Mycolicibacterium mucogenicum: C1S78_008100
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Entry
C1S78_008100 CDS
T07324
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mmuc
Mycolicibacterium mucogenicum
Pathway
mmuc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmuc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C1S78_008100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmuc03019
]
C1S78_008100
03009 Ribosome biogenesis [BR:
mmuc03009
]
C1S78_008100
Enzymes [BR:
mmuc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C1S78_008100
Messenger RNA biogenesis [BR:
mmuc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C1S78_008100
Ribosome biogenesis [BR:
mmuc03009
]
Prokaryotic type
rRNA processing factors
C1S78_008100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
PCB_OB
Motif
Other DBs
NCBI-ProteinID:
QPG70897
UniProt:
A0A8H2PFB0
LinkDB
All DBs
Position
1652836..1655859
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AA seq
1007 aa
AA seq
DB search
MADDAQLEDRSEDAGSAAEPIELPERLRIFSLARILGTTSKKITETLAEVDGRPRNPAST
VTRAEAERVRDLLGLGGEATQDPAPAAPAEAAEPAAEVLVEVVSETSEVTAEVAVEAVDV
AEAAVEIAREAADAGAAEPDEDEPESRLLLETVPAPAAEPADYLPLFVAPQPVTFRPPAE
PDDFADDDTADEAADAADEGGEDGTDEDGERPANRRRRRGRRGRGRGRGEQSSDDATDGD
AEGETQDASAEGDEDTDGEADEDAGDDDANASDGASRRRRRRRRRKSGGAGGDDADGEAG
SPDDPPNTVVHERAPRAKSDNNEIQGITGSTRLEAKRQRRRDGRDAGRRRPPILSEAEFL
ARREAVERVMVVRDKIRTEPPHEGARYTQIAVLEDGVVVEHFVTSAASASLVGNIYLGIV
QNVLPSMEAAFVDIGRGRNGVLYAGEVNWEAAGLGGNNRKIEQALKPGDYVVVQVSKDPV
GHKGARLTTQISLAGRYLVYVPGASSTGISRKLPDTERQRLKEILKEVVPADAGVIIRTA
SEGVKEEDIRSDVNRLQERWNQIDTEATTIKAKAAGAAVALYEEPDVLVKVIRDLFNEDF
SKLVVSGDEAWNTINGYVSSVAPELLSRMSQYEPAGGPTGPDVFSVYRIDEQLAKAMDRK
VWLPSGGTLVIDRTEAMTVVDVNTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGG
IIVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLIEAFS
TTCSHCAGRGIVLHGDPVDTASANGRKAEAAGGAGGGGGRRSKRAKKAAPRAEETPVAKV
PPHPQGEHPMFKAMAAANGKHEDELDDEDVTEDTEGLADEAADSDAVESTEVLTELDTDE
DVEDDEEADESEDDEDAEDDELEVELDEDFEDSDEDDDELDLDDDTDEDDDDSDDDSDED
DEDEDDDDDEDEDDQPAEPAVARAPVVRQRRRAAARPAGPPVGGVDG
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
gtggccgacgatgcccaacttgaagaccgatccgaagacgccggcagtgcagcggagccg
atagagctcccggagcgcctgcggattttctcgctcgcccggatcctcgggacgaccagc
aagaagatcaccgagacgctcgccgaggtcgacggcaggccccgcaacccggcttccacg
gtgacccgtgccgaggccgagcgcgtccgtgacctcctgggactcggtggcgaagcgacg
caggacccggcacccgccgcaccggcggaggccgccgagccggcagccgaagtgctggtc
gaggtcgtcagcgaaacctctgaagtgaccgccgaggtcgccgtcgaagccgtcgacgtc
gccgaagccgctgtcgagatcgcccgcgaggcggccgatgccggcgccgcggagcccgac
gaagacgagcccgagtcgcgcctgctgctcgagacggtcccggcgcccgccgctgagccc
gccgactacctgccgctgttcgtggcgccgcagcccgtgacgttccggccgccggccgag
cccgacgacttcgctgacgacgacaccgccgacgaggcggccgacgccgccgacgagggt
ggcgaggacggcaccgacgaagacggtgagcggcccgccaaccggcgccgtcgtcgtggt
cgccggggacgtggccgcggccggggtgaacagagcagcgacgacgcgaccgacggtgac
gccgaaggtgagacgcaggacgcgtcggccgagggcgacgaggacaccgacggcgaggcc
gacgaggacgccggtgacgacgacgcgaacgcgtcggacggtgccagccgtcgtcgccgt
cgtcgccgccgccgcaagtcgggcggtgccggtggtgacgatgccgatggcgaggccggt
tcgccggacgacccgcccaacaccgtcgtccacgagcgcgccccgcgcgccaagtcggac
aacaacgaaatccagggcatcaccgggtccacccggttggaggccaagcggcagcgccgt
cgcgacggccgtgacgcgggccgccgccgtccgccgatcctgagcgaggccgagttcctg
gcccgccgcgaagccgtcgagcgcgtgatggtggtgcgcgacaagatccgcaccgagccg
ccgcacgaaggtgcccggtacacccagatcgccgtgctggaagacggcgtcgtcgtcgag
cacttcgtcacgtccgcggcgtcggccagcctggtcggcaacatctacctcggcatcgtg
cagaacgtgctgccctcgatggaggcggcattcgtcgacatcggccgcggccgcaacggt
gtgctctacgccggtgaggtcaactgggaggccgccggcctcggcggcaacaaccgcaag
atcgagcaggcgctcaagcccggcgactacgtcgtcgtccaggtcagcaaggacccggtc
gggcacaagggcgcccgcctcaccacgcagatttcgctggccggtcgctacctggtgtac
gtgccgggggcctcgtcgaccgggatcagccgcaagctgcccgacaccgagcggcagcgc
ctgaaggaaatcctcaaggaggtcgtgcctgccgacgccggtgtgatcatccgcaccgcg
tccgagggcgtgaaggaagaggacatccgctcggacgtcaatcggctgcaggaacgctgg
aaccagatcgacaccgaggccacaactatcaaggccaaggccgccggcgccgcagtggcg
ctgtacgaagagcccgacgtcctggtcaaggtcatccgcgacctgttcaacgaggatttc
tccaagctcgtggtgtcaggtgacgaggcctggaacaccatcaacggctacgtgagttcc
gttgcgcccgaactgctttcgcgtatgtcgcagtacgagcccgccggtgggcccacgggt
ccggacgtgttctcggtgtaccgcatcgacgagcagctggcgaaggcgatggatcgcaag
gtgtggctgccctcgggcggcaccctggtgatcgaccgcaccgaggccatgaccgtcgtc
gacgtcaacaccggcaagttcaccggctcgggcggcaacctggagcagacggtcacccgc
aacaacctcgaagcggccgaggagatcgtccgtcagctgcggctgcgggacatcggcggc
atcatcgtcatcgacttcatcgacatggtgctcgaatccaaccgtgacctggtgctgcgc
cgcctcaccgaggcgctggcccgggaccggacccgccaccaggtgtccgaggtcacctca
ctcggactggtgcagctgacccgcaagcgtctcggcaccggcctgatcgaggcgttctcc
acgacttgttcgcactgcgcgggccgcggcatcgtgctgcacggcgatccggtggacacc
gcatcggcgaacggccgcaaggccgaggccgccggcggtgccggtggtggcggtggccgg
cgcagcaagcgcgccaagaaggccgcgccgcgcgccgaggagactccggtggccaaggtg
ccgccgcacccgcagggcgagcacccgatgttcaaggccatggcggccgcgaacggcaag
cacgaggacgaactcgacgacgaagacgtcaccgaggacaccgagggcctggccgacgaa
gcggccgacagcgatgccgtcgagtccaccgaggtgctgaccgagctggacaccgacgaa
gacgtcgaagacgacgaggaagccgacgagtccgaagacgacgaggacgccgaggacgac
gaactcgaagtcgagctcgacgaggacttcgaggacagcgacgaagacgacgacgagctg
gacctcgacgacgacaccgacgaagacgacgacgactcggacgacgactcggatgaggac
gacgaagacgaggacgacgacgacgacgaggacgaggacgatcagcccgctgaaccggcc
gtcgcccgggctcccgtcgtccggcagcggcgccgcgccgcggcccgtcccgccggtccg
ccggtcggaggtgtcgatggctga
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