Mycolicibacterium mucogenicum: C1S78_004740
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Entry
C1S78_004740 CDS
T07324
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mmuc
Mycolicibacterium mucogenicum
Pathway
mmuc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmuc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1S78_004740 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmuc03400
]
C1S78_004740 (mfd)
Enzymes [BR:
mmuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1S78_004740 (mfd)
DNA repair and recombination proteins [BR:
mmuc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C1S78_004740 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
LSDAT_prok
MFD_D3
DUF7692
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QPG70320
UniProt:
A0A8H2J9G8
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All DBs
Position
967010..970660
Genome browser
AA seq
1216 aa
AA seq
DB search
MTSPGQQSIQTPLAGLVQLALTDPGLQELTRQAAEGVAEQALVGPVSARLPVAAALAAAG
PVLVVTATGREADDLAAELRAVHGDAVALFPSWETLPHERLSPGVDTVGARLTVLRRLAR
PDDARLGPPLRVVVTTARSLLQPLAGGVTDAEPVTLTIGGEADFDDTVARLVELAYTRVD
MVGKRGEFAVRGGILDVFTPTAEHPVRVEFWGDEVTEMRMFSVADQRSIPEIAVDTVIAM
PCRELLLTADVRDRAAEIGADLPSSDNQVTGSIADMMAKLAEGIPVDGMEALLPVLRPGE
LALLTDRLPAGAPLLICDPEKVRTRAADLIKTGREFLEASWSVAAVGGDAPIDIEQLGGS
GFRDFAEIREAAAAGGHPWWTLSQLANESAQELDIRPAPSARSQQSLEEIFAMLRAHIAT
GGLAAVVTPGTGTAHRVVEQLGESDVAATMLEPGEVPKPGVVGVLKGPLHDGLVLSGVNL
VIITETDLTGNRAGATEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVGG
ARREYLVLEYASAKRGGGSDRLYVPMDSLDQLSRYVGGTEPTLSRLGGSDWTNTKTKARK
AVREIAGELVSLYAKRQSAPGHAFAPDTPWQAEMEDAFGFTETMDQLTAITEVKADMEKP
VPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTARMAGFPVT
VKGLSRFTDPAESRLVIEGLKDGSVDVVIGTHRLLATGVTWKDLGLVIVDEEQRFGVEHK
EHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERFPVLTYVGPHDDKQVA
AALRRELLRDGQAFYIHNRVKSIDSAAARVRQLVPEARVVVAHGQMPEELLEKTVEGFWN
RDYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPE
VPLTETAHDRLATIAQNNDLGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLV
GEAVEAYRAAVDGKTIAAVEEPKEVRVDLPIDAHLPPDYIGSDRLRLEAYRRLAAASDHA
AVASVVEELVDRYGPLPEPAQRLVAVARLRLLCREYGVTEVSAISDSTIRLTPLTLMDSG
QLRLKRMYPGATYRATTSTVQIPIPRAGAGVGAPRIRDLELARAVAGLLLVLDGKAAGEV
DITDLGGSAVGEADRA
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgacctccccggggcagcaatcgatccaaaccccgttggcggggctcgtccaactcgca
ctcaccgatcctggcctgcaggaattgacgcggcaggccgccgagggtgtcgctgagcag
gctctggtgggcccggtcagcgcgcggctcccggtcgcggccgcgctggccgccgccggc
ccggtgctcgtcgtcacggccaccggtcgcgaggccgacgacctcgccgccgaactgcgg
gccgtccacggcgacgccgtggcgctgttcccgtcgtgggagacgctgccgcacgagcgg
ctctcgcccggcgtggacaccgtgggtgcccggctgacggtgctgcgccggctggcgcgg
cccgacgacgcccgcctcggcccgccgctgcgcgtggtggtcacgacggcccggtcactg
ctgcagccgctggccggcggcgtgaccgacgccgaacccgtgacgctgaccatcggcggt
gaagcggacttcgacgacaccgtggcgcggctggtcgaactggcctacacgcgcgtcgac
atggtgggcaagcgcggcgaattcgccgtccgcggaggcattctcgacgtcttcacgccg
accgccgagcaccccgtgcgtgtcgagttctggggcgacgaggtcaccgagatgcggatg
ttctcggtggccgaccagcggtccatccccgagatcgccgtcgacaccgtgatcgcgatg
ccctgccgtgaactgctgctgaccgcggacgtccgcgaccgcgccgccgagatcggcgcg
gatctgcccagtagcgacaaccaggtcaccggcagcatcgcggacatgatggccaagctc
gccgaaggcattccggtcgacggcatggaggcgctgctgccggtgttgcgccccggcgag
ctggcgctgctcaccgatcggcttccggccggtgcgccgctgctgatctgcgatccggag
aaggtgcgcacccgcgccgccgatctgatcaagaccggccgcgagttcctggaggcctcg
tggtcggtggccgccgtgggcggtgacgcaccgatcgacattgagcaacttggtggttcg
ggtttccgggacttcgcggagatccgggaggcggcggccgccggtggccacccgtggtgg
acgctgagccagttggccaacgagtcggcgcaggagctcgacatccggccggcgccgtcg
gcgcgcagtcagcagagcctcgaagagatcttcgcgatgctgcgggcacacatcgccacc
ggcgggctcgccgcggtggtgaccccgggcaccggtaccgcgcaccgcgtcgtcgagcag
ctcggtgaatccgatgtcgccgcaacgatgttggagcccggcgaggtgccgaagcccggt
gtcgtcggcgtgctcaagggcccgctgcacgacggtctggtgctgtccggcgtcaacctc
gtgatcatcaccgagaccgacctgacgggtaaccgggccggggccaccgagggcaaaagg
cttgccgccaaacggcgtaacgtcgtcgatccgctggcgttgacggccggcgacctggtg
gtgcacgaccagcacggcatcggcaagttcgtcgagatgaccgagcgcgtggtcggtggc
gcgcggcgtgagtatctggtcctggagtacgcatcggccaaacgtggcggcgggtccgac
cggctgtacgtgccgatggattcgctggaccagctgtcccgatacgtcggcggcaccgag
cccacgctgagccggctcggcggcagcgactggaccaacacgaagaccaaggcgcgcaag
gccgttcgtgagatcgctggtgagctggtctcgctgtatgccaagcggcagtccgcgccg
gggcatgccttcgccccggacaccccgtggcaggccgagatggaagacgcgttcggcttc
accgagaccatggaccagttgaccgccatcaccgaggtcaaggccgacatggagaaaccg
gttccgatggaccgggtcatctgcggtgacgtcggctacggcaagaccgagatcgcggtg
cgcgcggcgttcaaggccgtgcaggacggcaagcaggtcgcggtcctggtgccgacgacg
ctgctggcagaccagcacctgcagaccttcaccgcgcgcatggccggcttcccggtgacg
gtcaagggcctgtcccgcttcaccgatccggctgaatcccgtttggtgatcgagggtttg
aaggacggctcggtcgacgtggtgatcggcacgcaccggttgctggcgacgggcgtcacg
tggaaagacctgggtctggtgatcgtcgacgaggagcagcggttcggcgtcgagcacaag
gagcacatcaagtcgatgcgcacccacgtcgacgtgttgaccatgagcgcgaccccgatc
ccgcgcaccctggagatgagcctggccggcatccgggagatgtcgacgattctgacgccg
cccgaggaacgcttcccggtgctgacttacgttgggccgcatgacgataagcaggtcgcc
gcggccctgcggcgcgagctgttgcgtgatgggcaggcgttctacatccacaaccgggtg
aagtcgatcgacagcgccgccgcccgggtgcgccagctggtgccggaggcgcgcgtcgtg
gtggcacacgggcagatgcccgaggagttgctggagaagaccgtcgagggcttctggaac
cgcgactacgacatcctggtctgcaccacgatcgtcgagacgggccttgatatctcgaac
gccaacacgctgatcgtggagcgcgccgacaccttcggtctgtcgcagctgcaccagctg
cgtggccgggtgggccgcagccgcgagcgcggctacgcgtatttcctgtacccgcctgag
gttccgctcaccgagaccgcgcacgaccggctggccaccatcgcgcagaacaacgatctg
ggcgccggcatggccgtggcgatgaaggacctcgagattcgcggggcgggcaacgtcctg
ggtgtcgagcagtccggacacgtcgcgggcgtcggcttcgacttgtatgtccggctggtc
ggcgaggccgtggaggcctaccgcgccgcggtcgatgggaaaaccattgcggcggtggag
gagccgaaggaggtgcgggtcgacctgccgatcgatgcgcacctgccgcccgactacatc
ggcagcgaccggctgcggctcgaggcctaccgccggttggccgcggcgtccgaccacgcg
gcggtggcgtccgtcgtcgaggagttggtggaccgctacggaccgctgcccgaacctgcg
cagcgcctggtcgcggtggcccgcctgcggctgctgtgccgcgagtacggcgtcaccgag
gtcagcgcgatctcggactcgaccatccggctgacgcccctgacgctcatggactccggg
cagctgcggctcaagcggatgtatcccggcgcgacgtaccgggccaccacgtcgacggtg
cagatcccgatcccgcgggccggcgccggggtcggcgcaccccgcatccgtgacctggag
ttggcccgcgcggtagccggtctgctgctggtgctcgacgggaaagcggcaggtgaagtt
gatataaccgacctgggaggtagtgcggtgggagaggcggatcgcgcatga
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