KEGG   Mus musculus (house mouse): 385454
Entry
385454            CDS       T01002                                 
Symbol
Gm5396, EG385454
Name
(RefSeq) predicted pseudogene 5396
  KO
K10802  high mobility group protein B1
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03410  Base excision repair
mmu04140  Autophagy - animal
mmu04217  Necroptosis
mmu04613  Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    385454 (Gm5396)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    385454 (Gm5396)
  09143 Cell growth and death
   04217 Necroptosis
    385454 (Gm5396)
 09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    385454 (Gm5396)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mmu03036]
    385454 (Gm5396)
   03400 DNA repair and recombination proteins [BR:mmu03400]
    385454 (Gm5396)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mmu04147]
    385454 (Gm5396)
Chromosome and associated proteins [BR:mmu03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    385454 (Gm5396)
DNA repair and recombination proteins [BR:mmu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     385454 (Gm5396)
   MMR (mismatch excision repair)
    Other MMR factors
     385454 (Gm5396)
Exosome [BR:mmu04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   385454 (Gm5396)
SSDB
Motif
Pfam: HMG_box HMG_box_2 HMG_WDHD1 RNA_pol_3_Rpc31 Nop14 HMG_box_5 NOA36
Other DBs
NCBI-GeneID: 385454
NCBI-ProteinID: XP_036018032
MGI: 3646589
Ensembl: ENSMUSG00000084275
LinkDB
Position
X:complement(151895892..151896458)
AA seq 188 aa
MSKGEEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGNFEDMAKADKARYEREMKTYIP
HKGETKKKFKDPNAPKRPPLAFLFCSEYCPKITGKHPGLSIGDLAKKLGKMWHNTAADDK
QPYEKKAAKLKEKYEKGIAAHGAKGEPDAAKKGVVKAEKSKKKKEEEDGEEDEEDEEEEE
EDIGDDDG
NT seq 567 nt   +upstreamnt  +downstreamnt
atgagcaaaggagaggagcacaagaagaagcacccggatgcttctgtcaacttctcagag
ttctccaaaaagtgctcagagaggtggaagaccatgtctgctaaagaaaaggggaatttt
gaagatatggcaaaggctgacaaggctcgttatgaaagagaaatgaaaacctacatccct
cacaaaggggagaccaaaaagaagttcaaggaccctaatgcacccaagaggcctcctttg
gccttcttgttctgttctgagtactgccccaaaatcacaggcaagcatcctggcttatcc
attggtgatcttgcaaagaaactaggaaagatgtggcacaacactgcagcggatgacaag
cagccctatgagaagaaggctgctaagctgaaggagaagtacgagaagggtattgctgcc
cacggagctaaaggagaacctgatgcagcgaaaaagggggtggtcaaggctgaaaagagc
aagaaaaagaaggaagaggaagatggtgaggaggatgaagaggatgaggaagaggaggaa
gaagatataggtgatgatgatggataa

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