Mus musculus (house mouse): 373864 Help Entry 373864            CDS       T01002                                  Symbol Col27a1, 5730512J02Rik Name (RefSeq) collagen, type XXVII, alpha 1   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism mmu  Mus musculus (house mouse) Pathway mmu04820   Cytoskeleton in muscle cells mmu04974   Protein digestion and absorption Brite KEGG Orthology (KO) [BR:mmu00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     373864 (Col27a1)  09150 Organismal Systems   09154 Digestive system    04974 Protein digestion and absorption     373864 (Col27a1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:mmu00536]     373864 (Col27a1) Glycosaminoglycan binding proteins [BR:mmu00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    373864 (Col27a1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Motif Other DBs NCBI-GeneID:  373864 NCBI-ProteinID:  NP_079961 MGI:  2672118 Ensembl:  ENSMUSG00000045672 UniProt:  Q5QNQ9 LinkDB All DBs Position 4:63132246..63253228 Genome browser AA seq 1845 aa AA seqDB search MGTGFARGARGTAASGPGGGFLFAWILVSFTCHLASTQGAPEDVDVLQRLGLSWTKAGGG RSPTPPGVIPFPSGFIFTQRAKLQAPTANVLPTTLGRELALVLSLCSHRVNHAFLFAIRS RKHKLQLGLQFLPGRTIIHLGPRQSVAFDLDVHDGRWHHLALELRGRTVTMVTACGQHRV PVPLPSRRDSMLDPQGSFLLGKVNPRAVQFEGALCQFSIHPVAQVAHNYCAHLRERCRQV DTYSPQVGTLFPWDSGPAFALHPEPALLGLGNLTRTPATLGARPVSRALAVTLAPAMPTK PLRTVHPDVSEHSSSQTPLSPAKQSARKTPSPSSSASLANSTRVYRPAAAQPRQITTTSP TKRSPTKPSVSPLSVTPMKSPHATQKTGVPSFTKPVPPTQKPAPFTSYLAPSKASSPTVR PVQKTFMTPRPPVPSPQPLRPTTGLSKKFTNPTVAKSKSKTTSWASKPVLARSSVPKTLQ QTVLSQSPVSYLGSQTLAPALPPLGVGNPRTMPPTRDSALTPAGSKKFTGRETSKKTRQK SSPRKPEPLSPGKSARDASPRDLTTKPSRPSTPALVLAPAYLLSSSPQPTSSSFPFFHLL GPTPFPMLMGPPGSKGDCGLPGPPGLPGLPGSPGARGPRGPPGPYGNPGPPGPPGAKGQK GDPGLSPGQAHDGAKGNMGLPGLSGNPGPLGRKGHKGHPGAAGHPGEQGQPGPEGSPGAK GYPGRQGFPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGEMGRPGFPGDF GERGPPGLDGNPGEIGLPGPPGVLGLIGDTGALGPVGYPGPKGMKGLMGGVGEPGLKGDK GEQGVPGVSGDPGFQGDKGSHGLPGLPGGRGKPGPLGKAGDKGSLGFPGPPGPEGFPGDI GPPGDNGPEGMKGKPGARGLPGPPGQLGPEGDEGPMGPPGVPGLEGQPGRKGFPGRPGLD GSKGEPGDPGRPGPVGEQGLMGFIGLVGEPGIVGEKGDRGVMGPPGAPGPKGSMGHPGTP GGIGNPGEPGPWGPPGSRGLPGMRGAKGHRGPRGPDGPAGEQGSKGLKGRVGPRGRPGQP GQQGAAGERGHSGAKGFLGIPGPSGPPGAKGLPGEPGSQGPQGPVGPPGEMGPKGPPGAV GEPGLPGDSGMKGDLGPLGPPGEQGLIGQRGEPGLEGDHGPVGPDGLKGDRGDPGPDGEH GEKGQEGLKGEDGSPGPPGITGVPGREGKPGKQGEKGQRGAKGAKGHQGYLGEMGIPGEP GPPGTPGPKGSRGTLGPTGAPGRMGAQGEPGLAGYNGHKGITGPLGPPGPKGEKGDQGED GKTEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGEPGQQGQPGHPGPRGRPGP KGSKGEEGPKGKPGKAGPSGRRGTQGLQGLPGPRGVVGRQGPEGTAGSDGIPGRDGRPGY QGDQGNDGDPGPVGPAGRRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGGTGL PGNQGEPGSKGQPGDSGEMGFPGVAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIIGP PGMLGPSGLPGPKGDRGSRGDLGLQGPRGPPGPRGRPGPPGPPWHPIQFQQDDLGAAFQT WMDAQGAVRSEGYSYPDQLALDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMD CEQRMADGTYWVDPNLGCSSDTIEVSCNFTQGGQTCLKPITASKAEFAVSRVQMNFLHLL SSEGTQHITIHCLNMTVWQEGPGRSSARQAVRFRAWNGQVFEAGGQFRPEVSMDGCKVHD GRWHQTLFTFRTQDPQQLPIVSVDNLPPVSSGKQYRLEVGPACFL NT seq 5538 nt NT seq  +upstreamnt  +downstreamnt atgggcacgggattcgcgcggggggcccgaggcacagcggcgtcaggacccggggggggg tttctcttcgcctggatcttggtctcatttacctgtcacctggcctccacccaaggagct cctgaagatgtggatgtcctccagcggctgggcctcagctggacgaaggccgggggtggc cggagtcctacaccccctggtgtcattcctttcccatctggcttcatcttcacacagcgg gccaagctgcaggcccccacagccaatgttcttcccaccaccctggggcgggagctggca ttggtgttgagcctctgttcacatcgtgtgaaccatgccttcctctttgccatccgcagc aggaaacacaagctgcaactgggtctgcagttcctccccggcaggacgatcatccacctg gggcctcggcaatcagtggccttcgacttggatgtgcatgatgggcgctggcaccacctg gccctagagttgcgtggccgcacagtcacaatggtgacagcctgtgggcagcacagggta cctgtcccactgccttcccgtagggactccatgcttgacccccagggctcctttctcttg gggaaggtgaacccccgtgctgtccagtttgaaggtgcactctgtcagttcagcatccac cctgtggcgcaggtcgctcacaattactgtgcccacctgagagagcggtgccgacaggtg gacacatatagtccccaggtgggaaccctctttccttgggactctggcccagcctttgct ttgcatcctgaaccagccttgcttggcttggggaatctgaccagaactccagcaaccctg ggggccaggcctgtaagcagggcacttgcagtgactctggctcctgccatgcccaccaag cccctgaggactgtccacccagatgtctctgaacacagctcttcccagaccccactgtca cctgccaaacagtcggccaggaaaacaccttccccctcctcgtcagcttccctggctaat tccaccagggtttatcgtccagctgctgcccagccaagacagatcacaactactagcccc accaaacgttcccccaccaagccttctgtttctcccctttcagttacccccatgaaaagt ccccatgcaacccagaaaacaggtgtcccttcattcacaaagcctgttccacccactcag aagccagcgcccttcacctcctacctagcaccttccaaagcctctagtcccactgtgagg cctgttcagaagactttcatgacaccccgacctccagtccccagcccccagcccctgcgc cctactactggcttatctaagaagttcactaaccccactgttgcaaaatctaagtccaag acgaccagttgggccagcaagccggtcttggcccgctccagtgtccctaaaacgcttcag caaactgttttgtcccagtctcctgtttcctatctgggctctcagacactggctccagcc ctccctcctttgggtgttggaaatcctagaacgatgcctcccacacgtgactctgcttta actcctgctggaagcaagaaattcacaggacgggaaacctccaagaaaaccagacagaag agcagcccccggaagcccgaacctctcagccctgggaagtcagccagggatgcctcacca agagacctgacaaccaagcctagccggccgtccaccccagccctggtccttgccccagct tacctcctgtcctccagcccccagcccaccagcagcagcttccctttcttccacctgctg ggccctacacctttcccgatgctgatggggcctccaggctccaagggagactgtggcttg ccgggtccccctgggcttccaggattacctggatctccgggcgcacgaggtcctcggggt cctcctgggccgtacgggaacccaggcccacctggccctccaggagccaaaggacagaaa ggggacccaggactctcaccaggacaggctcacgatggagcaaagggcaacatgggcttg cctgggctctccggaaatccaggacccttgggaaggaagggacacaagggccatcctgga gcagcagggcaccctggagaacaggggcagccaggacctgagggcagtccaggggccaaa ggttaccctggcaggcaggggttccctggacctgtaggagaccctggccccaaaggcagc aggggttacattggtcttccggggctctttggcctgccagggtcggatggagagcggggt ctccctggcgttcctggcaagaggggcgagatgggtaggccgggcttccctggagacttt ggggaaagaggcccccctggacttgatggcaaccctggagaaattggcctgccggggcca ccaggagtgctcgggctcattggtgacacaggagcactgggcccagttggctacccagga ccgaaaggcatgaagggactgatgggcggcgtgggggagcccggactgaaaggtgataag ggtgaacaaggggtgccaggtgtgtcgggagatcctggcttccaaggagacaaggggagt catggcttgccagggctcccgggtggccgggggaagccagggcctctgggaaaagctgga gacaaaggatcacttgggtttcctggacctcctggacctgagggtttcccaggagacatt ggccctccaggggacaatggccctgaaggcatgaagggtaagcctggagcccgaggcctg cctggacctcctgggcagctggggcctgagggagatgaaggacccatggggccaccagga gtcccaggcttggagggtcagcctggaaggaaagggtttcctgggaggcctggcctggat ggctcgaagggggaaccaggggatcctggacggccaggacctgtgggtgaacaggggctt atgggattcattggtcttgtcggagagcctggaattgttggggagaagggagaccgtggg gtgatgggacccccaggtgcacctggacccaaggggtcgatgggccatcctggaacaccc ggtggtattgggaaccctggagagcctggaccctggggccctccaggatctcgaggcctg ccaggcatgaggggagccaaggggcaccggggccctcgaggacctgatggaccagctggg gagcagggatccaagggcctgaagggtcgtgtaggacctcggggcagacctggccagcca ggacagcagggtgcagctggtgagcgaggccactcaggtgcaaaaggcttccttggcatc cctggtccctcaggccctccaggtgccaagggcctcccaggagaaccgggctctcaggga cctcaggggccagttggtcctccaggagaaatggggcccaagggaccgccgggtgcagtg ggagagcctggccttcctggggactccggaatgaagggtgacctcggacctctgggcccc cctggggagcaaggtcttattgggcagcggggagagccaggccttgagggagaccatggc cctgtggggccagatgggctgaagggcgacaggggcgacccagggcccgatggcgagcat ggtgaaaagggccaggaagggctgaaaggagaggatgggtcccctgggcccccgggcatc actggcgtcccgggtcgtgaggggaagccgggcaagcagggtgagaaaggccagagggga gctaagggtgccaagggccaccaaggatatctgggagagatgggcatccccggagaacct gggccccctgggaccccaggtcctaaagggtcccggggcaccctaggaccaacgggtgct ccaggacggatgggagcccaaggagaaccaggattggccggttataatggacacaaaggc atcacaggacccctcgggcctcccgggcccaaaggcgagaagggggaccagggcgaggat ggcaagaccgaggggccccctgggccaccaggagatcggggtcctgtgggtgatcgagga gaccgtggggagccaggcgaccctggataccctggtcaagagggagttcaaggcctccgt ggagaaccgggccagcagggacagcctgggcatccaggaccccgggggcgcccaggaccc aaaggatcaaaaggcgaagagggcccaaagggaaagccaggcaaggctgggccatcaggc cggagggggacccagggccttcaaggactgccaggcccccgaggcgtggtggggagacag ggccctgagggcactgctggatctgatgggattcctggcagagatggtcggccaggatat cagggagaccagggaaatgatggggaccctggccctgtgggccctgctgggagaagagga aatccaggtgtggctggcttgcctggagcacaggggcctccgggattcaagggtgaaagt gggttacctgggcaactgggtccccctggaaaacgagggacagaaggtggaacagggctt cctgggaaccagggggagccaggatccaaaggccagccgggtgactctggcgagatgggc ttcccaggagtggctggcctctttggacccaagggcccccctggagacattggcttcaaa ggcatccaaggtcctcgggggcctcctggcttgatgggaaaggaaggtatcattggcccc cccggaatgctgggaccttctggactcccgggtcccaaaggtgacagaggcagccgagga gacttgggactgcaaggcccaaggggtcctcctggtccaaggggccggccaggtcccccg ggccctccttggcatcccatccagtttcagcaagatgaccttggagcagctttccagaca tggatggatgctcaaggagccgtcagatcggaggggtacagctatccggaccagctggcg ctagaccagggaggggagatcttcaaaaccttacactacctcagcaacctcatccagagc attaagacacccttgggcaccaaggagaacccagcccgggtctgccgggacctcatggac tgtgagcagaggatggcggatggtacctactgggtggaccccaacctcggctgctcctct gacaccattgaagtctcctgcaactttacacagggtgggcagacgtgcctgaagcccatc acggcctccaaggccgagtttgctgtgagtcgggtccagatgaatttcttgcacctgctg agctctgaggggacacagcatatcacaatccactgtctgaacatgacggtgtggcaggag ggaccgggacgctcctctgccagacaggctgtgcgcttccgtgcctggaacggacaggtc ttcgaagctgggggtcagttcaggccagaggtgtctatggatggctgcaaggtccatgat ggccgctggcatcagacactgttcaccttccggacccaggacccccagcagctgcccatc gtcagtgtggacaatctcccgcctgtctcatcagggaagcagtaccgcctggaagttgga cctgcgtgcttcctctga

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