Mus musculus (house mouse): 93728
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Entry
93728 CDS
T01002
Symbol
Pabpc5, C820015E17
Name
(RefSeq) poly(A) binding protein, cytoplasmic 5
KO
K13126
polyadenylate-binding protein
Organism
mmu
Mus musculus (house mouse)
Pathway
mmu03015
mRNA surveillance pathway
mmu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
93728 (Pabpc5)
09123 Folding, sorting and degradation
03018 RNA degradation
93728 (Pabpc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmu03019
]
93728 (Pabpc5)
03041 Spliceosome [BR:
mmu03041
]
93728 (Pabpc5)
Messenger RNA biogenesis [BR:
mmu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
93728 (Pabpc5)
mRNA cycle factors
Stress granule specific factors
93728 (Pabpc5)
Spliceosome [BR:
mmu03041
]
Complex C
Other components
Complex C specific factors
93728 (Pabpc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_5
RRM_10
DUF4523
RRM_3
TC1
Motif
Other DBs
NCBI-GeneID:
93728
NCBI-ProteinID:
NP_444344
MGI:
2136401
Ensembl:
ENSMUSG00000034732
UniProt:
Q8C7D3
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All DBs
Position
X:118836893..118839862
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AA seq
381 aa
AA seq
DB search
MSGEPNTAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGY
GYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTIDNRA
LFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFK
FPEERAAEVRTRERATFTNVFVKNFGDDIDDEKLNKLFSEYGPTESVKVIRDATGKSKGF
GFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKEKNRPSG
VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEACKAVDEM
NGRIIGSKTLHVTLGQARHRW
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgagtggggagcctaatactgctggcaagaaaaagaagtacctcaaggctgccctgtat
gtaggtgacttggaccctgacgtcacagaggacatgctctataagaagttcagacctgct
ggccctctgcgcttcactagaatctgtcgtgacccagtgacccgcagccccctgggttat
ggttatgttaatttccgctttcctgcagatgctgaatgggcattgaacacaatgaatttt
gatttaattaatggtaaaccatttcgcctcatgtggtcacagccagatgaccgtttaaga
aagtctggagttggaaatatattcatcaaaaacttggataagaccatagacaatagggcc
ttattttatttattttcggcttttgggaacattctttcctgtaaagtcgtatgtgatgac
aatggctctaagggttatgcttatgtccacttcgatagccttgctgctgccaatagggct
atctggcacatgaatggagtgcggctcaataaccgccaggtatatgttggtcgattcaaa
tttcctgaagagagagcagcagaagtcagaaccagagaaagagcaacatttaccaatgtt
ttcgtaaaaaactttggagatgacattgatgatgaaaaactaaacaaacttttcagtgaa
tatgggccaactgagagtgttaaagtcataagagatgccactgggaaatctaaaggcttt
ggatttgtaagatatgaaacacatgaagctgcccaaaaggctgtgctagaactgcatggc
aagtcaatagatgggaaagtcctatgtgtagggagagcacagaagaaaattgaacgcctg
gctgaattaaggcggagatttgaacggctgaaattaaaagaaaaaaataggccttcagga
gtgcctatctatattaagaacttggatgagaccatcaatgatgagaaactaaaggaggaa
ttttcttcatttggatcaatcagtcgagccaaagtgatgatggaagtgggacaaggaaaa
gggtttggtgttgtctgcttttcttcttttgaagaggcgtgcaaagcagtggatgaaatg
aatggtcgcataataggctccaagacattgcatgtcactctggggcaagctaggcacagg
tggtga
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