Mycolicibacterium mucogenicum: C1S78_006330
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Entry
C1S78_006330 CDS
T07324
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mmuc
Mycolicibacterium mucogenicum
Pathway
mmuc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmuc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1S78_006330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmuc03019
]
C1S78_006330
03009 Ribosome biogenesis [BR:
mmuc03009
]
C1S78_006330
Enzymes [BR:
mmuc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C1S78_006330
Messenger RNA biogenesis [BR:
mmuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C1S78_006330
Ribosome biogenesis [BR:
mmuc03009
]
Prokaryotic type
rRNA helicases
C1S78_006330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Flavi_DEAD
DUF7818
Motif
Other DBs
NCBI-ProteinID:
QPG70586
UniProt:
A0A8H2J9X5
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All DBs
Position
1270390..1272291
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AA seq
633 aa
AA seq
DB search
MTTSSPEADPDSGGPNTTADPASETSADTGAEVTFADLNIRPEVLRALTDVGYESPSPIQ
AATIPAILNGSDVVGLAQTGTGKTAAFAVPVLSKIDPTSRNTQCLVLAPTRELALQVAEA
FGKYGVHLNVNVLAIYGGSSYTPQLAGLKRGAQVVVGTPGRVIDHLSKGSLNLSHLDYLV
LDEADEMLQMGFAEDVERILADTPEYKQVALFSATMPPAIKKITSKYLHDPVEVTIKAKA
QTAENITQRYIQVAGARKMDAITRLLEVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAA
INGDIPQAVRERTINGLKDGSIDILIATDVAARGLDVERISHVLNYDIPHDPESYVHRIG
RTGRAGRSGTALLFVTPRERHLLNSIERVTRKKLIESQLPSVDDVNAQRVAKFRDSITDS
LNAPSVELFRRLIEDYERDNNVPLAEIAAALAVQTQGGEEFLMKEPPPEKRRERPDRDDR
GDRGDRERKPRSTRDDLATYRIAVGKRHKVIPGAIVGAIANEGGLNRSDFGHISIRVDHS
LVELPAKLSKDTLKKLENTRISGQLIHLELDKGGHSGGYQDRGGRPDRGSDRGSYSDRGG
RQDRGPYKGRGGRDDDRRGGHSEGRGEGKRKYK
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgtcttcgcccgaggccgacccggattcgggcggccccaacaccaccgctgat
cccgcttcagaaacctccgccgacaccggcgccgaggtcacgttcgccgacctgaacatc
cggccggaggtgctgcgggcactgaccgatgtcggatacgaatctccgtcgcccatccag
gccgcgacgatccccgcgatcctgaacgggtccgacgtcgtcggcctcgcccagaccggt
accggcaagacggccgccttcgcggttccggtgctgtccaagatcgaccccaccagccgc
aacacccagtgtctggtgctggcgccgacccgggagctggcgctgcaggtggccgaggcg
ttcggcaagtacggcgtgcacctgaacgtcaacgtgctggcgatctacggcgggtcgtcg
tacacaccgcagctggccggcctcaagcgcggcgcccaggtcgtggtgggcaccccgggc
cgcgttatcgatcacttgtcgaagggcagcctgaacctctcgcacctggactacctggtg
ctcgacgaggccgacgagatgctgcagatgggtttcgccgaggatgtcgagcgcattctg
gccgacaccccggagtacaagcaggtcgcgttgttctcggcgaccatgccgccggccatc
aagaagatcacctcgaagtacctgcacgacccggtcgaggtgaccatcaaggccaaggcc
cagaccgccgagaacatcacgcagcgctacatccaggtggccggcgcccgcaagatggac
gccatcacccggctgctcgaggtcgagccgttcgaagccatgatcgtcttcgtccgcacc
aagcaggccaccgaggaagttgccgaaaagctcagggcccgtggcttttccgcggcggcg
atcaacggtgatattccgcaggcggtccgcgagcgcaccatcaacgggctcaaggacggt
tcgatcgacatcctgatcgccaccgatgtggcggcgcgcggcctggacgtcgaacgtatc
tcgcacgtgctgaactacgacattccgcacgaccccgagtcgtacgtgcaccgcatcggc
cgcaccggccgggccgggcggtcgggtaccgcgctgctgttcgtcactccgcgggaacgg
cacttgctcaactcgatcgagcgcgtcacgcgcaagaaactcatcgagtcccaacttccc
tcggtcgacgacgtcaacgcccagcgcgtggccaagttccgcgactcgatcaccgactcg
ctgaacgcaccgagcgtcgagctgttccgccgcctgatcgaggactacgagcgcgacaac
aacgtgccgttggccgagatcgcggcggcgctggcggtgcagacgcagggtggtgaagag
ttcctcatgaaggagccgccgccggagaagcggcgcgagcgtccggatcgggacgaccgc
ggggaccgtggcgatcgcgagcgtaagccccgctcgacgcgtgacgacctggccacctac
cgcatcgcggtgggcaagcggcacaaggtgattccgggtgccatcgtcggcgccattgcc
aacgagggcggtctgaaccgcagcgacttcgggcacatcagcatccgggtggaccactcg
ctggtggagctgcccgccaagctgagcaaggacacgctcaaaaagctggagaacacccgc
atttcgggccagctgattcacctggaactcgacaagggcgggcattcgggtggttaccag
gaccgcggcggacgtcccgaccgcggctcggaccggggttcgtactccgaccgcggcggc
cgtcaggatcgtgggccgtacaaaggccgtggcggccgcgacgacgaccgacgcggcggc
cacagcgaaggtcgaggcgagggcaagcgcaagtacaagtga
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