Mus musculus (house mouse): 53817
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Entry
53817 CDS
T01002
Symbol
Ddx39b, 0610030D10Rik, Bat-1, Bat1, Bat1a, D17H6S81E, D17H6S81E-1, D6S81Eh
Name
(RefSeq) DEAD box helicase 39b
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu03013
Nucleocytoplasmic transport
mmu03015
mRNA surveillance pathway
mmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
53817 (Ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
53817 (Ddx39b)
03015 mRNA surveillance pathway
53817 (Ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmu03019
]
53817 (Ddx39b)
03041 Spliceosome [BR:
mmu03041
]
53817 (Ddx39b)
Enzymes [BR:
mmu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
53817 (Ddx39b)
Messenger RNA biogenesis [BR:
mmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
53817 (Ddx39b)
Spliceosome [BR:
mmu03041
]
Complex C
Other components
EJC/TREX
53817 (Ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
53817 (Ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
53817
NCBI-ProteinID:
NP_001239386
MGI:
99240
Ensembl:
ENSMUSG00000019432
UniProt:
Q9Z1N5
LinkDB
All DBs
Position
17:35460722..35472683
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVETAAGADGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaacgatgtggacaatgagctcttggactacgaagacgacgaggtggagaca
gccgctggggcagatgggaccgaggctcccgccaagaaagacgtcaagggctcctacgtc
tccatccacagctccggcttccgagattttctactcaagccagagctgctccgggccatc
gttgactgtggctttgagcatccatcagaggtccagcatgagtgcatcccgcaggccatt
ctggggatggatgtcctgtgccaggccaagtcaggcatgggaaaaacagcagtgtttgtc
ctggccacactgcagcagctggagcccgttactgggcaggtgtctgtgctggtgatgtgt
cacactagggagctggcttttcagatcagcaaggaatatgagcgcttctctaagtacatg
ccgaatgtcaaggtggcagtgttttttggcggtctgtctatcaagaaggacgaagaggtg
ctgaagaagaactgcccacacatcgtcgtggggactcctggccgaattctagccctggct
cgaaataagagcctgaacctcaaacacattaaacactttattttggacgagtgtgacaag
atgcttgaacagctcgacatgcgtcgggatgtccaggaaatttttcgcatgaccccccat
gagaagcaggtcatgatgttcagtgctaccttgagcaaagagatccgcccagtctgccgc
aagttcatgcaagatcctatggagatcttcgtggatgacgagaccaagttgacgctgcac
gggttgcagcagtactacgtgaaactgaaggacaacgagaagaaccggaagctctttgat
cttctcgatgtcctcgagttcaaccaggtggtgatctttgtgaagtccgtgcagcgctgc
atcgccctggcccagcttctagtggaacagaacttcccagccattgctatccatcgtgga
atgccccaggaggagaggctctctcggtatcagcagttcaaggattttcagcggaggatt
cttgtggctaccaacctgtttggccgaggcatggatattgagcgtgtgaacattgctttc
aactatgacatgccagaggactcggacacctacctgcacagggtggccagagcgggccgg
tttggcaccaagggcttggccatcacatttgtgtcagatgagaatgatgccaagatcctg
aatgacgttcaggaccgtttcgaggtcaacatcagcgagctgcccgatgagattgacatt
tcctcctacattgagcagacacggtag
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integrated database retrieval system