Mus musculus (house mouse): 68188
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Entry
68188 CDS
T01002
Symbol
Sympk, 1500016F02Rik, 4632415H16Rik, SPK, SYM
Name
(RefSeq) symplekin isoform 1
KO
K06100
symplekin
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu03015
mRNA surveillance pathway
mmu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
68188 (Sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
68188 (Sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmu03021
]
68188 (Sympk)
03019 Messenger RNA biogenesis [BR:
mmu03019
]
68188 (Sympk)
Transcription machinery [BR:
mmu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
68188 (Sympk)
Messenger RNA biogenesis [BR:
mmu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
68188 (Sympk)
U7-dependent histone pre-mRNA processing factors
68188 (Sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
INTS7_N
Motif
Other DBs
NCBI-GeneID:
68188
NCBI-ProteinID:
NP_080881
MGI:
1915438
Ensembl:
ENSMUSG00000023118
UniProt:
Q80X82
LinkDB
All DBs
Position
7:18758321..18788542
Genome browser
AA seq
1288 aa
AA seq
DB search
MASSSGDSVTRRSVASQFFTQEEGPSIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALQWMVKSRVISDLQEACWDMVSSMAGEIILLLDSDNDGIR
THAIKFVEGLIVTLSPRMADSEVPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAAVEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSSKDSRKRPRDDTDSTLKKM
KLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPETMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VVKPESVLIKRRLSVQGQAISVVGSQSTMSPLEEEVPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSGF
KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGTSGTLDKYEDCLICLLSGLQEKPDQK
DGIFTKVVLEAPLITESALEVIRKYCEDESRAYLGMSTLGDLIFKRPSRQFQYLHVLLDL
SSHEKDRVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
ARLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMTILEATGKQEPEVKEAPSGPLEEDDLEPLALALAPAPAPAPAPAP
APAPAPRPPQDLIGLRLAQEKALKRQLEEEQKQKPTGIGAPAACVSSTPSVPAAARAGPT
PAEEVMEYREEGPECETPAIFISMDDDSGLAETTLLDSSLEGPLPKEAAAVGSSSKDERS
PQNLSHAVEEALKTSSPETREPESKGNS
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcagcagcggggacagtgtcacccgccggagtgtggcatcacagtttttcaca
caagaagaagggccaagcatcgatggcatgaccacttctgagagggtggtagatcttctg
aaccaggctgcattgatcaccaatgactccaagatcacagtgctcaaacaggtccaagag
ctgatcatcaacaaggaccccaccctgcttgacaacttcctggatgagatcatcgctttc
caagcagacaaatccattgaagtgcgcaagtttgtcattggcttcattgaggaggcatgc
aagcgggacattgagctgctgctaaaactgatcgccaacctcaacatgctattgcgggat
gaaaatgtgaacgtggttaagaaggccatcctcaccatgacccagctctacaaggtggcc
ctacagtggatggtgaagtctcgagtcatcagtgatctccaggaggcctgctgggacatg
gtgtcctctatggctggggaaatcatcctgcttttggattctgacaacgatggcatccgt
acacatgccatcaagtttgtggagggcctcattgtcaccctgtcaccccgcatggctgac
tcagaggtcccacgacgccaggagcatgacatcagtctggaccgcattcctcgagatcac
ccctacatccagtacaatgtcctatgggaagaaggcaaggcagctgtggagcagctgctg
aagttcatggtgcaccccgccatctcctccatcaacctgaccacagcgctcggctccctt
gccaacatcgcccgccagagacccatgttcatgtccgaggtgatccaggcctatgagact
ctgcatgccaacctgcccccaacgctggccaagtcccaggtgagcagtgtgcggaagaac
cttaagctgcacttgctcagtgtgctcaagcaccctgcctccttggagttccaggcccag
atcaccaccctgctggtggatctgggcacgccccaggctgagatcgcccgaaacatgcct
agcagcaaggactcccgcaagcggccccgggacgatacagattccacgctcaagaagatg
aagctggagcccaacttgggagaagacgatgaggacaaagacttggagcctggcccatca
gggacgtcaaaggcgtcagcccagatctcaggccagtcagacacggacatcactgctgag
ttcttgcagcctctgctgacacctgacaatgtggccaatctggtcctcatcagcatggtg
tacctgcctgagaccatgcctgcctccttccaagccatctacacccctgtggagtcagca
ggcactgaagcccagatcaagcacctggctcgactcatggccacacagatgacagctgca
ggactgggtcctggtgtggaacagacgaaacagtgcaaggaggagcccaaggaggagaag
gtggtaaagccggagagcgtcctgatcaagcggcgcctgtcggtgcagggccaggccatc
tctgtggtaggctctcagagcaccatgtctcccttggaggaggaggtaccccaggccaag
aggaggccagaacccatcatccctgtcacgcagccacggctggcaggcgcaggtgggcgc
aagaagatcttccgtctgagcgatgtgctgaagcccctgacagatgcccaggtggaagcc
atgaagctaggagctgtgaagcggatcctgagggctgagaaggctgtagcctgcagtggg
gcagcccaggtgcgcatcaagatcctggccagcctcgtaacacagttcgactccggattc
aaggcagaggtgctgtcctttatcctggaagatgtccgggcccgtctggacctggctttt
gcctggctctaccaggaatataatgcctacctggcagcagggacctcaggcactctggac
aaatatgaggattgcctcatctgcctgctctctggactacaagagaaaccagaccagaaa
gatgggatctttaccaaggtggttttggaggccccactgatcactgagagtgccttggag
gtgatacggaagtactgtgaggatgagagtcgtgcctacctgggcatgtcgacacttgga
gacctgatcttcaagcgcccttctcgccagttccagtatctgcacgttcttcttgacctc
agctctcacgagaaggacagggtgcgctcccaggccttgctcttcattaagcgaatgtat
gagaaggagcagcttcgagagtatgtggagaaatttgccctcaactacctgcagctcctg
gtccaccccaacccaccctcggtgctgtttggagccgacaaggacacagaggtggccgca
ccctggacagaggaaacagtgaagcagtgtttgtatctgtatctggctctcctgcctcag
aaccacaagctgatccatgagctggcagccgtgtacactgaagccatcgctgacatcaag
cggacagtgctgagggtcattgagcagccgatccgagggatgggcatgaactctccagag
ctgctgctgctggtagaaaactgtcccaagggggcagagacgctggtcacccgctgcctg
cacagcctcaccgacaaagtgccaccatccccagaactggtgaagcgggtccgagacctg
taccacaaacggctgcctgatgtgcgcttcctcatccccgtgctcaatgggttggagaag
aaagaggtgatccaggcgctgcccaagctcatcaaactcaaccccattgtggtgaaggaa
gtcttcaaccgcctgctaggcactcagcacggtgaggggaactcggccctgtcccccctg
aatccaggagagctgctgattgcattgcacaatattgactctgtgaagtgtgacatgaag
tccatcatcaaagccaccaacctgtgttttgcggagcggaatgtgtacacgtcggaagtg
ctagctgtggtgatgcagcagctgatggagcaaagccctctgcccatgctgctcatgcgg
accgtcatccagtccctcaccatgtacccccgcctggggggcttcgtcatgaacatcctg
gcccgactcatcatgaagcaggtatggaagtaccccaaggtatgggagggcttcatcaag
tgctgccagcgcaccaagccacagagtttccaggtcatcctgcagctacctccacagcag
cttggcgcagtctttgacaagtgccctgagctccgggagccactgttggcccatgtgcgc
tccttcactccccaccagcaagcacacatccccaactccatcatgaccatcctggaggcc
actggaaagcaggagcccgaagtcaaggaagcaccttcagggcccctggaagaggatgac
ctggagcccttggctctggctttggccccggctccggccccggccccggccccggccccg
gccccggcccctgccccacggccccctcaggacctcatcggcctgcgattggctcaggag
aaggccctgaagaggcagctggaggaggaacagaagcagaagcccacaggcatcggagcg
cccgctgcctgtgtgtcctcaacgccctcggtgccagcagcagcccgagctgggcccacc
ccagctgaggaggtcatggaataccgggaggagggtcccgaatgcgagaccccggccatc
ttcatcagcatggacgacgactcggggctggctgaaaccacactgctggactctagtctc
gaggggcccctgcctaaggaggcagcagcagtcgggtcgagctccaaggatgagcggagc
ccccagaacctcagccatgctgtggaagaagccttgaagacctccagcccagaaaccagg
gaacccgagagcaaggggaacagctga
DBGET
integrated database retrieval system
