KEGG   Mus musculus (house mouse): 24116
Entry
24116             CDS       T01002                                 
Symbol
Nelfa, Whsc2, Whsc2h
Name
(RefSeq) negative elongation factor complex member A, Whsc2
  KO
K15179  negative elongation factor A
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    24116 (Nelfa)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmu03021]
    24116 (Nelfa)
Transcription machinery [BR:mmu03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    NELF complex
     24116 (Nelfa)
SSDB
Motif
Pfam: NELF-A_N CathepsinC_exc
Other DBs
NCBI-GeneID: 24116
NCBI-ProteinID: NP_036044
MGI: 1346098
Ensembl: ENSMUSG00000029111
UniProt: Q8BG30
LinkDB
Position
5:complement(34055263..34093615)
AA seq 530 aa
MASMRESDTGLWLHNKLGATDELWAPPSIASLLTAAVIDNIRLCFHRLSSAVKLKLLLGT
LHLPRRTVDEMKAALMDIIQLATLDSDPWVLMVADILKSFPDTGSLNLDLEEQNPNVQDI
LGELREKVSECEASAMLPLECQYLNKNALTTLAGPLTPPVKHFQLKRKPKSATLRAELLQ
KSTETAQQLKRSAGVPFHAKGRGLLRKMDTTTPLKGIPKQAPFRSPTTPSVFSPSGNRTP
IPPSRTPLQKERGVKLLDISELNTVGAGREAKRRRKTLDTEVVEKPTKEETVVENATPDY
AAGLVSTQKLGSLNSEPTLPSTSYLPSTPSVVPASSYIPSSETPPAPPSREASRPPEEPS
APSPTLPTQFKQRAPMYNSGLSPATPAPAAPTSPLTPTTPPAVTPTAQTPPVAMVAPQTQ
APAPVQQQPKKNLSLTREQMFAAQEMFKTANKVTRPEKALILGFMAGSRENPCPEQGDVI
QIKLSEHTEDLPKADGQGSTTMLVDTVFEMNYATGQWTRFKKYKPMTNVS
NT seq 1593 nt   +upstreamnt  +downstreamnt
atggcttccatgagggagagtgacaccggcctgtggctgcacaacaagctgggcgccacg
gacgagctgtgggcgccacccagcatcgcgtccctgctcaccgccgcggtcatcgataac
atccgcctctgcttccaccgcctctcctcggccgtgaagctcaagctactgctcgggacg
ctgcatctcccgcgccgcaccgtggacgagatgaaggcggctctgatggatatcatccag
ctggccacgctggactcagacccctgggtcctcatggttgctgacattctgaagtccttc
cctgacacgggctccttgaatctggaccttgaggaacagaaccccaatgttcaagacatc
ttaggagaacttagagaaaaagtgagtgagtgcgaggcatctgccatgctaccactggag
tgccagtacctgaacaagaatgccctgaccacccttgctgggcccctcaccccaccagtc
aagcattttcagctaaagcggaaacctaagagtgccacgctgcgggcagaactgctgcag
aaatctaccgagacagcccagcagctgaagagaagtgctggggtcccattccacgctaag
ggccgggggctgcttcgaaagatggacactacaacccctctcaaaggcattccgaagcaa
gcccccttccgaagtcccaccacacccagcgtcttcagtccttctgggaaccggactcca
ataccaccttcgaggacgccactgcagaaagaaaggggtgtgaagctgctggatatttct
gagctgaatacagttggtgctggacgagaggcaaagaggaggaggaagactttagacaca
gaagtggtagaaaagcccaccaaggaagagacggttgttgaaaacgctacccctgactat
gctgctggcctggtatccacacagaaacttgggtctctgaacagtgagccaacactgccc
tccacaagttacctgccctctacacccagtgtggtacctgcctcatcttacatccccagc
tctgagactcccccagctccaccctctcgggaagccagccggccacctgaggaacccagc
gctccaagtcccacactgccaacacagtttaaacaaagggcacctatgtataacagtggc
ctgagcccagctacaccagcacctgcagcacctacctcacctctgacacctactactccc
ccagctgtcactcctactgctcagacacctccagtggccatggtggcccctcagacccag
gctccagcccctgttcagcagcaacctaaaaagaacctgtccctcactagagaacagatg
tttgctgcccaggagatgttcaagacggcaaacaaggtcactcggccggagaaggccctc
atcctgggcttcatggctggctctcgagagaacccatgcccggagcagggggatgtgatc
cagatcaagctcagtgaacacacagaggatctgcccaaggcagacggccagggcagtacc
accatgctagtggacacagtgttcgagatgaactacgccacaggccagtggacacgcttc
aagaagtacaagcctatgaccaatgtgtcctaa

KEGG   Mus musculus (house mouse): 27632
Entry
27632             CDS       T01002                                 
Symbol
Nelfe, D17H6S45, NELF-E, RD, Rdbp
Name
(RefSeq) negative elongation factor complex member E, Rdbp
  KO
K15182  negative elongation factor E
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    27632 (Nelfe)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmu03021]
    27632 (Nelfe)
Transcription machinery [BR:mmu03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    NELF complex
     27632 (Nelfe)
SSDB
Motif
Pfam: RRM_1 Nup35_RRM_2 RRM_occluded
Other DBs
NCBI-GeneID: 27632
NCBI-ProteinID: NP_001039328
MGI: 102744
Ensembl: ENSMUSG00000024369
UniProt: P19426 Q3UIA1
LinkDB
Position
17:35069367..35075348
AA seq 367 aa
MLVIPPGLSEEEEALQKKFNKLKKKKKALLALKKQSSSGPASQGGVKRSLSEQPVVDTAT
ATEQAKQLVKSGAISAIKAETKNSGFKRSRTLEGKLKDPEKGPVPTFQPFQRSMSADEDL
QEPSRRPQRKSLYESFVSSSDRLRELGQDGEEAEAPGAGDGPPRGFDWSYEEHGSARSSA
SPPRSRSRDRSHDRSRDRDRDKERDRDRDRDRDRDRDKDKDRDRDRDRDRDRDRERDREG
PFRRSDSFPERRAPRKGNTLYVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEK
MESADQAVAELNGTQVESVQLKVNIARKQPMLDAATGKSVWGSLAVQNSPKGCHRDKRTQ
IVYSDDL
NT seq 1104 nt   +upstreamnt  +downstreamnt
atgttggtgatacctccggggctgagtgaagaggaagaggcactgcagaagaagttcaac
aaactcaagaagaagaaaaaggcattgctggctctgaagaagcagagcagcagcggccca
gcgagccagggcggtgtcaaacgctcactgtcagagcagcctgtggtggacactgccaca
gcaacagaacaggccaaacaactggtgaagtcaggagccatcagtgccatcaaggctgaa
actaagaactcaggcttcaaacgttctcggaccctggaagggaagttaaaggacccagag
aaggggcctgtccccactttccagccgttccagaggagcatgtctgctgatgaggaccta
caggagccatccagacgtccccagaggaaatctctgtatgaaagctttgtgtcttctagt
gatcggcttcgggaactgggacaagatggagaagaagcagaggcccccggggctggtgat
ggcccacctcgaggctttgactggagctatgaagagcatggtagcgcccgctcctcagcc
tcccctccccgaagccgcagcagggaccgaagtcatgaccggagccgagatagggatcgg
gacaaagagagagacagagaccgagatcgagatcgagacagagaccgggataaagacaaa
gacagagaccgggatcgagacagagaccgggaccgagatcgggaacgagaccgagagggc
cctttccgcaggtcagactcattccccgaacggagggcccctcgaaaggggaacacactg
tatgtgtatggagaggacatgacgcccaccctcctccgcggggccttctctccctttgga
aatatcatcgacctctccatggacccacccagaaactgtgccttcgtcacctacgagaag
atggagtctgcagatcaggctgttgctgagctcaatgggacccaggtggaatctgtgcag
cttaaagtcaacatagcccgaaaacagcccatgctggacgctgctactggcaaatctgtc
tggggctcccttgctgtccagaacagccctaagggttgccatcgagacaagaggacccag
attgtgtacagtgacgatctatag

KEGG   Mus musculus (house mouse): 57314
Entry
57314             CDS       T01002                                 
Symbol
Nelfcd, 2410003I03Rik, NELF-D, Th1, Th1l
Name
(RefSeq) negative elongation factor complex member C/D, Th1l
  KO
K15181  negative elongation factor C/D
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    57314 (Nelfcd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmu03021]
    57314 (Nelfcd)
Transcription machinery [BR:mmu03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    NELF complex
     57314 (Nelfcd)
SSDB
Motif
Pfam: TH1
Other DBs
NCBI-GeneID: 57314
NCBI-ProteinID: NP_065605
MGI: 1926424
Ensembl: ENSMUSG00000016253
UniProt: Q922L6
LinkDB
Position
2:174257623..174269298
AA seq 582 aa
MGEDYFGNASEWGEEADGGQHQEDDSGEGEDDAEVQQECLHKFSTRDYIMEPSIFNTLKR
YFQAGGSPENVIQLLSENYTAVAQTVNLLAEWLIQTGVEPVQVQETVENHLKSLLIKHFD
PRKADSIFTEEGETPAWLEQMIAHTTWRDLFYKLAEAHPDCLMLNFTVKLISDAGYQGEI
TSVSTACQQLEVFSRVLRTSLATILDGGEENLEKNLPEFAKMVCHGEHTYLFAQAMMSVL
AQEEQGGSAVRRVAQEVQRFAQEKGHDASQITLALGTAASYPRACQALGAMLSRGALNPA
DITVLFKMFTSMDPPPVELIRVPAFLDLFMQSLFKPGAKINQDHKHKYIHILAYAASVVE
TWKKNKRVSIGKDELKSTSKAIETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVL
KWVDWTVSEPRYFQLQTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVME
QLELKKTLLDRMVHLLSRGYVLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSD
FVQLFLPILENDSIAGTIKAEGEHDPVTEFIAHCKSNFIVVN
NT seq 1749 nt   +upstreamnt  +downstreamnt
atgggagaagactacttcgggaatgcctcagagtggggcgaagaggcagacggcggccag
catcaggaagatgattccggagaaggagaggacgatgctgaggtgcagcaggaatgcctg
cataagttttccacccgggactacatcatggagccctccatcttcaacactctgaagagg
tatttccaggcaggagggtctccagaaaacgtcatccagctcttatctgagaactacacg
gcagtggcccagacagtgaacctgctggctgagtggctcattcagacaggcgttgagcct
gtgcaggtgcaggagactgtggaaaaccacttgaagagtttgctgatcaagcacttcgac
cctcggaaagcagattctattttcactgaagaaggagagaccccagcttggcttgagcag
atgatcgcacacacaacatggagagatctgttttataagttggccgaggcccatcctgac
tgtttgatgctcaacttcactgtgaagctcatttctgatgcggggtaccaaggggagatc
accagcgtgtccacagcctgccagcagttggaagtgttctccagagtgcttcggacctct
ctagccacgatcttggatgggggagaagaaaaccttgagaaaaatctccctgagtttgca
aagatggtatgccatggcgagcacacgtacctgtttgcacaggccatgatgtccgtgctg
gcacaggaggaacagggtggttctgcagtgcgcagggtcgctcaggaagtccagcgcttc
gcccaggagaagggccatgatgccagtcagatcacgctggccttgggcacagctgcctcc
tacccccgagcctgccaagcgcttggcgccatgctgtccagaggagccctgaatcctgca
gacatcacggtcttgttcaagatgttcaccagcatggaccctcctcccgtggaactcatc
cgggtgccggccttcctggacctgttcatgcagtcgctcttcaagccaggggccaagatc
aaccaggaccacaaacacaagtacatccacatcctggcttacgctgccagtgtggttgag
acctggaagaagaacaagcgggtcagcattggcaaagacgagctcaagtccacgtcaaag
gctatcgagactgtccacaacctgtgctgcaacgagaacaaaggggcctctgagctggtg
gctgagctgagcacactttatcagtgcattcggtttccagtggtggcgatgggcgtgctc
aagtgggtagattggaccgtatcggagccaaggtacttccagctgcagactgatcacact
ccagttcacctggccttgttggatgagatcagcacctgccaccagctcctgcacccccag
gttctgcagctgcttgttaagctttttgagacagagcactcccagctagacgtgatggag
cagctcgagttgaaaaagaccctgctggacaggatggtgcacctgctgagccgcggctac
gtcctgccggtggtcagttatatccgcaaatgtctggagaagctggacacggacatctcc
ctcatccgctactttgtcactgaggttctggatgtcatcgcccctccgtacacctcagac
tttgtgcagcttttcctccccatcttggaaaatgacagcatcgcgggcaccatcaaggca
gagggcgagcatgaccccgtgacggagttcattgctcactgcaagtcgaacttcatcgtg
gtgaactga

KEGG   Mus musculus (house mouse): 58202
Entry
58202             CDS       T01002                                 
Symbol
Nelfb, A730008L03Rik, Cobra1, Nelf-b
Name
(RefSeq) negative elongation factor complex member B
  KO
K15180  negative elongation factor B
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    58202 (Nelfb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mmu03021]
    58202 (Nelfb)
Transcription machinery [BR:mmu03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    NELF complex
     58202 (Nelfb)
SSDB
Motif
Pfam: COBRA1 BatA
Other DBs
NCBI-GeneID: 58202
NCBI-ProteinID: NP_067368
MGI: 1931035
Ensembl: ENSMUSG00000013465
UniProt: Q8C4Y3
LinkDB
Position
2:complement(25089724..25101501)
AA seq 628 aa
MEAAGERGLGGPRGTVERASGAPSGSATAPAERGGDGVHSRASAGASAMFAGLQDLGVAN
GEDLKETLTNCTEPLKAIEQFQTENGVLLPSLQSALPFLDLHGTPRLEFHQSVFDELRDK
LLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLQPVVMCVMKHLPKVPEKKLKLVM
ADKELYRACAVEVKRQIWQDNQALFGDEVSPLLKQYILEKESALFSTELSVLHNFFSPSP
KTRRQGEVVQKLTQMVGKNVKLYDMVLQFLRTLFLRTRNVHYCTLRAELLMSLHDLDVSD
ICTVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAIN
TLSLSTIRHLQELVSQETLPRDSPDLLLLLRLLALGQGAWDLIDSQVFKEPKMEAELITK
FLPMLMSLVVDDFTFNVDQKLPAEEKASVTYPNTLPESFTKFLQEQRMACEVGLYYVLHI
TKQRNKNALLRLLPGLVETFGDLAFSDIFLHLLTGSLVLLADEFALEDFCSSLFDGFFLT
ASPRKENVHRHVLRLLLHLHARVAPSKLEALQKALEPTGQSGEAVKELYSQLGEKLEQLD
HRKPSPTQAAETPALDLPLPSVPAPATL
NT seq 1887 nt   +upstreamnt  +downstreamnt
ctggaggcggcgggcgaacggggcttggggggtcctcgtggcaccgtggagagggcttct
ggggctccgtcagggtccgctacggctccagcggagcgcggtggggatggggtacacagc
cgagcgtccgccggagcctccgccatgttcgcggggctccaggacctgggcgtggccaat
ggcgaggacctgaaagagaccctgaccaactgcaccgagcctctcaaggccattgaacaa
tttcagacagagaatggcgtgttgctgccttccctgcagtcggccctgcccttcttggat
ctacacgggacaccgcggctggagttccatcagtcagtgtttgatgaactacgtgacaaa
cttctggaacgagtgtcagcaattgcctctgagggaaaggcagaggagaggtacaagaag
ctggaagaccttctggaaaagagcttttctttggtcaagatgccatccctacaaccagtg
gtgatgtgtgttatgaaacacttgcccaaggttcctgagaagaagctgaagctggtgatg
gctgacaaggagttgtaccgggcatgtgctgtggaagtgaagaggcagatttggcaagac
aaccaggctctctttggtgatgaagtctcaccactgctgaagcagtatatcctagagaaa
gagagtgcgctcttcagcacagagctctctgtgctgcacaacttcttcagcccttccccc
aagacccggcgccaaggagaggtggtgcagaagctgacgcagatggtagggaagaatgtg
aagctgtacgacatggtgctgcagttcctgcgcacactgttcctgcggaccaggaatgtg
cactactgcacgttacgagctgagctgctcatgtctttgcatgacttggacgtcagtgac
atctgcactgtggatccctgccataagttcacctggtgcctggatgcctgcatccgggaa
cggtttgtggacagcaaaagagcccgggagcttcagggatttcttgatggtgtgaagaag
ggccaggaacaagttttgggggatttgtctatgatcctgtgcgacccctttgccatcaac
acactgtccctgagcaccatcaggcacttgcaggagctggttagccaggagacactgccc
agggatagtcccgacctcctcctactacttaggctgctggcactgggccaaggtgcatgg
gacttaatagatagccaggtcttcaaggagcctaagatggaggcagagctcatcaccaag
ttcctgccgatgctcatgtccctcgtggtggatgacttcactttcaacgtagatcagaag
cttccagctgaggagaaagcctcagtcacataccccaacacacttcctgagagtttcacc
aagtttctgcaggagcagcgcatggcttgtgaggtgggactatactacgtcctacacatc
accaagcagagaaacaagaatgctctcctgcgcctgctgcctggacttgtggaaacgttt
ggtgacctggccttcagtgacatctttctccacctgctcactgggagcctggtactgctt
gctgatgaatttgccctggaggatttctgcagcagcctctttgatggcttcttcctcact
gcctctcccaggaaggagaatgtgcaccgtcatgtgctgaggcttctcctccacttgcat
gcaagagtggccccttccaagctggaggcattgcagaaggctctggagcccacaggccag
agcggggaggccgtgaaggagctctactcccagcttggtgagaagttggagcagttagac
catcgaaagcccagtcctacccaagctgcagagacaccagcactggatctgcctcttccc
agcgtgcctgctccagccacactgtga

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