Mus musculus (house mouse): 240255
Help
Entry
240255 CDS
T01002
Symbol
Ythdc2, 3010002F02Rik, mYTHDC2
Name
(RefSeq) YTH domain containing 2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
mmu
Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmu03041
]
240255 (Ythdc2)
Enzymes [BR:
mmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
240255 (Ythdc2)
Spliceosome [BR:
mmu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
240255 (Ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
nSTAND3
Ank
AAA_22
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
AAA_29
Ank_4
T2SSE
ABC_tran
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
240255
NCBI-ProteinID:
NP_001156485
MGI:
2448561
Ensembl:
ENSMUSG00000034653
UniProt:
B2RR83
LinkDB
All DBs
Position
18:44961521..45022782
Genome browser
AA seq
1445 aa
AA seq
DB search
MSRPSSVSPRPPAPSGGGTGGGGGGSGGGGGGGGGGPASCGPGGGGRAKGLKDIRIDEEV
KIAVNIALERFRYGDQREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKK
DGSETAHAMMTCNLTHNTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSK
TSGRLNNGIPQVPVKRGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQ
IPQFLLDDCFKNGIPCRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPK
TLLTFCTNGVLLRTLMAGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLI
LSSAALDVNLFIRYFGSCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREE
KQQTTLTEWYSAQENTFKPESQRQRAVASVSEEYDLLDDGGDAVFSQLTEKDVNCLEPWL
IKEMDACLSDIWLHKDVDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFTSQVEQ
LISMGANVHSKASNGWMALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGNDLS
AEDRELLKAYHHSFDDEKVDLDLIMHLLYNICHSCDAGAILIFLPGYDEIVGLRDRILFD
DKRFADNTHRYQVFMLHSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVID
SGKVKEKSFDALNFVTMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQT
PELLRMPLQELCLHTKLLAPVNCTIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDL
TELGYHLADLPVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLC
RKRFTAGTFSDHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLR
ASGFVRARGGGDIRDVNTNSENWAVVKAALVAGMYPNLVHVDRENVILTGPKEKKVRFHP
TSVLSQPQYKKIPPANGQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCG
PARLASNALQEPSSFRADGIPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEAASLLLQ
LRQKWHSLFLRRMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSE
ELPLASSWRSNNSRKSTADTEFADGSTTGERVLMKSPSPALHPPQKYKDRGILHPKRSTD
DRSDQSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQ
QKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGL
GGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGE
KTTSD
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcgtctcgccgcgtccgccggctcctagcggaggcggcacgggc
ggcggtggaggtggcagtggcggcggcggtggcggtggcggcggcggcccagcttcgtgt
ggtcctggaggcggtggccgggccaagggcctcaaagacattcgtatcgacgaggaggtg
aagatcgccgtcaacatcgctctggagcgcttccgctacggtgaccagagagaaatggaa
ttcccttcttctttgaccagtacggaaagagcctttattcaccgactaagtcaatctctt
ggtttagtttctaaaagtaaaggaaagggagcaaatagatacctaactgtgaagaagaaa
gatggatcagaaacagctcatgcaatgatgacctgtaatttgactcataacacaaaacat
gctgttaggagcctaattcagagatttcctgtcaccaataaagaacgtactgaactccta
cctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaaccgagaaatgagcaag
acaagcgggcgactcaacaatggcattcctcaagttcctgtgaaaaggggagagtctgaa
tttgactcattcaggcagtctttaccagtttttgagaaacaagaagaaattgttaaaata
attaaggaaaataaagtagttttgatagtaggagaaactgggtctggaaagaccacacag
attcctcagttcctgttagatgattgctttaaaaatggcatcccctgccgaatattttgt
actcaaccaagacgactagcagcgattgctgtggctgaaagagttgctgcagagagaaga
gaaagaattggtcaaacaattggttatcagatccgattagaaagcagggtttcgccaaag
acacttctgacattttgcactaatggggtattgcttcgtacattgatggcaggtgatagc
acattgtcaactgtgacccatgttattgtggatgaagtgcatgaaagggatcgattcagt
gattttttgcttactaagttaagagatttgttgcaaaagcacccaactttgaaactaatt
ctttcgagtgctgccttggatgtgaacctcttcataagatattttggaagttgtccagtg
atatatatacagggaagaccatttgaagtaaaagaaatgtttctggaagatattttaaga
actacaggatataccaacaaagaaatgttaaagtacaaaaaggaaaagcaacgagaggag
aaacaacagaccaccctcacagagtggtactcagctcaagagaataccttcaagcctgag
tctcagaggcagagagctgttgctagtgtgtctgaagagtatgacttattggatgatgga
ggtgatgctgtcttcagtcagctgacagaaaaagatgtgaattgccttgaaccatggtta
atcaaggagatggatgcctgcctttctgacatatggctgcataaagatgttgatgctttt
gctcaggtctttcatcttattttaactgaaaatgttagtgttgattataggcatagtgag
accagtgcaacagctctgatggttgctgcaggacggggctttacgagccaagtagagcag
ttaattagtatgggagccaatgtccacagtaaagcatcaaatggctggatggctttagat
tgggctaagcactttggacagactgaaattgtggatcttctagaatcttacagtgcttca
ttggaatttggaaatctagatgaaagttccttggttcagacaaatgggaatgacctcagt
gcagaagacagagagctgttgaaagcttaccatcatagttttgatgatgagaaagtagac
ttggatttgatcatgcatctcctatataatatctgccatagctgtgatgctggtgcaata
ttaatttttctacctggatatgatgaaattgttggtttgagggatcgtatcctctttgat
gacaagcggtttgctgacaatacacataggtatcaagtctttatgcttcattcaaatatg
cagacatctgatcaaaagaaggtattaaaaaatccacctgcaggtgtccgaaaaataatc
ctttccaccaatattgctgagacgagcatcactgtcaatgatgttgtgtttgttattgat
tctggtaaggtgaaagagaaatcctttgatgcactgaattttgttacaatgttaaaaatg
gtatggatttccaaagctagtgcaatacagcgcaaaggcagagcgggacggtgtagacct
ggaatttgtttccgtctgtttagtagacttcgatttcagaacatgctggaatttcagacg
ccagaactcttgagaatgccattgcaggaactttgtttacataccaagctgttagcccca
gttaactgcaccattgccgacttccttatgaaagcccctgaaccgcctccagctttaatt
gtgagaaatgctgtgcagatgcttaagacaatagatgcaatggatgcatgggaagatctg
actgaacttgggtatcatttggctgatttgccagtagaaccgcatcttgggaaaatggtc
ctgtgtgcagtggttttgaagtgtctggaccccatccttacaattgcctgcacgctcgct
taccgtgacccttttgtcctgcctacccaggcctctcagaaacgggcagctatgctttgt
aggaaacgcttcactgcagggactttcagtgaccacatggcacttctgagagcatttcag
gcatggcagaaagcacgaagtgatgggtgggagcgagccttttgtgaaaagaattttctt
tcacaagctactatggaaatcattataggcatgagaacacagttgcttggtcagcttaga
gcatcaggttttgttagagcacgaggtggtggtgacattcgagatgttaatacaaactcc
gagaactgggctgttgttaaagctgcattggtagcaggcatgtatcctaatttagtccac
gtggacagagagaatgtaatattgacagggccaaaggaaaagaaagtacgctttcatccc
acttcagttctcagtcaacctcaatacaaaaagattcctcccgccaatggtcaggctgca
gcgattcaggcattgcccacagattggcttatttatgatgaaatgaccagagcccatcga
attgctaatatcagatgttgttcagcagtgacacctgttactgtcctggtgttctgtgga
ccagcaagactggcaagtaacgctcttcaggaaccttcatcctttagagcggatggtatt
cccaatgacagcagtgacagtgagatggaagacagaactactgccaatttggctgctttg
aagcttgatgaatggcttaacttcaaactagagccagaggctgccagtttattgctacag
ctcagacagaagtggcatagtttgtttttacgccgaatgagagcgccatctaaaccttgg
tctcaagtcgatgaagctaccatacgagcaattatagctgttttaagcactgaagaacag
tctgcaggtttacagcagccatctggaattggccagcggccaagacccatgtcttcagaa
gaacttcctttggcttcatcttggagatccaataatagtaggaaaagtacagctgacact
gagtttgcggatggatctactactggagaaagagtactgatgaaatctccatctccagcc
ttacatccacctcagaagtacaaagatagaggaattttacatcctaagcggagcaccgat
gaccggtccgatcaatcatctgtgaaatccacagacagcagcagttacccaagtccttgt
gccagcccctctcctccatcctcagggaagggatcaaaatctccttcaccaagaccaaac
atgcctattcgttacttcataatgaagagtagcaatctgagaaaccttgaaatttctcaa
cagaagggtatctggtctacaacccctagtaatgagcggaagctaaatcgagcgttttgg
gagagcagcatggtttacttggtattttctgttcaaggatctggacatttccagggattt
tctaggatgtcttctgagataggaagggagaagagccaggactgggggtcagctggacta
ggtggagtatttaaagtggagtggatacgcaaagaaagccttccctttcagtttgcacac
catttactcaatccttggaacgacaacaagaaagtacagataagcagagatgggcaggag
ctagaacctcaggttggggaacagttgctccagttatgggaacgccttccattgggagaa
aaaacaacttctgattga
DBGET
integrated database retrieval system
