaggccagtaagtttgac
aagctgcccataaagattgtcaaaaagaacaagctgtttgtggtggaccggtccgacaag
ctgggccgagtgcaggagttcagcagcgggctcctccactggcagctgggtggtggcgac
actaccgagcacatccagactcacttcgagagcaagatggagatccctcctcgcaggcgt
ccacctccgcctctaagctccacgggtaagaagaaagagctggaaggcaaaggtgattct
gaagagcagccagagaaaagtatcatagccaccatcgatgacgtcttgtctgcccggcca
ggggctctgcctgaagacaccaacccaggaccccagaccgacagcggcaagtttcccttt
ggaatccagcaggccaaaagccaccggaacatcaggctcctggaagacgagcccaggagc
cgagacgagacgccgctgtgcaccatcgcgcactggcaggactcactggccaagcgctgc
atctgtgtgtcgaacatcgtgcggagcttgtctttcgtgcctggcaacgacgcagagatg
tccaaacacccgggcttggtgctgatcctgggaaagctgattctgctgcatcacgagcat
ccggagagaaagcgggcgccacagacctatgagaaggaggaggacgaggacaagggggtg
gcctgcagcaaagatgagtggtggtgggactgcctcgaggtcttgcgggataacaccctg
gtcacgttggcgaacatttccgggcagctagacttgtctgcttacacagagagcatctgc
ttgccgatcctggacggcttgctacactggatggtgtgcccgtccgcagaggctcaggac
ccctttcccactgtggggcccaactcagtcctgtcgccgcagagacttgtgctggagacc
ctgtgtaaactcagtatccaggacaacaacgtggacctgatcttggccacgcctccattt
agtcgtcaggagaaattttatgctacattagttaggtacgttggggatcgcaaaaatcca
gtctgtcgagaaatgtccatggcgcttttatcgaaccttgcccagggggacacactggcg
gcgagggcaatagctgtgcagaaaggaagcattggtaacttgataagcttcctagaggac
ggggtgacgatggcgcagtaccagcagagccagcataaccttatgcacatgcagccccca
cctctggaaccccctagtgtagacatgatgtgccgggcggccaaagctctgctggccatg
gccagagtggacgagaaccgctcggagttccttttgcacgagggtcggttgctggatatc
tcaatatcagctgtcctgaactctctggttgcatctgtcatctgtgatgtactgtttcag
attgggcagttatga
DBGET
integrated database retrieval system
