Mus musculus (house mouse): 56194
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Entry
56194 CDS
T01002
Symbol
Prpf40a, 2810012K09Rik, FBP-11, FBP11, Fnbp11, Fnbp3
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform 2
KO
K12821
pre-mRNA-processing factor 40
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
56194 (Prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmu03041
]
56194 (Prpf40a)
Spliceosome [BR:
mmu03041
]
Complex A
U1 snRNP components
U1 related factors
56194 (Prpf40a)
Complex B
56194 (Prpf40a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
FF_PRPF40A
WW
WW_TCERG1
FF_RHG35_4th
CEP164_N
WW_2
Motif
Other DBs
NCBI-GeneID:
56194
NCBI-ProteinID:
NP_061255
MGI:
1860512
Ensembl:
ENSMUSG00000061136
UniProt:
Q9R1C7
LinkDB
All DBs
Position
2:complement(53024714..53081450)
Genome browser
AA seq
968 aa
AA seq
DB search
MCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMESQPPSRGPGDGERRLSGSNLCSSSWVS
ADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMS
SVMSGMMMSHMSQASMQPALPPGVNSMDVAAGAASGAKSMWTEHKSPDGRTYYYNTETKQ
STWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTI
VAGGLITKSNLHAMIKAEESSKQEECTTASTAPVPTTEIPTTMSTMAAAEAAAAVVAAAA
AAAAAANANTSTTPTNTVGSVPVAPEPEVTSIVATAVDNENTVTVSTEEQAQLANTTAIQ
DLSGDISSNTGEEPAKQETVSDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRV
PSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQR
FLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKR
NWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALE
KEEEEEKQKTLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNM
LGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRS
TTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWED
IRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSR
SGSESDDDDSHSKKKRQRSESHSASERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESD
TEREKDKKEKDRDSEKDRSRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRRRTL
LEQLDDDQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgtgcagcggcagtggccgccgacggagcagtctgagcccgacgatgaggccggggact
ggagccgagcgtggaggcctcatggtgagtgaaatggagagccaacctccctcgcggggt
cccggggacggggagcggagattgtccggctcaaacctgtgctccagttcttgggtctct
gctgacggcttcctgaggagacggccctcgatggggcatcctggcatgcattatgcacca
atgggcatgcaccctatgggtcagagagcaaacatgcctcctgtacctcatggaatgatg
ccacagatgatgccccctatgggagggcctccaatgggacaaatgcctggaatgatgtct
tcagtaatgtcaggaatgatgatgtctcatatgtctcaggcttccatgcaacctgcctta
ccgcctggagtaaatagtatggatgtagcagcaggtgcagcatctggtgcaaaatcaatg
tggacagaacataaatcacctgatggaaggacttattattacaatactgaaacaaaacag
tctacctgggaaaagccagatgatcttaaaacacctgctgagcaactattgtctaaatgc
ccatggaaagagtacaaatctgattccgggaagccttattactataattctcaaacaaag
gagtcccgctgggccaaacctaaggaacttgaagatcttgaaggataccagaataccatt
gttgctggaggtcttattacaaaatcaaacctgcatgccatgatcaaagctgaagaaagc
agcaagcaagaagaatgtactacagcatcaacagccccagttcctacaacagaaattcct
accactatgagcaccatggctgctgcagaagcagcggctgctgttgttgcagctgctgca
gctgctgcagcagcagctaatgccaatacttccaccacacctactaatactgtgggaagt
gttccagttgctcctgaacctgaggttacttccattgttgctactgctgtagataatgaa
aatacagtaactgtatcaactgaagagcaagcacagcttgctaataccacagctattcaa
gatctcagtggtgatatatccagtaacactggagaggaaccagctaaacaagaaactgtc
tccgattttactcctaaaaaagaagaggaagagagccaaccagcaaaaaaaacatatact
tggaatacaaaggaggaggcaaagcaagcatttaaagaattattgaaagaaaagcgggtg
ccctccaatgcttcatgggagcaggctatgaaaatgatcataaatgatcctcggtacagt
gctttagcaaagctgagtgagaaaaagcaggcctttaatgcctataaagtccagacggag
aaagaggaaaaagaagaagcaagatcaaaatacaaagaagctaaggaatcttttcagcgt
tttcttgaaaatcatgagaaaatgacttccacaaccagatacaaaaaagctgagcaaatg
tttggggagatggaagtttggaatgcaatttcagagcgtgatcgtctagaaatctatgaa
gatgttttgttcttcctttcaaagaaagaaaaggaacaagcaaagcagctacgaaagaga
aattgggaagccttaaaaaacatacttgacaatatggctaacgttacatactctaccact
tggtctgaagcccagcagtatctgatggataatccaacgttcgcagaggatgaagagtta
cagaacatggataaagaagatgcattaatatgctttgaggaacacatccgggctttagaa
aaggaagaagaagaagaaaaacagaagactttgttgagagaaaggaggaggcagcgtaaa
aatagggaatcttttcagatctttctggacgagttgcacgagcatgggcagctgcactct
atgtcctcttggatggagctgtatcccaccatcagctctgacattcgcttcactaacatg
ctgggtcagccgggatcaactgcacttgatcttttcaagttttatgttgaagatcttaaa
gcacgatatcatgatgaaaagaagataataaaagacattctgaaggataaaggatttgta
gttgaagtaaacactacttttgaagattttgtggcaataatcagttcaaccaaaagatca
actactttggatgctggaaatatcaagttggctttcaatagtttactagaaaaggcagaa
gcccgtgaacgtgagagagaaaaagaagaggctcggaaaatgaaacggaaagagtctgcc
tttaagagtatgttgaaacaggctacccctccaatagaactggatgctgtctgggaagat
atccgggaaagatttgtaaaggaaccagcgtttgaggatataactctagaatctgaaaga
aaaagaatatttaaagatttcatgcatgtgcttgagcatgaatgtcagcatcatcattca
aagaacaagaaacattctaagaaatctaaaaagcaccataggaaacgctcccgctctcga
tcgggatcagagtcagatgatgacgacagccattcaaagaaaaaaaggcagcgatcagag
tctcattctgcttcagagcgttcgtccagtgctgagtctgagagaagttacaagaagtca
aaaaagcataagaagaaaagcaaaaagaggaggcataaatctgactctccagaatcagat
actgaacgagaaaaggataaaaaagaaaaagatcgggacagtgaaaaagacagaagtaga
cagagatcagaatcaaaacacaaatcacctaagaaaaagactggaaaggattctggtaac
tgggatacttctggcagtgaactgagtgaaggggaattggaaaagcgcagaagaaccctt
ttggagcaactggatgatgatcaataa
DBGET
integrated database retrieval system
