KEGG   Mus musculus (house mouse): 72787
Entry
72787             CDS       T01002                                 
Symbol
Ndc1, 2810475A17Rik, Tmem48, sks
Name
(RefSeq) NDC1 transmembrane nucleoporin
  KO
K14315  nucleoporin NDC1
Organism
mmu  Mus musculus (house mouse)
Pathway
mmu03013  Nucleocytoplasmic transport
mmu05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:mmu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    72787 (Ndc1)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    72787 (Ndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mmu03019]
    72787 (Ndc1)
Messenger RNA biogenesis [BR:mmu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     72787 (Ndc1)
SSDB
Motif
Pfam: Ndc1_Nup ARM_At3g06530
Other DBs
NCBI-GeneID: 72787
NCBI-ProteinID: NP_082631
MGI: 1920037
Ensembl: ENSMUSG00000028614
UniProt: Q8VCB1
LinkDB
Position
4:107225244..107273543
AA seq 673 aa
MATAASGPCAGGSPRDILWRVLGWRIVTSIVWSVVLLPVCITAFIVLSSINLFHPIQWLS
DSCNDFYSSQVIFHLLLLAVVIIIISIFNVEFYTVVPSISGSRLALIARILHPQQLTHSF
IHAAMGMAVAWCAAIMTKGQYSSLVVPCTGTESLDSPAAQTCLNEYHLFFLLSGAFMGYS
YSLLYFINNMNYLPFPIIQQYKFLRFRRSLLLLVKHSCVESLFMVRNFCIVYYFFGHIPK
AWISTALDLHTDEQAHRPLDTIGGLLNVSLLYHVWLCGVFLLVTWYSSWILFKIYATEAH
VFPVQPPFAEASDECLPKVLNSNPPRIVKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHP
HNWTAISRECLNLLNDMTQKLVLYQEAAATNGRMYSSYSVEPKKLSSAEETAFQTPKPSQ
TPSVPPLVKTSLFSPKLSTPNVSSPFGTPFGSSVVNRMAGILDVNPFSGSPQSPQLIRRG
PRLWTHTSDQQVSAISNPSPCASVTAEGKTVRQPSVIYSWIQNKREQIKNFLSKRVLIMY
FFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILHTLLTLQEA
VDKYFKLPHASSKPPRASGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQASAE
HQKRLQQFLEFKE
NT seq 2022 nt   +upstreamnt  +downstreamnt
atggccacggctgcgagcgggccctgcgccggcgggtcgccgcgggacatcctttggcgc
gttttgggttggaggatagttaccagcatcgtttggtcagtagtgcttctacccgtctgc
atcacagcctttatagtcttaagcagcatcaatttattccaccctatacagtggctgtca
gattcttgcaatgacttctatagttcccaagtcatctttcacctcctgctgctggccgtg
gtcattataataataagtattttcaatgtggaattctatacagttgtgccctccatatcc
ggctccagactggccctgatagcgcggatcctgcatccccagcagctcacgcactccttc
atccacgccgcgatgggaatggctgtggcttggtgtgcggccatcatgaccaagggccag
tacagctctctcgtggttccctgcactggaactgagagcttagatagccctgctgctcag
acctgcttgaatgaatatcatctgtttttcctactgtccggagcattcatgggctatagc
tatagtcttctgtatttcattaacaacatgaattatctcccgtttcctattatacagcag
tacaaatttttgcgtttccggagatctctcctcttactagttaaacatagctgtgtggaa
tccctgttcatggtcagaaatttctgcattgtgtattatttttttggccatattcccaaa
gcatggattagcactgctctggaccttcacacagatgagcaggctcacaggcctcttgac
acgataggcggtctcctgaacgtctcattactctaccacgtctggctgtgtggcgtcttc
ctcttggtgacttggtatagctcatggatactcttcaaaatctatgccaccgaggcgcat
gtgttccctgttcagccgccttttgcagaagcctcagatgaatgccttcctaaagtctta
aacagcaaccccccacgcatcgtaaagtatttggccttacaggacctgatgctgctttct
caatattctccttctcggaggcaagaagttttcagtctcagccaaccaggtggacatccc
cacaattggactgctatttcgagggagtgtttgaatcttttaaatgatatgactcagaaa
ctggttctctaccaagaagctgctgctacaaatgggaggatgtattcatcatactcagtg
gaacccaagaaactgagctctgcagaagaaactgcttttcagactccaaaacctagtcag
acgccttccgtgccgccgttagttaaaacttcactgttttctccaaaattatctacaccc
aatgtttcaagtccttttgggaccccgtttggctccagcgtagtgaaccgaatggctgga
attcttgatgtaaaccccttctctgggtctccccaaagtcctcagctcataagaagagga
ccgaggctgtggactcacacttctgatcaacaagtgtctgcaatttctaacccatctcct
tgcgcctctgttactgctgagggtaagacagtgagacagcccagtgtgatctactcgtgg
attcagaataaacgagaacagattaagaatttcttgtcaaaacgggtgctgataatgtac
tttttcagtaagcacccagaggcctccattcaggctgttttttcagatgcccaaatgcat
atttgggctttagaaggtctgtctcacttagtagcagcgtcatttacagaagatagattt
ggagttgtccagaccacactcccagctatccttcatacgctgttgactctgcaggaggct
gtcgacaagtacttcaagctgcctcatgcttctagtaaaccaccccgagcttcaggaagc
cttgtggacacgtcctacaaaacattgagatttgctttcagggcctccctgaaaaccgct
atctaccgtataaccaccacgtttggtgaacatctgaacgctgtgcaggcatctgcagaa
catcagaaaagacttcagcaattcttggagttcaaagaatag

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