Mus musculus (house mouse): 75599
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Entry
75599 CDS
T01002
Symbol
Pcdh1, 2010005A06Rik
Name
(RefSeq) protocadherin 1
KO
K16498
protocadherin delta 1
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
75599 (Pcdh1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mmu01009
]
75599 (Pcdh1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
mmu04515
]
75599 (Pcdh1)
Protein phosphatases and associated proteins [BR:
mmu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
75599 (Pcdh1)
Cell adhesion molecules [BR:
mmu04515
]
Cadherins
Protocadherins
75599 (Pcdh1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
75599
NCBI-ProteinID:
NP_001390724
MGI:
104692
Ensembl:
ENSMUSG00000051375
LinkDB
All DBs
Position
18:complement(38318967..38345023)
Genome browser
AA seq
1216 aa
AA seq
DB search
MGPLRPSPGPGGQRLLLPPLLLALLLLLAPSASHTTQVVYKVPEEQPPNTLIGSLAADYG
LPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGLRECQNQIPGNPCILEFEVSITD
LVQNGSPRLLEGQIEVQDINDNTPNFASPVITLAIPENTNIGSLFPIPLATDRDAGPNGV
ASYELQAGPEAQELFGLQVAEDQEEKQPQLIVMGNLDRERWDSYDLTIKVQDGGNPPRAS
SALLRVTVLDTNDNAPKFERPTYEAELSENSPIGHSVIQVKANDSDQGANAEIDYTFHQA
PEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAKDRGATPKSARAQVVVTVKDMND
NAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVSDRDEGENAAVTCVVAGDVPFQL
RQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVDSGNPPLSSTNSLKVQVVDVNDN
APVFTQSITEVAFPENNKPGEVVAEVTASDADSGSNAELVYSLEPEPAAQGLFTISPENG
EIRVKTSLDREQRDSYELKVVAADRGSPSLQGTATVLVNVLDCNDNDPKFMLSGYNFSVM
ENMPALSPVGMVTVIDGDKGENARVQLSVEQDNGDFVIQNGTGTILSSLSFDREQQSTYT
FQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAPSNTSHRLLTPQTRLGETVSQVTAE
DIDSGINAELTYSIAGGNPYGLFQIGSHSGAITLEKEIERRHHGLHRLVVKVSDRGKPPR
YGTALVHLYVNETLANRTLLETLLVHSLDTPLDIDIAGDPEYERSKQRGNILFGVVAGVV
AVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPKPSGKAAKGSKSKGKKSKSPKPV
KPVEDEDDTGLQKSLKFNLMSDAPGDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQP
QSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDYSYRTNPPKYPSKQLPHRRVTFS
ATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLGPLALPEDHYERTTPDGSIGEME
HPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSSPSRRTKSSALKLSTFVPYQDRG
GQEPAGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHDSCKDSATLEEIPLTQTSDFPPT
ATPASAQTAAKREIYL
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atggggcctctgaggcccagcccagggcctggggggcagcggttgctgctgcccccctta
ctgctggcactgctgctcctattggctccatctgccagccataccacccaggtagtatac
aaggtgccagaggaacagccgcccaacacccttattgggagccttgctgccgactacggt
ttaccagacgtgggtcatctgtataaactagaggtaggtgctccgtatcttcgagtggat
ggcaagactggagacattttcaccacagagacctccattgatcgagaggggctccgtgaa
tgccagaaccagatccctgggaatccctgtatcctggagtttgaggtgtcaatcacggac
ctcgtgcagaacggcagcccccggctgctagagggccagatagaggtgcaagacatcaat
gacaacacgccgaactttgcctcgccagtcattaccctggccatccctgagaacaccaac
atcggctcgctcttccccatcccactggccacagaccgtgacgccggccccaatggcgta
gcatcctatgagctgcaggctgggcctgaggcccaggagctatttggactacaggtagcc
gaggaccaggaggagaagcagccacagctcattgtcatgggcaacctggaccgtgaacgc
tgggactcctacgacctcaccatcaaggtacaggatggaggcaatcctccacgtgccagc
agcgccctgcttcgtgtcactgtgcttgatacaaacgacaacgcccccaaattcgagcgg
cctacctacgaagccgagctgtctgagaacagtcccattggccactcggtcatccaggtg
aaagctaacgactcagaccaaggtgccaatgcggagattgactacacgttccaccaggca
cctgaggttgtcaggcgccttttgcgactagaccgaaacactggacttatcaccgtccag
ggccccgtggaccgagaggatttaagcactctgcgtttctcagtgctcgccaaggaccga
ggcgccacccccaagagtgcccgtgcccaggtagttgtgactgtgaaagacatgaacgac
aatgccccgaccatcgagatccgaggcatagggctggtgactcatcaagacggaatggct
aacatatcagaggacgtggctgaggagaccgccgtggccttggtgcaggtgtctgatcga
gacgagggagagaacgcagccgtcacctgtgtcgtagcaggcgatgtgcccttccagcta
cgccaggccagcgagacaggcagcgacagcaagaaaaagtatttcctgcagaccaccacc
cctctcgactatgagaaagtcaaagactataccatcgagatcgtggctgtggattccggc
aaccctccactctctagcaccaactccctcaaggtgcaggtggtagacgtcaatgacaac
gcccccgtcttcacccagagcatcactgaagttgccttcccagaaaacaacaagcctggt
gaagtggtggccgaggtcacggccagtgatgctgactctggctctaacgcagagctagta
tactcgctggaacctgagccagctgcccaagggctcttcactatctcacccgagaatgga
gagatccgggtgaagacatcactggatcgggaacagagagacagctatgagctgaaggtg
gttgcggccgacaggggcagtcccagccttcagggcacagccacagtcctcgtcaatgtg
ctcgactgtaatgacaatgaccccaaatttatgctgagtggctacaacttctcagtgatg
gagaatatgccagcgctgagtccagtgggtatggtgactgtcattgacggagacaaaggg
gagaatgcccgggtgcagctctcggtagagcaggacaatggtgactttgttatccagaat
ggcacaggcaccatcttatccagtttgagcttcgatcgggagcaacagagtacctacacc
ttccaactgaaggccgtagatggcggagtcccacctcgttcggcttatgttggtgtcacc
atcaatgtgctggatgagaatgacaatgcaccctttatcaccgccccctccaacacatct
caccgactgctgaccccgcagacacgtcttggtgagacagtcagccaggtgacagcggag
gacattgactctggtatcaatgctgagctgacctatagcatcgctggcggcaacccttat
gggctcttccagattggatcacattcgggagccatcacgctggaaaaagaaattgaacgg
cgccaccacgggttacaccgcctcgtggtgaaggtcagtgaccgtggcaagccccctcgc
tacggcacagccttagtccacctttacgtcaacgagaccttagccaaccgcacgctgcta
gagaccctcctcgtccatagcctggacacgcccctggatattgacatcgctggggatccg
gaatacgagcgttccaagcagcgtggcaacattctctttggggttgtagccggtgtggtg
gccgtcgccttactcatagccctggcagtactagtgcgctactgccggcagcgggaggcc
aagagcggctaccaggctggtaagaaggagactaaggacctgtatgcccccaagcctagc
ggcaaagctgctaagggaagcaagagcaaagggaagaaaagcaagtcaccgaaacctgtg
aagccagtggaggatgaagatgacaccgggctgcagaagtccctcaagttcaacctaatg
agcgatgcccctggagacagtccccgaatccacctgcccctcaactacccaccaggcagc
cccgacttgggccgccattaccgctccaactccccactgccttctatccagctgcaaccc
cagtcaccctcggcctccaagaagcaccaggtggtgcaggacctgccgcctgcaaacaca
tttgtgggcactggggacaccacgtccacgggctccgagcagtactccgactacagctat
cgcaccaacccccccaaataccccagcaagcagttacctcaccgccgtgtcaccttctcg
gccaccagtcaggcccaggagctgcaggatccatcacagcacagttattatgacagtggc
ctggaggaatcggaaacaccctctagcaagtcatcctccggcccccggcttggtcccctg
gctcttcctgaggaccactatgagcgtaccacccctgacggcagcataggtgaaatggag
caccccgagaatgacctccgccctttgcccgacgtcgccatgacgggcacatgtacccgg
gagtgcagcgagtttggtcactctgacacatgctggatgcctggccagtcgtctcccagc
cgccggaccaagagcagcgccctcaaactctccaccttcgtgccttaccaggaccgagga
gggcaggagcctgcgggcgccggaagccccagccccccggaagaccggaacaccaaaacg
gcccccgtgcgcctcctgccctcctacagtgccttctcccacagtagccatgactcctgc
aaggactcggccaccttggaggaaattcccttgacccagacctcggacttcccacccaca
gccacaccggcatctgcccagaccgccgccaagcgtgagatctacctgtga
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