Mus musculus (house mouse): 271564
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Entry
271564 CDS
T01002
Symbol
Vps13a, 4930425F11, 4930516E05Rik, 4930543C13Rik, 9930023P20, Chac, Chorein, D330038K10Rik, mKIAA0986
Name
(RefSeq) vacuolar protein sorting 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
mmu
Mus musculus (house mouse)
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mmu04131
]
271564 (Vps13a)
Membrane trafficking [BR:
mmu04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
271564 (Vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
271564
NCBI-ProteinID:
NP_766616
MGI:
2444304
Ensembl:
ENSMUSG00000046230
UniProt:
Q5H8C4
Q6P6M9
LinkDB
All DBs
Position
19:complement(16592730..16758433)
Genome browser
AA seq
3166 aa
AA seq
DB search
MVFESVVVEVLNRFLGDYVVNLDESQLSLGIWKGAVALKNLVIKENALHELDVPFKVKVG
HIGSLKLKIPWKNLYTQPVEAVLEEIFLLIVPSSRIQYDPIKEEKQLMETKQQELKRIEK
AKQKVFDKEKPREEKQDTFTEKLVTQIIQNLQVQISSIHIRYEDDITNGDKPLSFGISLQ
NISLQTTDQYWIPCLHDNTEKLVRKLIRLDNLFAYWNVNSEMFYLNDYDESLKALKNGIV
NENIVPEGYDFVFRPISASAKLQMNRRSDFDFSDPKINLAVDLHTIAIEFNKPQYFSLME
LLESIDMMTQNQPYRKFKPSVPLHLHAKEWWAYAIHSILEVNVCPSLRMWSWEHIRNHRY
KMKRYREFYKKKLTSKKPSPEILMSLEELEKTLDVFNITIARQQAEVEAKKAGYKIYKEG
VKDPEDNAGWFGWLWTWSESNANQQQDVKPGILEEMLTPEEKSLLYEAIGYSETAVDPTL
PKTFEALKFFVHLKSMSIVLRENHQKPELLNVVVEGLSTSVVQRPGAQAIKFETKIDSFH
ITGLPDDFKKPHLLSSLDDTSLLQITFEINPLNETVAQRCTIEAEPLEIIYDARTVNSIV
EFFRPPKDVHLAQLTSVTLTKLEEFRAKTATGLLYVIETQKVLDLRINVKASYVIVPQYG
NFSPTSNLLLLDLGHLKVSSKRRSLLPDVRPSEASLEDIMHRAYDSFDIQLTSIQLLYSR
VGDNWKEARKLNVSTQHILIPMHVNVELSKAMVFMDIKMPKFKISGKLPLVSLRISDKKL
QGIMELLGSIPKPEPVTDVSAPARSFQIQASALPVSHISQKLIPLLEQPVTEDDSEEEFF
DAPCSPLEECPQVSCRDKCTRQKKLQKKDCVMNLIQLRMRFEVAEVSIQFYHLVGDCELP
VLEMGALGLGTEAEFRTFDLKGSAFLKELWLKCPEYLDENKKPVYLITTLDNTMEDLLTL
EFMKVEKNAPNLNSTYNNVLQLIKVNFSSLDIHLHTEALLNTMNYLNNILPELREKSASV
SAAEPEDKGDIIKKLALKLPTNEDIITLQLLAELSCLQIFIQDQKQNISEIKIEGLDSEM
IMKPLVTEINAKLRNIIVLDSDKMAIYKKALYITGKEVFSFKMISYMDATAGYAYTDMSV
VDIRVHLTVGCIEVVFITKFLYSILAFIDNFQAVKDALAEATVQAAEMAADGVKELARKS
SRFALDVNIKAPVVLIPQSPVSQNVFVADFGLITMKNIFVTVTETQSNIPPVIDLITIKL
SKMRLYRSQFRNDTYQEVLDLLLPLNLEVIVERNLSWEWYKEVPCFNIKAQLKPMEFILS
QEDLTTVFQTLHGNIWYGQDLSAPSSANKDPETMTSGVTSPPDHSPATVVTAAVVEVHPQ
ASQAHTMLNVSFQTDYLTMALYSPGPDEASFTDVRDPSLELAEFKLENIISSLKIYTDDS
TVFSFSVKNCILDDKRSHVMKATPRMIGLTVGFDKKDMVDIKYRKIKTFVVTDAVVQEMY
VCASVEFLMTVAHIFFDAYMTSTALETSVQTRTTREAPAQELGKWEMNILIKNPEIVFVA
DMTRNDAPALVITTQCEICCKGEPTSNTVTAAIKDLQVRACPFLPVKRKGKVTTVLQPCD
LFYQATQLGRDPQMIDISVKSLTLKVSPVIINTIITITSALYTTKETVPEENTSNIAHLW
DKKDTKNLKMWFLEESNESEKVVPTNEVMPGGETLNLRIDSIFIVLEAGIGHRTVPMLLA
KACFSGESKNWLSLINLHCHLELEVHYYNEMFGVWEPLLEPLEIDQTDDFRPWNLGIKMK
KKAKEAIVESDSEAENYKVPEYKTAISFYSRDQLNITLSKCGLVMLNNLVEAFTEAATGS
SSVFLRDLAPFMIFNSLGLTVSVSPSDSFSVLNVPLAKSYELKNDESLSMDYVRTKDNDH
FNAMTSLSSKLFFILLTPANHSVADKIPLTKVGRRLYTVRHRESGVERSIICQIDTVEGS
KKVTIRSPVQIKNHFSIPISVFEGDTLLGIASPENEFNIPLASYRSSLSLVPEDQDYQLC
EGIDFEEIIKYDGQLLKKKCRSTNPSKKSFVINIVPEKDNLASLSVYSEDGWDLPYVLHL
WPPILIRNLLPYKVAYYIEGIENTVVTLSEGHSSQIYNVEMDQAKLHLKLLDYLNHDWKS
EFYIRSSQQDINFINFTCLTEMEKSDLDIAIHMTYNTGQTVVAFHSPYWMVNKTNRMLQY
KADGIHRKHPPNYTKPVLFSFQPNHFFNNNKVQLMVTDSELSDQFSIDTVGSHGAIRCKG
LKMEYQVGVTINLSSFNITRIVTFIPFYMIKNKSKYHISVAEEGSDKWLSLDLEQSIPFW
PENASNILLIQVERSEDPPKRIYFNKQDNCILLRLNNELGGIIAEVNLAEHSTVITFSDY
HDGAATFLLINHTKSDPVQYNQSSLGEIEDSLPPGKAVYYTWADPVGSRKLKWSCGQSYG
EVTHKDDMMTPISVGKKTIYLVSFFEGLQRIILFTEDPRVFKVTYESEKAELAELEVVLA
LQDVGISLVNNYTKQEVAYIGITSSDVVWEAKPKKKARWKPMSVKHTEKLEKEFREYTEA
SPLEDKVVELDNIPVRLTPSGNDMKILQPHVIPVRRNYLPALKVEYNTSAHQSSFRIQIY
RIQIQNQIHGAIFPFVFYPIKPPRSVTMDSAPKPFTDVSIVMRSAGHSQISRIKYFKVLI
QEMDLSLDLGFVYALADLVTKAEVTEKTEVEHFHKDVEAFEQEYEVVSSVDQSQVNLFEY
FHISPIKLHLSVSLSSGRDEAKDSEQHGGLIPVHSLNLLLKSIGATLTDVQDVVFKLAFF
ELNYQFHTTSELQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGVEAFFYEPY
QGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITSAMAKGVAAMTMDEDYQQKRREA
MNKQPAGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVTR
PTGGIIDMASSTFQGIKRATETSEVESLRPPRFFNEDGVIRPYRLRDGSGNQMLQVMENG
RFAKYKYFTHVMINKTDMFMITRRGVLFVTKGTFGQLTCEWQYTFDEFTKEPFIVHGRRL
RIEAKERVKSVFHAKEFGKIVNFKTPEDARWILTKLEEAREPSPRL
NT seq
9501 nt
NT seq
+upstream
nt +downstream
nt
atggtattcgagtcggtggtcgtggaagtgttgaaccggttcctgggagactatgtggtg
aacctggacgagtcccagctctccctgggcatttggaaaggagctgtggccctcaagaac
cttgtaattaaagaaaatgcattgcatgaattggatgtaccattcaaagttaaagttggt
catataggtagtcttaaacttaaaattccatggaaaaacctttatactcaaccagttgaa
gctgttttggaagaaatttttttactcatagtgccttcttctagaatacagtatgatcct
atcaaagaagaaaagcaactcatggaaacaaagcaacaggaactaaaaagaatagaaaaa
gcaaaacagaaagtatttgataaagaaaagcctcgggaggagaaacaggacacgtttaca
gaaaagttagttactcagatcatacagaaccttcaagtgcaaatctccagcatccatatt
cgttatgaagacgatatcacaaatggagacaaaccactctcttttggtatttcccttcaa
aatatcagccttcagacaactgatcaatactggatcccatgtttacatgataatactgaa
aagctagtccggaagctaatccgattagataatctctttgcttactggaatgtgaactct
gagatgttttatctgaatgattacgatgaatcgctgaaagccttgaaaaatggtattgtg
aatgaaaatattgttccagaaggttatgattttgtttttcgacctatatctgctagtgcc
aaacttcagatgaatcgacgatcagattttgacttttctgaccccaaaataaacctggct
gttgatttacataccatagcaattgagtttaataaaccacagtatttcagcctcatggag
cttctcgagtcaattgacatgatgacacaaaaccagccgtacagaaagttcaagcccagt
gtgcctctccacctccacgccaaagagtggtgggcttatgctatacatagtattcttgaa
gtaaatgtttgtcccagtttacggatgtggtcgtgggagcatattagaaaccatagatac
aaaatgaaacgatacagagaattttataagaaaaaattaacaagtaagaagccatctcct
gaaattctcatgtctttggaggagttggagaaaactttggatgtttttaatataaccata
gctagacaacaggcagaagttgaggcaaagaaagctggatataaaatttacaaagaagga
gtcaaagatccagaagataatgcaggatggtttggctggttgtggacttggtcagaatca
aatgctaatcaacaacaagatgtgaagcctggaattctggaagaaatgttgacacctgaa
gaaaagtcgttactttatgaagcaattggttatagtgaaacagcagttgacccaaccttg
ccaaaaacatttgaagccttgaagttttttgttcacttgaaaagcatgtctattgttcta
agagaaaatcaccaaaagccggagctgttaaacgttgtagtggaaggacttagtacttct
gttgtgcaaagaccaggagcacaagccataaaatttgaaaccaaaattgattcatttcat
attactggcttaccagatgatttcaaaaaaccccacctactgtcttcattggatgatacg
tcactcctccagattacatttgagataaatcctttaaatgaaactgttgctcagaggtgc
accatagaggctgagcctctagagataatatatgatgcaaggacagtcaatagtatagtg
gagttcttcagacctccgaaagatgtccatctagcccaacttacttcagtaactttgaca
aaacttgaagaatttcgagcaaaaacagcaacaggtttgctgtatgttattgaaacacag
aaagttcttgatctcagaattaatgtaaaggcttcatatgttattgtcccacaatatgga
aattttagccctacgtcaaatctacttctcctggatcttggtcatttaaaggtgtcaagt
aagcgtcgatcactgctgccagatgtgagacccagtgaggccagccttgaagatataatg
cacagagcgtatgactcctttgatattcagcttacgagcatacagttgctctacagtaga
gtgggtgataattggaaagaggcacgaaagctcaatgtatctacacagcatattttgata
cctatgcatgtcaatgtggagctctctaaagccatggttttcatggatatcaagatgccc
aaattcaagatttctggaaagttacctcttgtttcattacgaatttcggataaaaaactg
caaggcattatggagttgttgggaagcattccaaagcctgaacctgtaactgatgtatct
gcccctgccagatcattccagattcaagcatctgctttgccagtatcacacatttctcag
aagttaatccctttattggaacagcctgttactgaagatgactcagaggaagaatttttt
gatgcaccatgtagtcccttggaggagtgtcctcaagtgtcatgtagagataaatgtact
cgacagaaaaaattacaaaagaaagattgtgtgatgaatcttattcaacttaggatgaga
tttgaagtagcagaggtgtccattcagttttatcacctggtgggagactgtgaactacct
gtgctggaaatgggtgctttaggattgggaacagaagctgagtttagaacatttgacttg
aaaggaagtgcctttttgaaagaattatggctaaaatgtccagaatatttagatgaaaac
aagaaaccagtttatttgatcacgaccctggataacacaatggaagatttattaacattg
gaattcatgaaggttgaaaaaaatgcaccaaatttgaatagtacctataacaatgtttta
caacttattaaggtgaatttttcctctttggatattcatttacacactgaagcacttctg
aatacaatgaattatcttaataatattcttccggaattaagggaaaaatctgcctcggtg
tctgctgcagagccggaagacaaaggggacatcattaaaaaacttgctttaaagctaccc
acgaatgaagatattattaccttgcagcttttggcagaattatcttgtctacagattttt
attcaggatcagaaacaaaacatttctgaaattaaaattgaagggcttgattctgagatg
attatgaaacctctagtcactgaaataaatgcaaagctaaggaatataattgtgttagat
tctgataaaatggctatctacaaaaaggctctttatatcactggaaaagaagttttcagc
ttcaaaatgatttcttacatggatgcaactgctggctatgcatacacagatatgagtgtg
gttgacattcgggttcatttaactgttggttgcattgaagtagtgttcatcacaaaattc
ctgtattctatattggcatttatagataattttcaagcagttaaagatgccttggctgaa
gcaactgttcaagcagcagagatggctgctgatggtgtaaaggaactggctcgaaagagc
tctaggtttgcattggatgttaacatcaaggctccagttgtgctcattccacagtctcca
gtgtctcagaacgtttttgttgctgattttggattaattacaatgaaaaatatatttgtt
actgtaacagagacccagagtaatatcccacctgtaattgatttgataacaataaagttg
agtaaaatgagactatacaggtctcagtttaggaatgatacataccaggaagtgctggac
ctgctactacctttgaacttggaagtgattgtcgaacggaacttatcctgggaatggtac
aaggaagtcccttgttttaatataaaagctcagctaaagcccatggagttcattcttagt
caggaagacttaacaaccgtctttcaaacattgcatggcaatatatggtatggacaagat
ctgagtgctccatcttctgcaaataaggacccagagaccatgaccagtggggtcaccagt
cctcctgaccattcgccagctactgtggtgaccgctgctgtggtggaggtgcacccacag
gcttctcaagcgcacacgatgctgaacgtgagcttccagaccgattacctcaccatggca
ctctacagtccggggccggatgaggcctcctttacagatgttcgcgatccttctctggaa
cttgctgaatttaagttggagaatattataagtagtttaaaaatatatacagatgattct
acagtcttttctttctcagtaaaaaactgtattttagatgataaaaggtcacatgtcatg
aaagccactcctagaatgataggattgactgttggctttgacaagaaggacatggtggat
ataaagtatagaaaaatcaaaacttttgttgtgactgatgcagttgtccaagaaatgtac
gtttgtgcgagtgtggagtttctgatgactgttgcccatatcttttttgatgcctacatg
actagtacggctttagaaaccagcgttcaaacaaggactactagagaagcacctgcacag
gaattagggaagtgggaaatgaatattcttattaaaaatccagagattgtgtttgtggct
gacatgacaagaaacgatgctcctgccttagtcattacgacacagtgtgaaatttgctgc
aaaggtgaacctacaagcaatacagtgactgctgccattaaagatctccaagtcagagcg
tgcccatttcttccagtcaagagaaagggcaaagtcaccactgttttgcagccttgtgac
ttgttttatcaggctactcaattaggtagagatccacaaatgattgatatatcagtaaaa
tctcttacgctaaaggtttcaccagttatcataaataccataataactattacttcagca
ctttacacaactaaggaaactgtcccagaagaaaacacttctaatatagcacatttatgg
gacaagaaggatacaaagaatctaaaaatgtggtttcttgaagaatcaaatgaaagtgaa
aaagtagttcccacgaatgaagtgatgccgggaggagagacactgaacttgcgtattgat
tctatttttattgttctggaggctggaatcggtcatagaacagtgccgatgctgttggca
aaggcgtgcttctcgggggaaagcaaaaactggctctctctaatcaatcttcactgtcac
ctggaactggaagttcactattataatgaaatgtttggtgtttgggaacctttactggaa
cccttagaaattgatcagactgatgattttagaccctggaatctgggcatcaagatgaaa
aagaaagcaaaagaggccattgttgagtctgacagtgaagcagaaaactacaaagtacca
gaatataagactgccataagtttttattctagagaccagttaaacattacattatccaaa
tgtggccttgtgatgttaaataatttagttgaggcgtttactgaagctgctactggatcg
tcatctgtcttcctaagagatctagcaccattcatgattttcaattctcttggacttact
gtctctgtctcaccaagcgattcttttagcgttctcaacgttcctttggcaaaatcatat
gaactgaaaaatgatgagagtttaagtatggattatgtacgaacgaaggacaatgatcat
ttcaatgcaatgaccagcctaagcagcaagctcttcttcattctccttacgcctgctaac
cactctgtcgctgacaagatccctttaacaaaagtgggacgccgtctgtacactgtaaga
cacagagaatctggggtcgaaagatctatcatttgtcaaattgacacagttgaaggaagt
aagaaggtaacaatccgctcaccagtgcagattaagaatcatttttcaatcccaatttcc
gtttttgaaggagatactttattgggaattgcttcacctgaaaatgaatttaacatacca
ttagcatcttaccgatcatccctttccctggtgccagaagaccaggactaccagctatgt
gaaggaatcgactttgaagaaatcataaaatatgatggacagcttctgaagaagaaatgt
agatctacaaacccttctaagaaatcatttgttattaatattgtcccagaaaaggataat
ttggcttccctgtcagtgtattcggaagatggttgggacttaccatatgtcctgcacttg
tggccacccatcctcatccggaaccttcttccctacaaagttgcttattacattgagggc
attgagaacactgttgttactctaagtgaaggacattcatcacagatctataatgtagaa
atggaccaagccaagctacacttaaaattactcgactatcttaatcatgattggaaaagt
gaattttatataagatctagtcaacaagacatcaatttcatcaactttacctgtctcaca
gaaatggaaaagagtgacttggatattgctatccatatgacttacaacactggtcagaca
gttgtggcatttcatagtccgtattggatggtcaataaaaccaatcggatgctacagtac
aaagcagatggaattcaccgaaagcatccacctaattatacaaaaccagttctcttttcc
tttcagccaaatcacttttttaacaacaataaggttcagcttatggtaactgatagtgag
ctttcagatcagttttcaattgatactgttggtagtcatggagccattagatgcaaaggt
ctgaaaatggaataccaagttggtgtcactataaatctcagcagttttaacattaccaga
attgtgacatttattccgttttatatgattaaaaacaaaagcaaataccatatatcagta
gcagaagaaggaagtgataaatggctttctcttgacttagagcagagtatccccttttgg
cctgagaatgcctccaatattcttcttattcaagttgagaggagtgaagatcctccaaaa
aggatatattttaacaagcaagataattgtattttattgagactgaataatgagcttgga
ggtattattgcagaagttaatttggctgagcactctacagttattacattttcagattac
catgatggagcagctacattcctattaataaatcataccaagagtgaccctgttcagtac
aaccaaagttctctcggtgaaatagaagattctcttcctcctggaaaagcagtctattat
acatgggctgacccagtgggctctagaaagctgaagtggagctgtgggcaaagctatggt
gaagtaacccataaggatgatatgatgacgcccataagtgtggggaaaaaaaccatttat
ttagtgtcgttctttgaaggcctgcagcgtattattttattcactgaagatccaagagtg
tttaaagtaacgtatgaaagtgaaaaggcagagttagcggagctggaagttgtgctggcg
ttacaggatgtcgggatttcacttgtcaataactatacaaagcaagaagtagcctacata
ggcattacaagttctgatgtggtttgggaggcaaaaccaaagaagaaggccaggtggaag
cccatgagtgtgaagcacacagagaagctggagaaggagttcagggagtacacagaggcc
tcgcccttggaggacaaagtggtcgagttggacaacattccggttcgtttaacacctagt
ggcaatgacatgaaaattctgcaaccacatgtgatacctgtccggagaaattacctgcca
gcactaaaagtagaatataacacatctgcacatcagtcgtcattcagaattcagatttat
agaatacagatccaaaatcagattcatggtgctattttccctttcgtgttttatcctatt
aaacctccaagatctgtcaccatggactcagcaccaaagccgtttacagatgtcagtatt
gtcatgagatctgcaggacattcccaaatatcacgcattaagtatttcaaagtgttgatt
caagaaatggacctcagtttggatcttggatttgtgtatgccctagcagaccttgtcaca
aaagctgaagtgactgagaagacagaggtggaacattttcataaggatgtagaagcattt
gaacaagaatatgaagttgtttcatcagtagatcaatcacaagtcaatctctttgaatat
tttcatatatctcctatcaagttgcacttgagtgtttccctgagctctggtagagatgaa
gcgaaagactcagaacaacatggaggactaattcctgttcattcgttaaatcttttgctg
aagagtattggtgccaccctcacagatgtacaagatgtagtttttaagcttgcctttttt
gaactcaactaccagttccatacaacatctgaattgcaatctgaagtaataagacactat
tccaaacaggctattaaacaaatgtatgtactcattcttggacttgacgtcttgggaaat
ccctttggcttaattagagaattttcagaaggagtagaagcgtttttttatgaaccttac
cagggggctatccagggtcctgaagagtttgtggagggaatggcgctaggattgaaagca
ctagttggtggagccgttggtgggctagctggtgctgcctccaaaatcaccagtgctatg
gctaaaggagtagcggccatgaccatggatgaagactaccagcagaagaggagagaagca
atgaataagcagcctgctggccttcgagagggcatcactcgaggaggaaaaggccttgtc
tctggttttgtaagtggcattacagggattgttacaaagccaattaaaggtgctcaaaag
gaaggagcagcaggtttcttcaaaggtgttggaaaaggtttagttggagcagtgacaagg
ccaacgggtggcatcatagacatggccagcagtacctttcagggaatcaaaagagctaca
gagacttctgaagtagagagtttacgacctcccagattctttaatgaagatggagtcatc
agaccttacaggttgcgcgatggttcaggaaatcaaatgttacaggtcatggaaaatgga
agatttgcaaaatacaagtattttacccatgtcatgatcaataaaacagatatgttcatg
ataacaagacgtggcgtgttgttcgtaacaaagggaacatttggacagcttacatgtgag
tggcagtacacttttgatgaattcaccaaagagccgttcattgtccatgggagaagactg
cgcattgaagccaaggaacgggtgaagtctgtattccatgccaaagaatttggaaaaatc
gttaacttcaagactccagaagatgctaggtggatcctcacaaagctggaagaagcgaga
gaaccatccccgagactgtga
DBGET
integrated database retrieval system
