Mus musculus (house mouse): 68188
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Entry
68188 CDS
T01002
Symbol
Sympk, 1500016F02Rik, 4632415H16Rik, SPK, SYM
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu03015
mRNA surveillance pathway
mmu04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
68188 (Sympk)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
68188 (Sympk)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmu03021
]
68188 (Sympk)
03019 Messenger RNA biogenesis [BR:
mmu03019
]
68188 (Sympk)
Transcription machinery [BR:
mmu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
68188 (Sympk)
Messenger RNA biogenesis [BR:
mmu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
68188 (Sympk)
U7-dependent histone pre-mRNA processing factors
68188 (Sympk)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
68188
NCBI-ProteinID:
NP_080881
MGI:
1915438
Ensembl:
ENSMUSG00000023118
UniProt:
Q80X82
LinkDB
All DBs
Position
7:18758321..18788542
Genome browser
AA seq
1288 aa
AA seq
DB search
MASSSGDSVTRRSVASQFFTQEEGPSIDGMTTSERVVDLLNQAALITNDSKITVLKQVQE
LIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD
ENVNVVKKAILTMTQLYKVALQWMVKSRVISDLQEACWDMVSSMAGEIILLLDSDNDGIR
THAIKFVEGLIVTLSPRMADSEVPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAAVEQLL
KFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKN
LKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSSKDSRKRPRDDTDSTLKKM
KLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPETMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEK
VVKPESVLIKRRLSVQGQAISVVGSQSTMSPLEEEVPQAKRRPEPIIPVTQPRLAGAGGR
KKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSGF
KAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGTSGTLDKYEDCLICLLSGLQEKPDQK
DGIFTKVVLEAPLITESALEVIRKYCEDESRAYLGMSTLGDLIFKRPSRQFQYLHVLLDL
SSHEKDRVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDTEVAA
PWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEK
KEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMK
SIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNIL
ARLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVR
SFTPHQQAHIPNSIMTILEATGKQEPEVKEAPSGPLEEDDLEPLALALAPAPAPAPAPAP
APAPAPRPPQDLIGLRLAQEKALKRQLEEEQKQKPTGIGAPAACVSSTPSVPAAARAGPT
PAEEVMEYREEGPECETPAIFISMDDDSGLAETTLLDSSLEGPLPKEAAAVGSSSKDERS
PQNLSHAVEEALKTSSPETREPESKGNS
NT seq
3867 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcagcagcggggacagtgtcacccgccggagtgtggcatcacagtttttcaca
caagaagaagggccaagcatcgatggcatgaccacttctgagagggtggtagatcttctg
aaccaggctgcattgatcaccaatgactccaagatcacagtgctcaaacaggtccaagag
ctgatcatcaacaaggaccccaccctgcttgacaacttcctggatgagatcatcgctttc
caagcagacaaatccattgaagtgcgcaagtttgtcattggcttcattgaggaggcatgc
aagcgggacattgagctgctgctaaaactgatcgccaacctcaacatgctattgcgggat
gaaaatgtgaacgtggttaagaaggccatcctcaccatgacccagctctacaaggtggcc
ctacagtggatggtgaagtctcgagtcatcagtgatctccaggaggcctgctgggacatg
gtgtcctctatggctggggaaatcatcctgcttttggattctgacaacgatggcatccgt
acacatgccatcaagtttgtggagggcctcattgtcaccctgtcaccccgcatggctgac
tcagaggtcccacgacgccaggagcatgacatcagtctggaccgcattcctcgagatcac
ccctacatccagtacaatgtcctatgggaagaaggcaaggcagctgtggagcagctgctg
aagttcatggtgcaccccgccatctcctccatcaacctgaccacagcgctcggctccctt
gccaacatcgcccgccagagacccatgttcatgtccgaggtgatccaggcctatgagact
ctgcatgccaacctgcccccaacgctggccaagtcccaggtgagcagtgtgcggaagaac
cttaagctgcacttgctcagtgtgctcaagcaccctgcctccttggagttccaggcccag
atcaccaccctgctggtggatctgggcacgccccaggctgagatcgcccgaaacatgcct
agcagcaaggactcccgcaagcggccccgggacgatacagattccacgctcaagaagatg
aagctggagcccaacttgggagaagacgatgaggacaaagacttggagcctggcccatca
gggacgtcaaaggcgtcagcccagatctcaggccagtcagacacggacatcactgctgag
ttcttgcagcctctgctgacacctgacaatgtggccaatctggtcctcatcagcatggtg
tacctgcctgagaccatgcctgcctccttccaagccatctacacccctgtggagtcagca
ggcactgaagcccagatcaagcacctggctcgactcatggccacacagatgacagctgca
ggactgggtcctggtgtggaacagacgaaacagtgcaaggaggagcccaaggaggagaag
gtggtaaagccggagagcgtcctgatcaagcggcgcctgtcggtgcagggccaggccatc
tctgtggtaggctctcagagcaccatgtctcccttggaggaggaggtaccccaggccaag
aggaggccagaacccatcatccctgtcacgcagccacggctggcaggcgcaggtgggcgc
aagaagatcttccgtctgagcgatgtgctgaagcccctgacagatgcccaggtggaagcc
atgaagctaggagctgtgaagcggatcctgagggctgagaaggctgtagcctgcagtggg
gcagcccaggtgcgcatcaagatcctggccagcctcgtaacacagttcgactccggattc
aaggcagaggtgctgtcctttatcctggaagatgtccgggcccgtctggacctggctttt
gcctggctctaccaggaatataatgcctacctggcagcagggacctcaggcactctggac
aaatatgaggattgcctcatctgcctgctctctggactacaagagaaaccagaccagaaa
gatgggatctttaccaaggtggttttggaggccccactgatcactgagagtgccttggag
gtgatacggaagtactgtgaggatgagagtcgtgcctacctgggcatgtcgacacttgga
gacctgatcttcaagcgcccttctcgccagttccagtatctgcacgttcttcttgacctc
agctctcacgagaaggacagggtgcgctcccaggccttgctcttcattaagcgaatgtat
gagaaggagcagcttcgagagtatgtggagaaatttgccctcaactacctgcagctcctg
gtccaccccaacccaccctcggtgctgtttggagccgacaaggacacagaggtggccgca
ccctggacagaggaaacagtgaagcagtgtttgtatctgtatctggctctcctgcctcag
aaccacaagctgatccatgagctggcagccgtgtacactgaagccatcgctgacatcaag
cggacagtgctgagggtcattgagcagccgatccgagggatgggcatgaactctccagag
ctgctgctgctggtagaaaactgtcccaagggggcagagacgctggtcacccgctgcctg
cacagcctcaccgacaaagtgccaccatccccagaactggtgaagcgggtccgagacctg
taccacaaacggctgcctgatgtgcgcttcctcatccccgtgctcaatgggttggagaag
aaagaggtgatccaggcgctgcccaagctcatcaaactcaaccccattgtggtgaaggaa
gtcttcaaccgcctgctaggcactcagcacggtgaggggaactcggccctgtcccccctg
aatccaggagagctgctgattgcattgcacaatattgactctgtgaagtgtgacatgaag
tccatcatcaaagccaccaacctgtgttttgcggagcggaatgtgtacacgtcggaagtg
ctagctgtggtgatgcagcagctgatggagcaaagccctctgcccatgctgctcatgcgg
accgtcatccagtccctcaccatgtacccccgcctggggggcttcgtcatgaacatcctg
gcccgactcatcatgaagcaggtatggaagtaccccaaggtatgggagggcttcatcaag
tgctgccagcgcaccaagccacagagtttccaggtcatcctgcagctacctccacagcag
cttggcgcagtctttgacaagtgccctgagctccgggagccactgttggcccatgtgcgc
tccttcactccccaccagcaagcacacatccccaactccatcatgaccatcctggaggcc
actggaaagcaggagcccgaagtcaaggaagcaccttcagggcccctggaagaggatgac
ctggagcccttggctctggctttggccccggctccggccccggccccggccccggccccg
gccccggcccctgccccacggccccctcaggacctcatcggcctgcgattggctcaggag
aaggccctgaagaggcagctggaggaggaacagaagcagaagcccacaggcatcggagcg
cccgctgcctgtgtgtcctcaacgccctcggtgccagcagcagcccgagctgggcccacc
ccagctgaggaggtcatggaataccgggaggagggtcccgaatgcgagaccccggccatc
ttcatcagcatggacgacgactcggggctggctgaaaccacactgctggactctagtctc
gaggggcccctgcctaaggaggcagcagcagtcgggtcgagctccaaggatgagcggagc
ccccagaacctcagccatgctgtggaagaagccttgaagacctccagcccagaaaccagg
gaacccgagagcaaggggaacagctga
DBGET
integrated database retrieval system
