KEGG   Mus musculus (house mouse): 67031
Entry
67031             CDS       T01002                                 
Symbol
Upf3a, 2600001C03Rik, 4930546M19Rik, RENT3A, UPF3
Name
(RefSeq) UPF3 regulator of nonsense transcripts homolog A (yeast)
  KO
K14328  regulator of nonsense transcripts 3
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03013  Nucleocytoplasmic transport
mmu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    67031 (Upf3a)
   03015 mRNA surveillance pathway
    67031 (Upf3a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    67031 (Upf3a)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     67031 (Upf3a)
   mRNA cycle factors
    P-body specific factors
     67031 (Upf3a)
SSDB
Motif
Pfam: Smg4_UPF3
Other DBs
NCBI-GeneID: 67031
NCBI-ProteinID: NP_080200
MGI: 1914281
Ensembl: ENSMUSG00000038398
UniProt: Q3ULJ3
LinkDB
Position
8:13834636..13848723
AA seq 422 aa
MRSEEGAGGLGAALAARGPSWREKLSSSETHCRRESPRKESAAPPAPTLSESGAGKPREE
KRTALSKVVLRRLPPGLTKEQLEEQLRPLPAHDYFEVVAADLSLYPHVYSRAYINFRNPD
DILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKLKKKDAKTGSIEDDPEYKQFLE
SYSLEEEKTSASPETLLGEIEAKTRELLARRTTPLLEYIKNRKLEKQRLREEKREERRRR
ELEKKRLREEEKRKRREEDRCKRKEAERHKRAEKDVRIKLLKKLETGEEVATEKPKERGE
AVGAGDEKQEDRLVASQPETAGERLQDTSDKEPRDKRSREKDPETSRCHPDTCRKHSSHS
EFARFSRRNEDEAKWGKGFAQDRGKKGQDGSVPMDVAERSGKEHKEYDSLGPRKDRLGHK
AQ
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgcgctcggaagagggggccggaggcttaggcgcagccctggctgcgcggggcccgagc
tggagggagaaactatcgagctcagagacccactgccgccgcgagtcaccgcggaaggag
tcggcggcgcctccggccccgaccctaagtgagagcggggccggcaagcctcgcgaggag
aagaggacagccctgagcaaggtggtcctccggcgtctgcccccgggcctcaccaaagag
cagctggaagagcaactgcgccccctgccggcgcacgattacttcgaggtggtggctgcg
gacctcagcctttatcctcatgtctactccagagcatacattaattttaggaaccctgat
gacatcctgctgttcagagaccgttttgacggctatatcttcattggcaataaaggcctg
gagtatcctgctgtggtggagtttgctccattccagaagattgccaaaaagaagctgaag
aaaaaagatgccaagaccggaagcattgaagatgacccagaatataaacagttcctggag
tcgtacagcctggaggaggagaagaccagcgctagtcccgagacgctgctgggagagata
gaagccaagacgagagagctcctggctagaaggaccacccctcttttggaatatattaaa
aacagaaaattagaaaagcagagactccgggaagaaaagcgcgaggagcggaggaggagg
gagctagaaaagaagcgtctgcgggaagaagagaagaggaagaggagagaggaggaccgc
tgtaagaggaaggaggcggagaggcacaagagagcggagaaggacgtgaggatcaagctt
cttaaaaaactggaaacgggagaggaagtggccacagagaaacccaaagaaagaggtgaa
gctgttggtgctggagacgagaagcaggaagaccggctggtagcgagccagccagagaca
gctggggagaggctacaggataccagtgataaagagccaagggacaagagatctcgagag
aaagaccctgaaacttctagatgtcatccggacacctgcaggaagcacagcagtcactca
gagtttgccaggttctccagaaggaatgaagacgaggcaaagtgggggaaaggcttcgcc
caggacagagggaagaagggccaggatggcagtgtccccatggacgtggcagagagaagc
ggcaaggagcacaaggagtatgacagcctggggccaagaaaggatcgcctgggacacaag
gcccagtag

KEGG   Mus musculus (house mouse): 68134
Entry
68134             CDS       T01002                                 
Symbol
Upf3b, 5730594O13Rik, RENT3B, UPF3X
Name
(RefSeq) UPF3 regulator of nonsense transcripts homolog B (yeast)
  KO
K14328  regulator of nonsense transcripts 3
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03013  Nucleocytoplasmic transport
mmu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    68134 (Upf3b)
   03015 mRNA surveillance pathway
    68134 (Upf3b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    68134 (Upf3b)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     68134 (Upf3b)
   mRNA cycle factors
    P-body specific factors
     68134 (Upf3b)
SSDB
Motif
Pfam: Smg4_UPF3 RRM_1
Other DBs
NCBI-GeneID: 68134
NCBI-ProteinID: NP_080849
MGI: 1915384
Ensembl: ENSMUSG00000036572
UniProt: Q3ULL6 Q80UI8
LinkDB
Position
X:complement(36355331..36374124)
AA seq 472 aa
MKEEKDHRPKEKRVTLFTPQGATGGCIGATAEGAKGDDRQDRNRDKKEALSKVVIRRLPP
TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDILLFRDRFDGYVFL
DNKGQEYHAIVEFAPFQKAAKKKIKKRDTKVGTIEDDPEYRKFLESYATDNEKMTSTPET
LLEEIEAKNRELIAKRTTPLLSFLKNKQRMREEKREERRRREIERKRQREEERRKWKEEE
KRKRKDIEKLKKIERIPEREKIRDEPKIKLLRKPEKGDEKELDKRDKTKRLDKENLNEER
ASGHSYTLPRRSDVELKDEKPKRLDDEGVRDYRDRDRDYERDQERMIRERERLKRQEEER
RRQQQKERYEKEKAFKRKEEEMKREKEALRDKGKKSENTESICSLEKIEKKEEVVKRDRI
RNKDRPAMQLYQPGARSRSRLCPADDSIKPGDSPVDKKQESGISHRKEGGEE
NT seq 1419 nt   +upstreamnt  +downstreamnt
atgaaggaagaaaaagatcataggcctaaggagaaacgagtgaccctgtttacgccgcag
ggcgccacaggcggctgtattggcgctactgccgaaggcgccaaaggggacgataggcag
gatcgcaacagggacaagaaagaagctttgagcaaggtggtaattcgaagattacctccc
actttgaccaaggaacagcttcaggaacatcttcaacctatgcctgagcacgattatttt
gagtttttttctaatgatactagcctttatcctcatatgtatgccagagcatatatcaac
tttaaaaaccaagaagacattcttttattcagggaccgatttgatggctatgtattcctt
gacaataagggtcaagaatatcatgctatagtagaatttgcaccatttcaaaaagctgca
aaaaagaagattaagaaaagagatacaaaagttgggactatcgaggatgatccagaatac
agaaaatttttggagagttatgccacagacaatgagaaaatgacatctactccagagaca
ttgctggaggaaattgaagccaaaaatcgagaattaatagctaaaaggacaacgcccctt
ttgagcttcctgaagaacaagcaaagaatgagagaagaaaagagagaagaaaggaggaga
cgggaaatagagaggaaaaggcaaagagaagaagagagaagaaaatggaaagaagaggag
aaacgaaaaagaaaagatatagaaaaactaaagaagatagaaagaattccagaaagggag
aaaataagggatgaaccaaagattaagttgctcaggaaaccggaaaaaggagatgaaaaa
gaacttgataaaagagacaaaaccaagagactggacaaagaaaatctgaatgaagaaaga
gccagtgggcacagttatactctgcccaggcgttctgatgtcgaactgaaggatgaaaag
ccaaagaggctcgatgacgagggtgtcagagattacagagacagggaccgggactatgag
agagatcaggagcgcatgatccgagaaagagagaggctgaagcggcaagaagaagagcgc
cggcggcagcagcagaaagaacgctatgagaaagagaaggcttttaagcgaaaggaagaa
gaaatgaagagagagaaagaggcacttcgagataaaggaaagaagagtgagaatacagaa
tcaatatgctcattagaaaaaattgaaaaaaaagaggaagtggttaagagagaccgcata
aggaacaaggatcgtccagccatgcagctttaccaaccaggagctcgaagccgaagccga
ctctgtcccgccgatgacagcatcaagcctggagattccccagtggacaaaaagcaggaa
agtggtattagccatagaaaagaaggaggagaggagtga

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