Mus musculus (house mouse): 353326
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Entry
353326 CDS
T01002
Symbol
Rtl1, 6430411K18Rik, Mar, Mart1, Mor1, Peg11
Name
(RefSeq) retrotransposon Gaglike 1
Organism
mmu
Mus musculus (house mouse)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RT_RNaseH_2
DUF4939
Retrotrans_gag
RT_RNaseH
Ty3_capsid
gag-asp_proteas
RVT_1
Asp_protease_2
RVP_2
Asp_protease
Motif
Other DBs
NCBI-GeneID:
353326
NCBI-ProteinID:
NP_908998
MGI:
2656842
Ensembl:
ENSMUSG00000085925
UniProt:
Q7M732
B4YB44
LinkDB
All DBs
Position
12:complement(109531141..109570852)
Genome browser
AA seq
1744 aa
AA seq
DB search
MIEPSEDSFETMMELKNPSSKQMESSEGSSNTVEETPGSSGAQAGAQAGAQAEAQAETQV
EAQAEAQAEAQVEAQVEAQAGSDSGPAQEEKEPPSGPLKEMQELPTNLLQEVEEPSSGPH
QEMQELPTDLLQEVEEPSSGPHQEMQELPTDLLREVEEPSSGPYQEMQELPTDLLREVEE
PSSGPYQEMQELPTDLLREVEEPSSGPYQEMQELPTDLLREVEEPSSGPYQEMQELPTDL
LREVEEPSSDPCEASSNDLPQDMEESSDDGSNQESSDGSNHELSNGSNHESSFGSNPESS
DVSNLESSGGSNQESSDGSQKESSYDSNPELSDNSNQELSDNSNQESSDSSNQSSDISNQ
EGSEPLSEASDYSMDETINSSETQSDQDDTDLGDDEEEEEEEGGEEEGQPKNSPEEVVAT
MGNVISLFLRMQDLKEQQRVAERLMMQAINEGRLPSLRPFSGDRRDYHEFVVLCQMTMQN
YPSMLYNDELRVKFVIRHLTDLALEWANDLVEQNSPVINNFSAFLEAMSEKFEYRQTLRV
AEDAMFNIRQGNRCAADYINEFRGLIPTLGWPDEVLQAHLCQGLNEEIRHYLFRIPQPNS
LDNLIVLVLQLEEKLAERRALLRLPPESRPRSVAWMDAPAPEKWRVSSWLPNEFHPDIDR
DHLFLLLLVRVDPYHSVAVRALVDSGAEGNYMDERFAQEHYVELYEKPYPQIIQGVDGIP
IGNEPVWLCTEPLVCVHQKHYEYIEFDILPSPNFSIVLGMKWLRTHAPEVDWMRGRCTFH
SPYCLRNCFTPPPPCIALETYSISLLPGLPHTYSDLADVFNPREADDETSDQPSSDGSDD
LSESEPSELQQAGDSDQSGVFYESGARETLEPVSARMQEKARQQEKAREQEEYWILYDML
TDRQDYTQMVPELFDQLHGAAWFTKLELLGIKESEMRHTVTHTEDTWRASFGFGLHQMRC
YRPFTMNSYSDEGNNIVHFILKDILGLFVICHGREVLVYSMSQEEHSQHVRQVLVRFRYH
NIYCSLDKTQFHRQTAEILGFNISPKGVKLNKNLMNLIVGCPVPGSRRCLQSVIDLVYPY
RHFVENFAVIAAPLVRQLLSSEPYYWGEEEQEALESLKRAFRKSPVLYHPKPQNPFYLET
DITGSFLSASLVQTDDETGKKSTCAFYSRPLSTMEVEYPRVEMRILPIRAAFMVWCRYLE
NTEEPIMILLNTEDLASLNNDRLTVLLPGHWVFFFSHFNFGVMEMPAEGDTQALFRRCWN
QRGFRARFLRPLLLMSIRANLRYFDRSSETEDKEDDEEEEEEDGEEEEGEEEEDGEEEEG
EEEEDGEEEEEEEEDDEEEEGEEEEDGEEEEGEEEEDGEEEEGEEEEDGEEEEGEEEGEE
EEEGEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEDEEEEDEEEEDEEVPSM
VRELLAAIPMDHILNGLLAHFSVAQIRAVVLNFFRGLLYWKSLLGVAAVLVMLRARQPLS
PVPAPNLEVARPQHRHTLRLILDSTLIASSGMATAIAQLLSQMPPLVGANTLPARELAEL
FLGPRCWHRNALHSQPPRGMRFTPGFWLTLCEFFGVRVNPEDDVFPDPYQHRYLELHVVG
DEDVVLREALQDDLQRYRQCGLHDGLQDTSQDAQDNDVQEDLFGDQEAVTFRPRNLLDPE
VLDFLNNRLLYTLGTDGRLTLLSRDQVAQALTRFLAMASRMALPSPAREQARLEELSDSD
DELD
NT seq
5235 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaccctctgaagactcatttgagacgatgatggagcttaagaatccatcatca
aaacaaatggagtcctccgagggctcatccaacaccgttgaagagacaccaggcagcagt
ggagcccaggcgggggcccaggcaggggcccaggcggaggcccaggcggagacccaggtg
gaggcccaggcggaggctcaggctgaagcccaggttgaggcccaggttgaggcccaggcg
ggctcagatagtggcccagcccaggaagaaaaggagccacccagtggccccctcaaggaa
atgcaagagctgcccactaatctactccaagaagtggaggagccatccagtggcccccac
caggaaatgcaagagctgcccactgatctactccaagaagtggaggagccatccagtggc
ccccaccaggaaatgcaagagctacccactgatctactccgggaagtggaggagccatcc
agtggcccctaccaggaaatgcaagagctacccactgatctactccgggaagtggaggag
ccatccagtggcccctaccaggaaatgcaagagctacccactgatctactccgggaagtg
gaggagccatccagtggcccctaccaggaaatgcaagagctacccactgatctactccgg
gaagtggaggagccatccagtggcccctaccaggaaatgcaagagctacccactgatcta
ctccgggaagtggaggagccatccagcgacccctgtgaggcatcatctaacgatctaccc
caagacatggaggaatcaagtgatgatggttcgaaccaggagtcgagtgatggttcaaac
cacgaattaagtaatggttcaaaccatgagtcgagctttggttcaaacccagagtcgagc
gatgtttccaacctggagtcaagcggtggttcaaaccaggagtccagcgatggttcacaa
aaggagtcaagctatgattcaaacccggagttaagtgataattcaaaccaggagttaagc
gataattcgaaccaggagtcaagcgacagttcaaaccagtcaagtgatatttcaaaccag
gaagggtcggaaccactcagtgaggcatccgattatagcatggatgaaacaatcaactca
tccgagacccagtcagaccaagatgatactgacctgggagatgacgaggaagaggaggaa
gaggaaggtggtgaagaggaaggtcagcccaagaactctccagaagaagtcgtggccacc
atggggaacgtcatctcgctgttcctccggatgcaagacctaaaagaacaacagagagtg
gcagaaaggctcatgatgcaggctatcaacgaaggtcgcctgccctccctcaggcccttc
tctggagatcgcagagactaccatgagtttgtcgtgctctgccagatgacaatgcagaac
tacccaagtatgctatacaatgatgagctgcgggtgaaattcgtcatccgccacctgact
gacctagccttggaatgggccaacgacctcgtagagcagaacagcccagtgataaacaac
ttctcagccttcctggaggccatgtcagaaaagtttgagtatcggcagaccctgcgtgtg
gcggaagacgccatgttcaacatcaggcaggggaaccgctgtgcggccgattacatcaat
gagttccggggtctgatacccaccttaggctggccagatgaagtcctgcaggcccacctg
tgccaggggctcaacgaagagatcaggcactatctgttccggatccctcagccgaattcc
ctagacaacctgattgtacttgtcctgcaacttgaagaaaagctggcagagagaagagca
ttactcaggctgccacctgagtcgcgcccaagaagcgtagcctggatggatgctcccgcc
ccagagaagtggagggtaagcagctggctgcccaatgagttccacccagacattgatcgc
gatcacctcttcttactgctcttggtgagagtggacccctaccacagtgtcgcagtgcgg
gccctggtggactcaggagcagaagggaactacatggatgagaggtttgcccaggaacac
tatgtggaactctatgagaagccttatccacagataatccaaggtgtggatggcatccca
attggcaatgaacccgtctggctgtgcaccgagcccctggtatgtgtccaccagaagcat
tatgagtacatcgaatttgacatcttaccttcgcccaacttctccatcgtcttaggcatg
aagtggctccgaacccatgcccctgaagtcgactggatgagaggccggtgtaccttccac
tctccctactgtctgcggaattgcttcaccccacctccaccatgcatcgcactagagaca
tacagcataagcctactgcccggattgccacacacatactcagacctggccgacgtgttt
aacccgagggaggcagatgatgagacttccgaccagccaagctcagacggatccgatgat
ctttctgaatcagagccctctgagcttcagcaggctggagacagtgatcaaagcggcgtc
ttttacgagtctggggcccgagagactttggaacctgtgagcgccaggatgcaagagaaa
gccaggcagcaagagaaagccagggagcaagaggaatactggatactgtatgacatgctg
actgacagacaagactacacgcagatggtaccagagctattcgaccagctacatggagcg
gcatggttcacaaaactggagctgcttgggattaaggaaagtgagatgaggcacacggtc
acacacacggaagacacttggagagcatcgttcggtttcggccttcaccagatgagatgc
taccggcccttcacaatgaactcatactctgacgaagggaacaacattgttcacttcatc
ctaaaagacatcctagggttgtttgtgatttgccatggcagagaggtcctggtctactca
atgagccaggaggaacactcccagcatgtccgccaagtcctggtccgctttcggtatcac
aacatctactgttcactggacaaaactcagttccatcgccagaccgctgaaatcttgggc
ttcaacatatcccccaaaggggtgaaactgaacaagaaccttatgaacctcatcgtgggg
tgccctgtccctggcagcaggaggtgtcttcaaagtgtgattgaccttgtctatccctat
cgccacttcgtggagaacttcgctgtcatcgcagcacccctagtgagacaactgctgagt
tcagagccctactactggggagaagaggagcaggaggccttggaatccctgaagagggct
ttccgcaagtcgcccgttctctatcaccctaagcctcagaacccattctacttggaaaca
gacatcactgggtcattcctgtctgcctccctggtccaaaccgacgacgaaactggcaag
aaatctacctgtgctttctattcaagacccctctctacaatggaggtggagtaccctcga
gtggagatgaggatccttccaatccgggctgccttcatggtgtggtgccgctacctggag
aacaccgaggagcccatcatgatccttctcaacacagaggatctagcctctctgaataat
gacaggctcaccgtacttctccccgggcattgggtcttcttcttctcacacttcaatttt
ggtgttatggagatgccagctgaaggtgacacacaagcactcttccgcagatgttggaac
cagagaggcttcagagcaaggtttctgcgcccactgctgcttatgtccattagggcaaat
ctaaggtactttgacagatcctctgagactgaggataaagaggatgatgaagaagaggag
gaggaagatggtgaagaagaagaaggggaggaggaggaagatggtgaagaagaagaaggg
gaggaggaggaagatggtgaagaagaagaggaggaggaggaagatgatgaagaagaagaa
ggggaggaggaggaagatggtgaagaagaagaaggggaggaggaggaagatggtgaagaa
gaagaaggggaggaggaggaagatggtgaagaagaagaaggggaggaggagggagaggag
gaggaagaaggagaggaggaagaggaggaagaagaggatgaggaggaagaggaggaggaa
gaggaagaggaggaagaagaggaggaagaagaggaggaggaggaagaggaggaagaagag
gaggaggaagatgaggaagaagaggatgaggaggaagaagatgaggaggtgcccagcatg
gtgcgggagctactggctgccatcccgatggaccatatcctcaatggcttactggctcac
ttcagtgtggcccagatccgggccgttgtcctaaacttcttccgtggcctgctctactgg
aagagtctcctgggtgtggcagctgtcctggtgatgttgagagcaaggcagcccctctcc
ccagtgcctgcccctaatttggaagtggccaggcctcagcaccggcacacactccgactc
atcctggactcgaccctcattgcgagtagtggcatggccacagccatcgctcagttgctc
agccagatgccccctctagtgggtgccaacaccctcccagctcgagagctggctgagctt
ttcctgggcccaaggtgctggcatcggaatgctctgcattcccagcctccacgggggatg
cgcttcacccctgggttctggttgaccctgtgtgagttctttggggtcagagtcaaccct
gaggatgacgtctttcctgacccttaccagcaccggtacttggaactgcacgtcgttggg
gatgaagatgtcgtcttgcgagaagccctgcaagacgacctgcaacgttaccgtcagtgt
ggcctgcatgacggcctgcaagacacctcgcaggacgcgcaggacaacgacgtgcaagag
gacctgtttggcgaccaggaagcggtcaccttcagaccacgaaatcttttggacccagag
gtcctagatttcctcaacaaccggctactctacaccctgggcaccgatggccgccttact
ctgcttagcagagatcaggtggcccaggccctcacacgattcctggccatggcctccaga
atggcgctgccttccccagccagggaacaggcaaggctagaagagctatcagactcagat
gatgaacttgactga
DBGET
integrated database retrieval system
